Simone Spolaor

35 papers B 6C 7Journal 15Unranked 5
YearRankTypeTitle / Venue / Authors
2023 J jnl
Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning.
Frontiers Bioinform.
Daniele M. Papetti, Simone Spolaor, Iman Nazari, Andrea Tirelli, Tommaso Leonardi, Chiara Caprioli, Daniela Besozzi, Thalia Vlachou, Pier Giuseppe Pelicci, Paolo Cazzaniga, Marco S. Nobile
2023 J jnl
Ten quick tips for fuzzy logic modeling of biomedical systems.
PLoS Comput. Biol.
Davide Chicco, Simone Spolaor, Marco S. Nobile
2022 C conf
Local Bubble Dilation Functions: Hypersphere-bounded Landscape Deformations Simplify Global Optimization.
CIBCB
Daniele M. Papetti, Vasco Coelho, Daniel A. Ashlock, Paolo Cazzaniga, Simone Spolaor, Daniela Besozzi, Marco S. Nobile
2022 J jnl
SMGen: A Generator of Synthetic Models of Biochemical Reaction Networks.
Symmetry
Simone G. Riva, Paolo Cazzaniga, Marco S. Nobile, Simone Spolaor, Leonardo Rundo, Daniela Besozzi, Andrea Tangherloni
2022 C conf
The Impact of Variable Selection and Transformation on the Interpretability and Accuracy of Fuzzy Models.
CIBCB
Caro Fuchs, Simone Spolaor, Uzay Kaymak, Marco S. Nobile
2021 C conf
A comparison of multi-objective optimization algorithms to identify drug target combinations.
CIBCB
Simone Spolaor, Daniele M. Papetti, Paolo Cazzaniga, Daniela Besozzi, Marco S. Nobile
2021 J jnl
FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks.
PLoS Comput. Biol.
Andrea Tangherloni, Marco S. Nobile, Paolo Cazzaniga, Giulia Capitoli, Simone Spolaor, Leonardo Rundo, Giancarlo Mauri, Daniela Besozzi
2021 B conf
The Impact of Representation on the Optimization of Marker Panels for Single-cell RNA Data.
CEC
Andrea Tangherloni, Simone G. Riva, Simone Spolaor, Daniela Besozzi, Marco S. Nobile, Paolo Cazzaniga
2020 — conf
A Graph Theory Approach to Fuzzy Rule Base Simplification.
IPMU (1)
Caro Fuchs, Simone Spolaor, Marco S. Nobile, Uzay Kaymak
2020 J jnl
Computational Intelligence for Life Sciences.
Fundam. Informaticae
Daniela Besozzi, Luca Manzoni, Marco S. Nobile, Simone Spolaor, Mauro Castelli, Leonardo Vanneschi, Paolo Cazzaniga, Stefano Ruberto, Leonardo Rundo, Andrea Tangherloni
2020 J jnl
Coupling Mechanistic Approaches and Fuzzy Logic to Model and Simulate Complex Systems.
IEEE Trans. Fuzzy Syst.
Simone Spolaor, Marco S. Nobile, Giancarlo Mauri, Paolo Cazzaniga, Daniela Besozzi
2020 C conf
Fourier Surrogate Models of Dilated Fitness Landscapes in Systems Biology : or how we learned to torture optimization problems until they confess.
CIBCB
Marco S. Nobile, Paolo Cazzaniga, Simone Spolaor, Daniela Besozzi, Luca Manzoni
2020 — —
Fuzzy logic for the modeling and simulation of complex systems.
Simone Spolaor
2020 J jnl
Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells.
Bioinform.
Marco S. Nobile, Giuseppina Votta, Roberta Palorini, Simone Spolaor, Humberto De Vitto, Paolo Cazzaniga, Francesca Ricciardiello, Giancarlo Mauri, Lilia Alberghina, Ferdinando Chiaradonna, Daniela Besozzi
2020 B conf
On the automatic calibration of fully analogical spiking neuromorphic chips.
IJCNN
Daniele M. Papetti, Simone Spolaor, Daniela Besozzi, Paolo Cazzaniga, Marco Antoniotti, Marco S. Nobile
2020 J jnl
Simpful: A User-Friendly Python Library for Fuzzy Logic.
Int. J. Comput. Intell. Syst.
Simone Spolaor, Caro Fuchs, Paolo Cazzaniga, Uzay Kaymak, Daniela Besozzi, Marco S. Nobile
2020 J jnl
Surfing on Fitness Landscapes: A Boost on Optimization by Fourier Surrogate Modeling.
Entropy
Luca Manzoni, Daniele M. Papetti, Paolo Cazzaniga, Simone Spolaor, Giancarlo Mauri, Daniela Besozzi, Marco S. Nobile
2020 B conf
Which random is the best random? A study on sampling methods in Fourier surrogate modeling.
