Simon Shaw

22 papers Journal 22
YearRankTypeTitle / Venue / Authors
2025 J jnl
getphylo: rapid and automatic generation of multi-locus phylogenetic trees.
BMC Bioinform.
Thomas J. Booth, Simon Shaw, Pablo Cruz-Morales, Tilmann Weber
2023 J jnl
A Priori Analysis of a Symmetric Interior Penalty Discontinuous Galerkin Finite Element Method for a Dynamic Linear Viscoelasticity Model.
Comput. Methods Appl. Math.
Yongseok Jang, Simon Shaw
2023 J jnl
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.
Nucleic Acids Res.
Kai Blin, Simon Shaw, Hannah E. Augustijn, Zachary L. Reitz, Friederike Biermann, Mohammad Alanjary, Artem Fetter, Barbara R. Terlouw, William W. Metcalf, Eric J. N. Helfrich, Gilles P. van Wezel, Marnix H. Medema, Tilmann Weber
2022 J jnl
Finite element approximation and analysis of a viscoelastic scalar wave equation with internal variable formulations.
J. Comput. Appl. Math.
Yongseok Jang, Simon Shaw
2021 J jnl
A Priori Analysis of Discontinuous Galerkin Finite Element Method for Dynamic Viscoelastic Models.
CoRR
Yongseok Jang, Simon Shaw
2021 J jnl
A priori error analysis for a finite element approximation of dynamic viscoelasticity problems involving a fractional order integro-differential constitutive law.
Adv. Comput. Math.
Yongseok Jang, Simon Shaw
2021 J jnl
BiG-FAM: the biosynthetic gene cluster families database.
Nucleic Acids Res.
Satria A. Kautsar, Kai Blin, Simon Shaw, Tilmann Weber, Marnix H. Medema
2021 J jnl
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes.
Nucleic Acids Res.
Kai Blin, Simon Shaw, Satria A. Kautsar, Marnix H. Medema, Tilmann Weber
2021 J jnl
antiSMASH 6.0: improving cluster detection and comparison capabilities.
Nucleic Acids Res.
Kai Blin, Simon Shaw, Alexander M. Kloosterman, Zachary Charlop-Powers, Gilles P. van Wezel, Marnix H. Medema, Tilmann Weber
2020 J jnl
A priori error analysis for a finite element approximation of dynamic viscoelasticity problems involving a fractional order integro-differential constitutive law.
CoRR
Yongseok Jang, Simon Shaw
2020 J jnl
Finite Element Approximation and Analysis of Viscoelastic Wave Propagation with Internal Variable Formulations.
CoRR
Yongseok Jang, Simon Shaw
2020 J jnl
MIBiG 2.0: a repository for biosynthetic gene clusters of known function.
Nucleic Acids Res.
Satria A. Kautsar, Kai Blin, Simon Shaw, Jorge C. Navarro-Muñoz, Barbara R. Terlouw, Justin J. J. van der Hooft, Jeffrey A. van Santen, Vittorio Tracanna, Hernando G. Suarez Duran, Victòria Pascal Andreu, Nelly Sélem-Mojica, Mohammad Alanjary, Serina L. Robinson, George Lund, Samuel C. Epstein, Ashley C. Sisto, Louise K. Charkoudian, Jérôme Collemare, Roger G. Linington, Tilmann Weber, Marnix H. Medema
2019 J jnl
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.
Nucleic Acids Res.
Kai Blin, Simon Shaw, Katharina Steinke, Rasmus Villebro, Nadine Ziemert, Sang Yup Lee, Marnix H. Medema, Tilmann Weber
2015 J jnl
Spatial-Temporal Modelling and Analysis of Bacterial Colonies with Phase Variable Genes.
ACM Trans. Model. Comput. Simul.
Ovidiu Parvu, David R. Gilbert, Monika Heiner, Fei Liu, Nigel J. Saunders, Simon Shaw
2014 J jnl
Time-Decoupled High Order Continuous Space-Time Finite Element Schemes for the Heat Equation.
SIAM J. Sci. Comput.
Carola Kruse, Simon Shaw
2010 J jnl
Finite Element Approximation of Maxwell's Equations with Debye Memory.
Adv. Numer. Anal.
Simon Shaw
2006 J jnl
Discontinuous Galerkin Finite Element Approximation of Nonlinear Non-Fickian Diffusion in Viscoelastic Polymers.
SIAM J. Numer. Anal.
Beatrice Riviere, Simon Shaw
2003 J jnl
Discontinuous Galerkin finite element methods for linear elasticity and quasistatic linear viscoelasticity.
Numerische Mathematik
Beatrice Riviere, Simon Shaw, Mary F. Wheeler, John R. Whiteman
2001 J jnl
Optimal long-time L
Numerische Mathematik
Simon Shaw, John R. Whiteman
2000 J jnl
Negative norm error control for second-kind convolution Volterra equations.
Numerische Mathematik
Simon Shaw, John R. Whiteman
2000 J jnl
Numerical Solution of Linear Quasistatic Hereditary Viscoelasticity Problems.
SIAM J. Numer. Anal.
Simon Shaw, John R. Whiteman
1996 J jnl
Towards adaptive finite element schemes for partial differential Volterra equation solvers.
Adv. Comput. Math.
Simon Shaw, John R. Whiteman