Sohrab P. Shah

22 papers B 1Journal 17Unranked 4
YearRankTypeTitle / Venue / Authors
2024 J jnl
Population Priors for Matrix Factorization.
Trans. Mach. Learn. Res.
Sohrab Salehi, Achille Nazaret, Sohrab P. Shah, David M. Blei
2020 J jnl
Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data.
PLoS Comput. Biol.
Camila P. E. de Souza, Mirela Andronescu, Tehmina Masud, Farhia Kabeer, Justina Biele, Emma Laks, Daniel Lai, Patricia Ye, Jazmine Brimhall, Beixi Wang, Edmund Su, Tony Hui, Qi Cao, Marcus Wong, Michelle Moksa, Richard A. Moore, Martin Hirst, Samuel Aparicio, Sohrab P. Shah
2019 J jnl
12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr.
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
2019 J jnl
Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.
PLoS Comput. Biol.
Tyler Funnell, Allen W. Zhang, Diljot Grewal, Steven McKinney, Ali Bashashati, Yi Kan Wang, Sohrab P. Shah
2016 J jnl
densityCut: an efficient and versatile topological approach for automatic clustering of biological data.
Bioinform.
Jiarui Ding, Sohrab P. Shah, Anne Condon
2015 J jnl
Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples.
CoRR
Andrew W. McPherson, Andrew Roth, Gavin Ha, Sohrab P. Shah, Cédric Chauve, Süleyman Cenk Sahinalp
2013 J jnl
A robust hidden semi-Markov model with application to aCGH data processing.
Int. J. Data Min. Bioinform.
Jiarui Ding, Sohrab P. Shah
2012 B conf
Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing.
RECOMB
Andrew W. McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp
2012 J jnl
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.
Bioinform.
Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah
2012 J jnl
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.
Bioinform.
Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah
2011 J jnl
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.
Bioinform.
Andrew W. McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp
2011 J jnl
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.
PLoS Comput. Biol.
Andrew W. McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah
2010 J jnl
Genomic analysis of a rare human tumor.
BMC Bioinform.
Steven J. M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S. N. Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, Inanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra
2010 — conf
Robust hidden semi-Markov modeling of array CGH data.
BIBM
Jiarui Ding, Sohrab P. Shah
2010 J jnl
SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors.
Bioinform.
Rodrigo Goya, Mark G. F. Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David G. Huntsman, Kevin P. Murphy, Sam Aparicio, Sohrab P. Shah
2009 J jnl
Model-based clustering of array CGH data.
Bioinform.
Sohrab P. Shah, K-John Cheung Jr., Nathalie A. Johnson, Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy
2007 — conf
Modeling recurrent DNA copy number alterations in array CGH data.
ISMB/ECCB (Supplement of Bioinformatics)
Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy
2006 — conf
A Novel Algorithm For the Analysis Of Array Cgh Data.
ICASSP (2)
Mehrnoush Khojasteh, Bradley P. Coe, Sohrab P. Shah, Rabab K. Ward, Wan L. Lam, Calum MacAulay
2006 — conf
Integrating copy number polymorphisms into array CGH analysis using a robust HMM.
ISMB (Supplement of Bioinformatics)
Sohrab P. Shah, Xiang Xuan, Ronald J. deLeeuw, Mehrnoush Khojasteh, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy
2005 J jnl
Atlas - a data warehouse for integrative bioinformatics.
BMC Bioinform.
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette
2004 J jnl
Pegasys: software for executing and integrating analyses of biological sequences.
BMC Bioinform.
Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald T. Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette
2003 J jnl
GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results.
Bioinform.
Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette