Sisi Yuan

24 papers Misc 1Journal 20Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
A systematic review of molecular representation learning foundation models.
Briefings Bioinform.
Bosheng Song, Jiayi Zhang, Ying Liu, Yuansheng Liu, Jing Jiang, Sisi Yuan, Xia Zhen, Yiping Liu
2026 J jnl
Empowering Chemical Structures with Biological Insights for Scalable Phenotypic Virtual Screening.
CoRR
Xiaoqing Lian, Pengsen Ma, Tengfeng Ma, Zhonghao Ren, Xibao Cai, Zhixiang Cheng, Bosheng Song, He Wang, Xiang Pan, Yangyang Chen, Sisi Yuan, Chen Lin
2026 J jnl
From Tokens to Blocks: A Block-Diffusion Perspective on Molecular Generation.
CoRR
Qianwei Yang, Dong Xu, Zhangfan Yang, Sisi Yuan, Zexuan Zhu, Jianqiang Li, Junkai Ji
2026 J jnl
Molecular graph-based invariant representation learning with environmental inference and subgraph generation for out-of-distribution generalization.
J. Cheminformatics
Hang Zhu, Sisi Yuan, Mingjing Tang, Guifei Zhou, Zhanxuan Hu, Zhaoyang Liu, Jin Li, Jianmin Wang, Chunyan Li
2026 J jnl
RIGA-Fold: A General Framework for Protein Inverse Folding via Recurrent Interaction and Geometric Awareness.
CoRR
Sisi Yuan, Jiehuang Chen, Junchuang Cai, Dong Xu, Xueliang Li, Zexuan Zhu, Junkai Ji
2026 J jnl
Rethinking Drug-Drug Interaction Modeling as Generalizable Relation Learning.
CoRR
Dong Xu, Jiantao Wu, Qihua Pan, Sisi Yuan, Zexuan Zhu, Junkai Ji
2026 J jnl
Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation.
CoRR
Dong Xu, Qihua Pan, Sisi Yuan, Jianqiang Li, Zexuan Zhu, Junkai Ji
2026 J jnl
XRepDDA: An Interpretable Drug-Disease Association Prediction Framework Leveraging Pretrained Chemical Language Models.
J. Chem. Inf. Model.
Chenyi Zhang, Yun Zuo, Qiao Ning, Sisi Yuan, Zhaohong Deng, Hongwei Yin, Anjing Zhao
2025 J jnl
Adaptive symmetry-based adversarial perturbation augmentation for molecular graph representations with dual-fusion attention information.
Inf. Fusion
Shuting Jin, Xiangrong Liu, Junlin Xu, Sisi Yuan, Hongxing Xiang, Lian Shen, Chunyan Li, Zhangming Niu, Yinhui Jiang
2025 J jnl
An image-based protein-ligand binding representation learning framework via multi-level flexible dynamics trajectory pre-training.
Bioinform.
Hongxin Xiang, Mingquan Liu, Linlin Hou, Shuting Jin, Jianmin Wang, Jun Xia, Wenjie Du, Sisi Yuan, Xiangzheng Fu, Xinyu Yang, Li Zeng, Lei Xu
2025 J jnl
DynamicDTA: Drug-Target Binding Affinity Prediction Using Dynamic Descriptors and Graph Representation.
CoRR
Dan Luo, Jinyu Zhou, Le Xu, Sisi Yuan, Xuan Lin
2025 J jnl
Enhancing Herbal Medicine-Drug Interaction Prediction Using Large Language Models.
IEEE J. Biomed. Health Informatics
Sisi Yuan, Zhecheng Zhou, Xinyuan Jin, Linlin Zhuo, Keqin Li
2025 J jnl
GRAPE: graph-regularized protein language modeling unlocks TCR-epitope binding specificity.
Briefings Bioinform.
Xiangzheng Fu, Li Peng, Haowen Chen, Mingqiang Rong, Yifan Chen, Dong-Sheng Cao, Sisi Yuan, Aiping Lu
2025 J jnl
GlySitePred: Identification of Glycation Modification Sites Based on Deep Feature Fusion and NCR-CC Sampling Technology.
J. Chem. Inf. Model.
Jiayue Liu, Yun Zuo, Youxu Tan, Wenying He, Sisi Yuan, Zhaohong Deng
2025 J jnl
MODA: A Unified 3D Diffusion Framework for Multi-Task Target-Aware Molecular Generation.
CoRR
Dong Xu, Zhangfan Yang, Sisi Yuan, Jenna Xinyi Yao, Jiangqiang Li, Junkai Ji
2025 J jnl
Semantic substructure guided multiple objective molecular generation with discrete diffusion probabilistic model.
Neurocomputing
Shugao Chen, Bosheng Song, Ruizhe Chen, Lin Liu, Guifei Zhou, Sisi Yuan
2025 J jnl
metaCDA: A Novel Framework for CircRNA-Driven Drug Discovery Utilizing Adaptive Aggregation and Meta-Knowledge Learning.
J. Chem. Inf. Model.
Li Peng, Huaping Li, Sisi Yuan, Tao Meng, Yifan Chen, Xiangzheng Fu, Dongsheng Cao
2021 — conf
A Specific Measurable Model - How Can Test Results be Influenced by Interactive Prototypes and Design Manuscripts?
HCI (28)
Xiang Gao, Nian Liu, Yong-Cheng Liu, Sisi Yuan, Zhi-Peng Hu
2021 — conf
Research on User Experience Optimization of Tutorial Design for Battle Royale Games Based on Grey AHP Theory.
HCI (28)
Jinghan Lin, Wei Zhou, Sisi Yuan
2021 — conf
The Design of Buttons in MMO Mobile Game's Battle Interface.
HCI (28)
Sisi Yuan, Jia-Sheng Hu, Zun-gui Lu, Zhang-jian Wei, Zhipeng Hu
2018 Misc conf
How to Block the Malicious Access to Android External Storage.
ICISC
Sisi Yuan, Yuewu Wang, Pingjian Wang, Lingguang Lei, Quan Zhou, Jun Li
2017 J jnl
Multi-Objective Evolutionary Algorithm Based on Decomposition for Energy-aware Scheduling in Heterogeneous Computing Systems.
J. Univers. Comput. Sci.
Sisi Yuan, Gaoshan Deng, Quanxi Feng, Pan Zheng, Tao Song
2015 J jnl
Identification of cytokine via an improved genetic algorithm.
Frontiers Comput. Sci.
Xiangxiang Zeng, Sisi Yuan, Xianxian Huang, Quan Zou
2014 J jnl
Decision Tree Classification Model for Popularity Forecast of Chinese Colleges.
J. Appl. Math.
Xiangxiang Zeng, Sisi Yuan, You Li, Quan Zou