Simona Panni

17 papers Journal 11Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
GOFlowLLM - curating miRNA literature with large language models and flowcharts.
Bioinform.
Andrew Green, Nancy Ontiveros-Palacios, Isaac Jandalala, Simona Panni, Valerie Wood, Giulia Antonazzo, Helen Attrill, Alex Bateman, Blake A. Sweeney
2023 J jnl
The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study.
Database J. Biol. Databases Curation
Simona Panni, Kalpana Panneerselvam, Pablo Porras, Margaret J. Duesbury, Livia Perfetto, Luana Licata, Henning Hermjakob, Sandra E. Orchard
2022 J jnl
The IntAct database: efficient access to fine-grained molecular interaction data.
Nucleic Acids Res.
Noemi del-Toro, Anjali Shrivastava, Eliot Ragueneau, Birgit Meldal, Colin W. Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu, Bálint Mészáros, Xavier Watkins, Sangya Pundir, Luana Licata, Marta Iannuccelli, Matteo Pellegrini, Maria Jesus Martin, Simona Panni, Margaret J. Duesbury, Sylvain D. Vallet, Juri Rappsilber, Sylvie Ricard-Blum, Gianni Cesareni, Lukasz Salwínski, Sandra E. Orchard, Pablo Porras, Kalpana Panneerselvam, Henning Hermjakob
2021 J jnl
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
Nucleic Acids Res.
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
2021 J jnl
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
Bioinform.
Vasundra Touré, Steven Vercruysse, Marcio Luis Acencio, Ruth C. Lovering, Sandra E. Orchard, Glyn Bradley, Cristina Casals-Casas, Claudine Chaouiya, Noemi del-Toro, Åsmund Flobak, Pascale Gaudet, Henning Hermjakob, Charles Tapley Hoyt, Luana Licata, Astrid Lægreid, Christopher J. Mungall, Anne Niknejad, Simona Panni, Livia Perfetto, Pablo Porras, Dexter Pratt, Julio Saez-Rodriguez, Denis Thieffry, Paul D. Thomas, Dénes Türei, Martin Kuiper
2020 J jnl
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
Database J. Biol. Databases Curation
Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras
2018 J jnl
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
BMC Bioinform.
M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard
2015 J jnl
Searching for repetitions in biological networks: methods, resources and tools.
Briefings Bioinform.
Simona Panni, Simona E. Rombo
2011 J jnl
Asymmetric Comparison and Querying of Biological Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
2010 — conf
"Master-Slave" Biological Network Alignment.
ISBRA
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
2010 — conf
Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract).
SEBD
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
2009 J jnl
A technique to search for functional similarities in protein-protein interaction networks.
Int. J. Data Min. Bioinform.
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2009 — conf
Extracting similar sub-graphs across PPI networks.
ISCIS
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2009 J jnl
VirusMINT: a viral protein interaction database.
Nucleic Acids Res.
Andrew Chatr-aryamontri, Arnaud Céol, Daniele Peluso, Aurelio Nardozza, Simona Panni, Francesca Sacco, Michele Tinti, Alex Smolyar, Luisa Castagnoli, Marc Vidal, Michael E. Cusick, Gianni Cesareni
2008 — conf
Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach.
BIRD
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2008 — conf
Singling out functional similarities in graph databases.
SEBD
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2007 — conf
GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search.
BIBM
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo