Simona E. Rombo

76 papers A 1B 3C 6Misc 2Journal 35Unranked 24

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Burrows Wheeler Transform on a Large Scale: Algorithms Implemented in Apache Spark. Data Ylenia Galluzzo, Raffaele Giancarlo, Mario Randazzo, Simona E. Rombo
2026	J	`jnl`	Edge-Cloud Platform for Monitoring Sustainability Metrics in Organizational Contexts. Future Internet Maurizio Cellura, Ylenia Galluzzo, Domenico Garlisi, Fabrizio Giuliano, Domenico Panno, Simona E. Rombo
2025	J	`jnl`	BioSet2Vec: extraction of k-mer dictionaries from multiple sets of biological sequences via big data technologies. BMC Bioinform. Ylenia Galluzzo, Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
2024	J	`jnl`	Neighborhood based computational approaches for the prediction of lncRNA-disease associations. BMC Bioinform. Mariella Bonomo, Simona E. Rombo
2023	—	`conf`	Databases and Information Systems: Contributions from ADBIS 2023 Workshops and Doctoral Consortium. ADBIS (Short Papers) Adam Przybylek, Aleksandra Karpus, Allel Hadjali, Anton Dignös, Carmem S. Hara, Danae Pla Karidi, Ester Zumpano, Fabio Persia, Genoveva Vargas-Solar, George Papastefanatos, Giancarlo Sperlì, Giorgos Giannopoulos, Ivan Lukovic, Julien Aligon, Manolis Terrovitis, Marek Grzegorowski, Mariella Bonomo, Mirian Halfeld Ferrari Alves, Nicolas Labroche, Paul Monsarrat, Richard Chbeir, Sana Sellami, Seshu Tirupathi, Simona E. Rombo, Slavica Kordic, Sonja Ristic, Tommaso Di Noia, Torben Bach Pedersen, Vincenzo Moscato
2023	J	`jnl`	Discriminative pattern discovery for the characterization of different network populations. Bioinform. Fabio Fassetti, Simona E. Rombo, Cristina Serrao
2023	—	`conf`	Prediction of User-Brand Associations Based on Sentiment Analysis. EDBT/ICDT Workshops Mariella Bonomo, Simona E. Rombo, Filippo Rotolo
2022	—	`conf`	A Collaborative Filtering Approach for Drug Repurposing. ADBIS (Short Papers) Simone Contini, Simona E. Rombo
2022	J	`jnl`	DIAMIN: a software library for the distributed analysis of large-scale molecular interaction networks. BMC Bioinform. Lorenzo Di Rocco, Umberto Ferraro Petrillo, Simona E. Rombo
2022	J	`jnl`	Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis. Briefings Bioinform. Mariella Bonomo, Raffaele Giancarlo, Daniele Greco, Simona E. Rombo
2021	J	`jnl`	Burrows Wheeler Transform on a Large Scale: Algorithms Implemented in Apache Spark. CoRR Ylenia Galluzzo, Raffaele Giancarlo, Mario Randazzo, Simona E. Rombo
2021	J	`jnl`	Integrative bioinformatics and omics data source interoperability in the next-generation sequencing era - Editorial. Briefings Bioinform. Simona E. Rombo, Domenico Ursino
2020	—	`conf`	A Big Data Approach for Sequences Indexing on the Cloud via Burrows Wheeler Transform. AAI4H@ECAI Mario Randazzo, Simona E. Rombo
2020	J	`jnl`	A Big Data Approach for Sequences Indexing on the Cloud via Burrows Wheeler Transform. CoRR Mario Randazzo, Simona E. Rombo
2020	—	`conf`	Identifying the k Best Targets for an Advertisement Campaign via Online Social Networks. KDIR Mariella Bonomo, Armando La Placa, Simona E. Rombo
2020	J	`jnl`	Identifying the k Best Targets for an Advertisement Campaign via Online Social Networks. CoRR Mariella Bonomo, Armando La Placa, Simona E. Rombo
2020	—	`conf`	Prediction of lncRNA-Disease Associations from Tripartite Graphs. Poly/DMAH@VLDB Mariella Bonomo, Armando La Placa, Simona E. Rombo
2019	J	`jnl`	A Semantic Approach for User-Brand Targeting in On-Line Social Networks. CoRR Mariella Bonomo, Gaspare Ciaccio, Andrea De Salve, Simona E. Rombo
2019	—	`ch.`	Algorithms for Graph and Network Analysis: Clustering and Search of Motifs in Graphs. Encyclopedia of Bioinformatics and Computational Biology (1) Clara Pizzuti, Simona E. Rombo
2019	—	`ch.`	Algorithms for Graph and Network Analysis: Graph Alignment. Encyclopedia of Bioinformatics and Computational Biology (1) Luigi Palopoli, Simona E. Rombo
2019	J	`jnl`	Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics. BMC Bioinform. Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo
