Sing-Hoi Sze - RankMe

35 papers A* 1A 2B 4C 1Misc 1Journal 17Unranked 9

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	An Exact Matching Method for 16S rRNA Taxonomy Classification. J. Comput. Biol. Sing-Hoi Sze
2018	—	`conf`	Codon-Based Sequence Alignment for Mutation Analysis by High-Throughput Sequencing. ICCABS Sing-Hoi Sze, Craig D. Kaplan
2017	—	`conf`	Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in melilotus. ICCABS Shuhua Fu, Peter L. Chang, Maren L. Friesen, Natasha L. Teakle, Aaron M. Tarone, Sing-Hoi Sze
2016	—	`conf`	A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms. ICCABS Sing-Hoi Sze, Jonathan J. Parrott, Aaron M. Tarone
2015	J	`jnl`	Parameterized and approximation algorithms for maximum agreement forest in multifurcating trees. Theor. Comput. Sci. Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze
2014	J	`jnl`	Finding Alignments of Conserved Graphlets in Protein Interaction Networks. J. Comput. Biol. Mu-Fen Hsieh, Sing-Hoi Sze
2014	—	`conf`	Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data. ICCABS Shuhua Fu, Aaron M. Tarone, Sing-Hoi Sze
2013	—	`conf`	A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-seq data. ICCABS Sing-Hoi Sze, Aaron M. Tarone
2013	B	`conf`	Parameterized and Approximation Algorithms for the MAF Problem in Multifurcating Trees. WG Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze
2012	J	`jnl`	Identifying Complexes from Protein Interaction Networks According to Different Types of Neighborhood Density. J. Comput. Biol. Jia-Hao Fan, Jianer Chen, Sing-Hoi Sze
2012	J	`jnl`	Iterative Expansion and Color Coding: An Improved Algorithm for 3D-Matching. ACM Trans. Algorithms Jianer Chen, Yang Liu, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang
2012	J	`jnl`	Supervised Protein Family Classification and New Family Construction. J. Comput. Biol. Gangman Yi, Michael R. Thon, Sing-Hoi Sze
2011	J	`jnl`	Motif Finding in DNA Sequences Based on Skipping Nonconserved Positions in Background Markov Chains. J. Comput. Biol. Xiaoyan Zhao, Sing-Hoi Sze
2010	—	`conf`	Graphlet alignment in protein interaction networks. GENSiPS Mu-Fen Hsieh, Sing-Hoi Sze
2010	J	`jnl`	Identifying Gene Clusters within Localized Regions in Multiple Genomes. J. Comput. Biol. Qingwu Yang, Gangman Yi, Fenghui Zhang, Michael R. Thon, Sing-Hoi Sze
2009	J	`jnl`	Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models. J. Comput. Biol. Xiaoning Qian, Sing-Hoi Sze, Byung-Jun Yoon
2008	J	`jnl`	Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. J. Comput. Biol. Yue Lu, Sing-Hoi Sze
2008	J	`jnl`	Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements. BMC Bioinform. Qingwu Yang, Sing-Hoi Sze
2007	J	`jnl`	Finding Pathway Structures in Protein Interaction Networks. Algorithmica Songjian Lu, Fenghui Zhang, Jianer Chen, Sing-Hoi Sze
2007	J	`jnl`	Identifying clusters of functionally related genes in genomes. Bioinform. Gangman Yi, Sing-Hoi Sze, Michael R. Thon
2007	A*	`conf`	Improved algorithms for path, matching, and packing problems. SODA Jianer Chen, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang
2007	B	`conf`	Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. RECOMB Yue Lu, Sing-Hoi Sze
2007	J	`jnl`	Path Matching and Graph Matching in Biological Networks. J. Comput. Biol. Qingwu Yang, Sing-Hoi Sze
2006	J	`jnl`	A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. J. Comput. Biol. Sing-Hoi Sze, Yue Lu, Qingwu Yang
2006	—	`conf`	Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms. IWPEC Yang Liu, Songjian Lu, Jianer Chen, Sing-Hoi Sze
2005	B	`conf`	A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. RECOMB Sing-Hoi Sze, Yue Lu, Qingwu Yang
2005	—	`conf`	Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences. Systems Biology and Regulatory Genomics Sing-Hoi Sze, Xiaoyan Zhao
2004	C	`conf`	Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding. WABI Sing-Hoi Sze, Songjian Lu, Jianer Chen
2002	Misc	`conf`	Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner
2002	A	`conf`	Splicing graphs and EST assembly problem. ISMB Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
2000	A	`conf`	Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB Pavel A. Pevzner, Sing-Hoi Sze
1998	J	`jnl`	Algorithms and software for support of gene identification experiments. Bioinform. Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner
1997	—	`conf`	Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. German Conference on Bioinformatics Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim
1997	J	`jnl`	Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. J. Comput. Biol. Sing-Hoi Sze, Pavel A. Pevzner
1997	B	`conf`	Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. RECOMB Sing-Hoi Sze, Pavel A. Pevzner