Simon Tavaré

31 papers A* 1Misc 1Journal 28Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Approximate Bayesian computation sequential Monte Carlo via random forests.
Stat. Comput.
Khanh N. Dinh, Cécile Liu, Zijin Xiang, Zhihan Liu, Simon Tavaré
2025 J jnl
CINner: Modeling and simulation of chromosomal instability in cancer at single-cell resolution.
PLoS Comput. Biol.
Khanh N. Dinh, Ignacio Vázquez-García, Andrew Chan, Rhea Malhotra, Adam Weiner, Andrew W. McPherson, Simon Tavaré
2023 A* conf
Gradient Estimation for Binary Latent Variables via Gradient Variance Clipping.
AAAI
Russell Z. Kunes, Mingzhang Yin, Max Land, Doron Haviv, Dana Pe'er, Simon Tavaré
2022 J jnl
A note on the Screaming Toes game.
J. Appl. Probab.
Simon Tavaré
2022 J jnl
Gradient Estimation for Binary Latent Variables via Gradient Variance Clipping.
CoRR
Russell Z. Kunes, Mingzhang Yin, Max Land, Doron Haviv, Dana Pe'er, Simon Tavaré
2016 J jnl
HDTD: analyzing multi-tissue gene expression data.
Bioinform.
Anestis Touloumis, John C. Marioni, Simon Tavaré
2014 J jnl
Flexible analysis of RNA-seq data using mixed effects models.
Bioinform.
Ernest Turro, William J. Astle, Simon Tavaré
2014 J jnl
Normalization of metabolomics data with applications to correlation maps.
Bioinform.
Alexandra Jauhiainen, Basetti Madhu, Masako Narita, Masashi Narita, John Griffiths, Simon Tavaré
2013 J jnl
Automated quantification of the schooling behaviour of sticklebacks.
EURASIP J. Image Video Process.
Reza Ardekani, Anna K. Greenwood, Catherine L. Peichel, Simon Tavaré
2011 J jnl
BayesPeak - an R package for analysing ChIP-seq data.
Bioinform.
Jonathan M. Cairns, Christiana Spyrou, Rory Stark, Mike L. Smith, Andy G. Lynch, Simon Tavaré
2011 J jnl
Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors.
PLoS Comput. Biol.
Andrea Sottoriva, Louis Vermeulen, Simon Tavaré
2010 J jnl
CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data.
Bioinform.
Sergii Ivakhno, Simon Tavaré
2010 J jnl
CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data.
Bioinform.
Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré
2010 J jnl
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.
BMC Bioinform.
Matthew E. Ritchie, Matthew S. Forrest, Antigone S. Dimas, Caroline Daelemans, Emmanouil T. Dermitzakis, Panagiotis Deloukas, Simon Tavaré
2010 J jnl
Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data.
BMC Bioinform.
Mike L. Smith, Mark J. Dunning, Simon Tavaré, Andy G. Lynch
2010 — conf
Integrating Approximate Bayesian Computation with Complex Agent-Based Models for Cancer Research.
COMPSTAT
Andrea Sottoriva, Simon Tavaré
2009 J jnl
BayesPeak: Bayesian analysis of ChIP-seq data.
BMC Bioinform.
Christiana Spyrou, Rory Stark, Andy G. Lynch, Simon Tavaré
2009 J jnl
Finding Behavioral Motifs in Fly Trajectories.
Commun. Inf. Syst.
Dhruv Grover, Simon Tavaré
2009 J jnl
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.
Bioinform.
Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry
2009 J jnl
Strategies for analyzing highly enriched IP-chip datasets.
BMC Bioinform.
Simon R. V. Knott, Christopher J. Viggiani, Oscar M. Aparicio, Simon Tavaré
2008 J jnl
Statistical issues in the analysis of Illumina data.
BMC Bioinform.
Mark J. Dunning, Nuno L. Barbosa-Morais, Andy G. Lynch, Simon Tavaré, Matthew E. Ritchie
2007 J jnl
The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns.
PLoS Comput. Biol.
Pierre Nicolas, Kyoung-Mee Kim, Darryl Shibata, Simon Tavaré
2007 J jnl
Using expression arrays for copy number detection: an example from E. coli.
BMC Bioinform.
Dmitriy Skvortsov, Diana Abdueva, Michael E. Stitzer, Steven E. Finkel, Simon Tavaré
2007 J jnl
beadarray: R classes and methods for Illumina bead-based data.
Bioinform.
Mark J. Dunning, Mike L. Smith, Matthew E. Ritchie, Simon Tavaré
2006 J jnl
A Tale of Three Couplings: Poisson-Dirichlet and GEM Approximations for Random Permutations.
Comb. Probab. Comput.
Richard Arratia, Andrew D. Barbour, Simon Tavaré
2006 J jnl
BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data.
Bioinform.
John C. Marioni, Natalie P. Thorne, Simon Tavaré
2001 Misc conf
A Model for Phylogenetic Inference Using Structural and Chemical Covariates.
Pacific Symposium on Biocomputing
Simon Tavaré, Dean C. Adams, Olivier Fedrigo, Gavin J. P. Naylor
2000 J jnl
The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project.
J. Comput. Biol.
Sophie Schbath, Nathalie Bossard, Simon Tavaré
1999 J jnl
The Poisson-Dirichlet Distribution And The Scale-Invariant Poisson Process.
Comb. Probab. Comput.
Richard Arratia, Andrew D. Barbour, Simon Tavaré
1994 J jnl
A Rate for the Erdös-Turán Law.
Comb. Probab. Comput.
Andrew D. Barbour, Simon Tavaré
1992 J jnl
Limit Theorems for Combinatorial Structures via Discrete Process Approximations.
Random Struct. Algorithms
Richard Arratia, Simon Tavaré