CEC
Marco S. Nobile, Simone Spolaor, Paolo Cazzaniga, Daniele M. Papetti, Daniela Besozzi, Daniel A. Ashlock, Luca Manzoni
2020 J jnl
cuProCell: GPU-Accelerated Analysis of Cell Proliferation With Flow Cytometry Data.
IEEE J. Biomed. Health Informatics
Marco S. Nobile, Eric Nisoli, Thalia Vlachou, Simone Spolaor, Paolo Cazzaniga, Giancarlo Mauri, Pier Giuseppe Pelicci, Daniela Besozzi
2020 B conf
pyFUME: a Python Package for Fuzzy Model Estimation.
FUZZ-IEEE
Caro Fuchs, Simone Spolaor, Marco S. Nobile, Uzay Kaymak
2019 — conf
A Novel Multi-objective Approach to Fuzzy Clustering.
SSCI
Simone Spolaor, Caro Fuchs, Uzay Kaymak, Marco S. Nobile
2019 B conf
A Swarm Intelligence Approach to Avoid Local Optima in Fuzzy C-Means Clustering.
FUZZ-IEEE
Caro Fuchs, Simone Spolaor, Marco S. Nobile, Uzay Kaymak
2019 J jnl
Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design.
Appl. Soft Comput.
Andrea Tangherloni, Simone Spolaor, Paolo Cazzaniga, Daniela Besozzi, Leonardo Rundo, Giancarlo Mauri, Marco S. Nobile
2019 — conf
Bridging Qualitative and Quantitative Modeling with FuzzX.
ICTCS
Simone Spolaor
2019 J jnl
GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
BMC Bioinform.
Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S. Nobile, Paolo Cazzaniga, Giancarlo Mauri, Pietro Liò, Ivan Merelli, Daniela Besozzi
2019 J jnl
Modeling cell proliferation in human acute myeloid leukemia xenografts.
Bioinform.
Marco S. Nobile, Thalia Vlachou, Simone Spolaor, Daniela Bossi, Paolo Cazzaniga, Luisa Lanfrancone, Giancarlo Mauri, Pier Giuseppe Pelicci, Daniela Besozzi
2019 C conf
ProCell: Investigating cell proliferation with Swarm Intelligence.
CIBCB
Marco S. Nobile, Thalia Vlachou, Simone Spolaor, Paolo Cazzaniga, Giancarlo Mauri, Pier Giuseppe Pelicci, Daniela Besozzi
2019 — ch.
Towards Human Cell Simulation.
High-Performance Modelling and Simulation for Big Data Applications
Simone Spolaor, Marco Gribaudo, Mauro Iacono, Tomas Kadavy, Zuzana Komínková Oplatková, Giancarlo Mauri, Sabri Pllana, Roman Senkerik, Natalija Stojanovic, Esko Turunen, Adam Viktorin, Salvatore Vitabile, Ales Zamuda, Marco S. Nobile
2018 B conf
Computational Intelligence for Parameter Estimation of Biochemical Systems.
CEC
Marco S. Nobile, Andrea Tangherloni, Leonardo Rundo, Simone Spolaor, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga
2018 C conf
GPU-Powered Multi-Swarm Parameter Estimation of Biological Systems: A Master-Slave Approach.
PDP
Andrea Tangherloni, Leonardo Rundo, Simone Spolaor, Paolo Cazzaniga, Marco S. Nobile
2018 — conf
High Performance Computing for Haplotyping: Models and Platforms.
Euro-Par Workshops
Andrea Tangherloni, Leonardo Rundo, Simone Spolaor, Marco S. Nobile, Ivan Merelli, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Pietro Liò
2017 J jnl
Efficient Simulation of Reaction Systems on Graphics Processing Units.
Fundam. Informaticae
Marco S. Nobile, Antonio E. Porreca, Simone Spolaor, Luca Manzoni, Paolo Cazzaniga, Giancarlo Mauri, Daniela Besozzi
2017 — conf
Estimation of Kinetic Reaction Constants: Exploiting Reboot Strategies to Improve PSO's Performance.
CIBB
Simone Spolaor, Andrea Tangherloni, Leonardo Rundo, Paolo Cazzaniga, Marco S. Nobile
2017 J jnl
GenHap: A novel computational method based on genetic algorithms for haplotype assembly.
PeerJ Prepr.
Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S. Nobile, Ivan Merelli, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri, Pietro Liò
2017 C conf
Reboot strategies in particle swarm optimization and their impact on parameter estimation of biochemical systems.
CIBCB
Simone Spolaor, Andrea Tangherloni, Leonardo Rundo, Marco S. Nobile, Paolo Cazzaniga