Simona Cocco - RankMe

31 papers A* 2Journal 28

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Linking brain and behavior states in Zebrafish Larvae locomotion using hidden Markov models. PLoS Comput. Biol. Mattéo Dommanget-Kott, Jorge Fernandez-de-Cossío-Diaz, Monica Coraggioso, Volker Bormuth, Rémi Monasson, Georges Debrégeas, Simona Cocco
2024	A*	`conf`	Accelerated Sampling with Stacked Restricted Boltzmann Machines. ICLR Jorge Fernandez-de-Cossío-Diaz, Clément Roussel, Simona Cocco, Rémi Monasson
2024	A*	`conf`	Restoring balance: principled under/oversampling of data for optimal classification. ICML Emanuele Loffredo, Mauro Pastore, Simona Cocco, Rémi Monasson
2024	J	`jnl`	Restoring balance: principled under/oversampling of data for optimal classification. CoRR Emanuele Loffredo, Mauro Pastore, Simona Cocco, Rémi Monasson
2024	J	`jnl`	Unlearning regularization for Boltzmann machines. Mach. Learn. Sci. Technol. Enrico Ventura, Simona Cocco, Rémi Monasson, Francesco Zamponi
2023	J	`jnl`	Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment. PLoS Comput. Biol. Cyril Malbranke, William Rostain, Florence Depardieu, Simona Cocco, Rémi Monasson, David Bikard
2023	J	`jnl`	Infer global, predict local: Quantity-relevance trade-off in protein fitness predictions from sequence data. PLoS Comput. Biol. Lorenzo Posani, Francesca Rizzato, Rémi Monasson, Simona Cocco
2022	J	`jnl`	Disentangling representations in Restricted Boltzmann Machines without adversaries. CoRR Jorge Fernandez-de-Cossío-Diaz, Simona Cocco, Rémi Monasson
2022	J	`jnl`	Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection. PLoS Comput. Biol. Andrea Di Gioacchino, Jonah Procyk, Marco Molari, John S. Schreck, Yu Zhou, Yan Liu, Rémi Monasson, Simona Cocco, Petr Sulc
2021	J	`jnl`	Barriers and Dynamical Paths in Alternating Gibbs Sampling of Restricted Boltzmann Machines. CoRR Clément Roussel, Simona Cocco, Rémi Monasson
2021	J	`jnl`	Improving sequence-based modeling of protein families using secondary-structure quality assessment. Bioinform. Cyril Malbranke, David Bikard, Simona Cocco, Rémi Monasson
2021	J	`jnl`	Optimal regularizations for data generation with probabilistic graphical models. CoRR Arnaud Fanthomme, Francesca Rizzato, Simona Cocco, Rémi Monasson
2021	J	`jnl`	Parameters and determinants of responses to selection in antibody libraries. PLoS Comput. Biol. Steven Schulz, Sebastien Boyer, Matteo Smerlak, Simona Cocco, Rémi Monasson, Clément Nizak, Olivier Rivoire
2021	J	`jnl`	Probing T-cell response by sequence-based probabilistic modeling. PLoS Comput. Biol. Barbara Bravi, Vinod P. Balachandran, Benjamin D. Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson, Simona Cocco
2019	J	`jnl`	'Place-cell' emergence and learning of invariant data with restricted Boltzmann machines: breaking and dynamical restoration of continuous symmetries in the weight space. CoRR Moshir Harsh, Jérôme Tubiana, Simona Cocco, Rémi Monasson
2019	J	`jnl`	Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins. CoRR Jérôme Tubiana, Simona Cocco, Rémi Monasson
2019	J	`jnl`	Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins. Neural Comput. Jérôme Tubiana, Simona Cocco, Rémi Monasson
2018	J	`jnl`	Integration and multiplexing of positional and contextual information by the hippocampal network. PLoS Comput. Biol. Lorenzo Posani, Simona Cocco, Rémi Monasson
2017	J	`jnl`	Functional connectivity models for decoding of spatial representations from hippocampal CA1 recordings. J. Comput. Neurosci. Lorenzo Posani, Simona Cocco, Karel Jezek, Rémi Monasson
2016	J	`jnl`	ACE: adaptive cluster expansion for maximum entropy graphical model inference. Bioinform. John P. Barton, Eleonora De Leonardis, Alice Coucke, Simona Cocco
2016	J	`jnl`	Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models. PLoS Comput. Biol. Hugo Jacquin, Amy Gilson, Eugene I. Shakhnovich, Simona Cocco, Rémi Monasson
2016	J	`jnl`	Neural assemblies revealed by inferred connectivity-based models of prefrontal cortex recordings. J. Comput. Neurosci. Gaia Tavoni, Simona Cocco, Rémi Monasson
2013	J	`jnl`	From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction. PLoS Comput. Biol. Simona Cocco, Rémi Monasson, Martin Weigt
2011	J	`jnl`	Adaptive Cluster Expansion for Inferring Boltzmann Machines with Noisy Data CoRR Simona Cocco, Rémi Monasson
2011	J	`jnl`	Fast inference of interactions in assemblies of stochastic integrate-and-fire neurons from spike recordings. J. Comput. Neurosci. Rémi Monasson, Simona Cocco
2006	—	`ch.`	Analyzing Search Algorithms with Physical Methods. Computational Complexity and Statistical Physics Simona Cocco, Rémi Monasson, Andrea Montanari, Guilhem Semerjian
2005	J	`jnl`	Restarts and exponential acceleration of the Davis-Putnam-Loveland-Logemann algorithm: A large deviation analysis of the generalized unit clause heuristic for random 3-SAT. Ann. Math. Artif. Intell. Simona Cocco, Rémi Monasson
2004	J	`jnl`	Heuristic average-case analysis of the backtrack resolution of random 3-Satisfiability instances CoRR Simona Cocco, Rémi Monasson
2004	J	`jnl`	Heuristic average-case analysis of the backtrack resolution of random 3-satisfiability instances. Theor. Comput. Sci. Simona Cocco, Rémi Monasson
2003	J	`jnl`	Approximate analysis of search algorithms with "physical" methods CoRR Simona Cocco, Rémi Monasson, Andrea Montanari, Guilhem Semerjian
2001	J	`jnl`	Statistical physics analysis of the backtrack resolution of random 3-SAT instances. Electron. Notes Discret. Math. Simona Cocco, Rémi Monasson