2019	B	`conf`	Customer recommendation based on profile matching and customized campaigns in on-line social networks. ASONAM Mariella Bonomo, Gaspare Ciaccio, Andrea De Salve, Simona E. Rombo
2019	J	`jnl`	DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes. Theor. Comput. Sci. Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
2019	J	`jnl`	FEDRO: a software tool for the automatic discovery of candidate ORFs in plants with c →u RNA editing. BMC Bioinform. Fabio Fassetti, Claudia Giallombardo, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Adolfo Saiardi
2019	—	`ch.`	Network Centralities and Node Ranking. Encyclopedia of Bioinformatics and Computational Biology (1) Raffaele Giancarlo, Daniele Greco, Francesco Landolina, Simona E. Rombo
2018	—	`conf`	An Integrative Framework for the Construction of Big Functional Networks. BIBM Claudia Giallombardo, Salvatore Morfea, Simona E. Rombo
2018	J	`jnl`	Analyzing Big Datasets of Genomic Sequences: Fast and Scalable Collection of k-mer Statistics. CoRR Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo
2018	—	`conf`	Contributions from ADBIS 2018 Workshops. ADBIS (Short Papers and Workshops) Udo Bub, Ajantha Dahanayake, Jérôme Darmont, Claudia Diamantini, Fabio Fassetti, Eduardo Fermé, Nadia Kabachi, Ilaria Matteucci, Bálint Molnár, Sham Navathe, Ermelinda Oro, Marinella Petrocchi, Simona E. Rombo, Massimo Ruffolo, Angelo Spognardi, Bernhard Thalheim, Domenico Ursino
2018	J	`jnl`	Efficient Algorithms for Sequence Analysis with Entropic Profiles. IEEE ACM Trans. Comput. Biol. Bioinform. Cinzia Pizzi, Mattia Ornamenti, Simone Spangaro, Simona E. Rombo, Laxmi Parida
2018	—	`conf`	Efficient Classification of Digital Images based on Pattern-features. PhyCS Angelo Furfaro, Simona E. Rombo
2018	J	`jnl`	In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes. Bioinform. Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
2017	J	`jnl`	2D Motif Basis Applied to the Classification of Digital Images. Comput. J. Angelo Furfaro, Maria Carmela Groccia, Simona E. Rombo
2017	J	`jnl`	Automatic simulation of RNA editing in plants for the identification of novel putative Open Reading Frames. PeerJ Prepr. Fabio Fassetti, Claudia Giallombardo, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Pierluigi Ruffolo, Adolfo Saiardi
2017	—	`book`	Discriminative Pattern Discovery on Biological Networks Fabio Fassetti, Simona E. Rombo, Cristina Serrao
2017	J	`jnl`	Foreword: Algorithms, Strings and Theoretical Approaches in the Big Data Era - Special Issue in Honor of the 60th Birthday of Professor Raffaele Giancarlo. Theor. Comput. Sci. Simona E. Rombo, Filippo Utro
2016	—	`conf`	Discovering New Proteins in Plant Mitochondria by RNA Editing Simulation. BIOINFORMATICS Fabio Fassetti, Claudia Giallombardo, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Adolfo Saiardi
2016	Misc	`conf`	Discovering discriminative graph patterns from gene expression data. SAC Fabio Fassetti, Simona E. Rombo, Cristina Serrao
2015	J	`jnl`	Epigenomic Bioinform. Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
2015	J	`jnl`	Searching for repetitions in biological networks: methods, resources and tools. Briefings Bioinform. Simona Panni, Simona E. Rombo
2014	J	`jnl`	Algorithms and tools for protein-protein interaction networks clustering, with a special focus on population-based stochastic methods. Bioinform. Clara Pizzuti, Simona E. Rombo
2014	J	`jnl`	An evolutionary restricted neighborhood search clustering approach for PPI networks. Neurocomputing Clara Pizzuti, Simona E. Rombo
2014	J	`jnl`	Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies. Briefings Bioinform. Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
2014	C	`conf`	Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. WABI Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
2014	J	`jnl`	Irredundant tandem motifs. Theor. Comput. Sci. Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
2013	C	`conf`	Image Classification Based on 2D Feature Motifs. FQAS Angelo Furfaro, Maria Carmela Groccia, Simona E. Rombo
2013	—	`conf`	Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation Perspective. PRIB Clara Pizzuti, Simona E. Rombo
2012	J	`jnl`	A Coclustering Approach for Mining Large Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Clara Pizzuti, Simona E. Rombo
2012	Misc	`conf`	Approximate matching over biological RDF graphs. SAC Roberto De Virgilio, Simona E. Rombo
2012	C	`conf`	Characterization and Extraction of Irredundant Tandem Motifs. SPIRE Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
2012	—	`conf`	Complex Detection in Protein-Protein Interaction Networks: A Compact Overview for Researchers and Practitioners. EvoBIO Clara Pizzuti, Simona E. Rombo, Elena Marchiori
2012	A	`conf`	Experimental evaluation of topological-based fitness functions to detect complexes in PPI networks. GECCO Clara Pizzuti, Simona E. Rombo
2012	J	`jnl`	Extracting string motif bases for quorum higher than two. Theor. Comput. Sci. Simona E. Rombo
2011	J	`jnl`	Asymmetric Comparison and Querying of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
2011	B	`conf`	Image Compression by 2D Motif Basis. DCC Alessia Amelio, Alberto Apostolico, Simona E. Rombo
2010	—	`conf`	"Master-Slave" Biological Network Alignment. ISBRA Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
2010	—	`conf`	Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract). SEBD Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
2010	—	`conf`	IP6K Gene Discovery in Plant mtDNA. CIBB Fabio Fassetti, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Adolfo Saiardi
2010	J	`jnl`	New Trends in Graph Mining: Structural and Node-Colored Network Motifs. Int. J. Knowl. Discov. Bioinform. Francesco Bruno, Luigi Palopoli, Simona E. Rombo
2009	—	`ch.`	A Summary of Genomic Databases: Overview and Discussion. Biomedical Data and Applications Erika De Francesco, Giuliana Di Santo, Luigi Palopoli, Simona E. Rombo
2009	J	`jnl`	A technique to search for functional similarities in protein-protein interaction networks. Int. J. Data Min. Bioinform. Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2009	—	`conf`	Experimental Evaluation of Protein Secondary Structure Predictors. ICCS (1) Luca Miceli, Luigi Palopoli, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri
2009	—	`conf`	Extracting similar sub-graphs across PPI networks. ISCIS Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2009	J	`jnl`	Improving protein secondary structure predictions by prediction fusion. Inf. Fusion Luigi Palopoli, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri
2009	J	`jnl`	Optimal extraction of motif patterns in 2D. Inf. Process. Lett. Simona E. Rombo
2008	—	`conf`	Discovering meaningful protein-protein interaction modules by a co-clustering based approach. SEBD Clara Pizzuti, Simona E. Rombo
2008	J	`jnl`	Motif patterns in 2D. Theor. Comput. Sci. Alberto Apostolico, Laxmi Parida, Simona E. Rombo
2008	—	`conf`	Multi-functional Protein Clustering in PPI Networks . BIRD Clara Pizzuti, Simona E. Rombo
2008	—	`conf`	Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach. BIRD Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2008	—	`conf`	Singling out functional similarities in graph databases. SEBD Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2007	—	`conf`	GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search. BIBM Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
2007	C	`conf`	Protein Data Condensation for Effective Quaternary Structure Classification. IDEAL Fabrizio Angiulli, Valeria Fionda, Simona E. Rombo
2006	B	`conf`	JSSPrediction: a Framework to Predict Protein Secondary Structures Using Integration. CBMS Luigi Palopoli, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri
2005	C	`conf`	Flexible Pattern Discovery with (Extended) Disjunctive Logic Programming. ISMIS Luigi Palopoli, Simona E. Rombo, Giorgio Terracina
2004	—	`conf`	Derivazione efficiente di pattern strutturati frequenti da database di natura biologica. SEBD Pasquale Grimaldi, Simona E. Rombo, Giorgio Terracina, Luigi Palopoli
2004	C	`conf`	Discovering Representative Models in Large Time Series Databases. FQAS Simona E. Rombo, Giorgio Terracina
2004	—	`conf`	Riduzione del traffico nei sistemi P2P: un approccio semantico. SEBD Francesco Buccafurri, Gianluca Lax, Simona E. Rombo