Simon Rogers

64 papers A* 10A 3C 1Journal 40Unranked 9
YearRankTypeTitle / Venue / Authors
2024 J jnl
Development and assessment of a machine learning tool for predicting emergency admission in Scotland.
npj Digit. Medicine
James Liley, Gergo Bohner, Samuel R. Emerson, Bilal A. Mateen, Katie Borland, David Carr, Scott Heald, Samuel D. Oduro, Jill Ireland, Keith Moffat, Rachel Porteous, Stephen Riddell, Simon Rogers, Ioanna Thoma, Nathan Cunningham, Chris Holmes, Katrina Payne, Sebastian J. Vollmer, Catalina A. Vallejos, Louis J. M. Aslett
2024 J jnl
Publisher Correction: Development and assessment of a machine learning tool for predicting emergency admission in Scotland.
npj Digit. Medicine
James Liley, Gergo Bohner, Samuel R. Emerson, Bilal A. Mateen, Katie Borland, David Carr, Scott Heald, Samuel D. Oduro, Jill Ireland, Keith Moffat, Rachel Porteous, Stephen Riddell, Simon Rogers, Ioanna Thoma, Nathan Cunningham, Chris Holmes, Katrina Payne, Sebastian J. Vollmer, Catalina A. Vallejos, Louis J. M. Aslett
2023 J jnl
TopNEXt: automatic DDA exclusion framework for multi-sample mass spectrometry experiments.
Bioinform.
Ross McBride, Joe Wandy, Stefan Weidt, Simon Rogers, Vinny Davies, Rónán Daly, Kevin Bryson
2022 J jnl
GRAIMATTER Green Paper: Recommendations for disclosure control of trained Machine Learning (ML) models from Trusted Research Environments (TREs).
CoRR
Emily R. Jefferson, James Liley, Maeve Malone, Smarti Reel, Alba Crespi-Boixader, Xaroula Kerasidou, Francesco Tava, Andrew McCarthy, Richard Preen, Alberto Blanco-Justicia, Esma Mansouri-Benssassi, Josep Domingo-Ferrer, Jillian Beggs, Antony Chuter, Christian Cole, Felix Ritchie, Angela Daly, Simon Rogers, Jim Smith
2022 J jnl
Safe machine learning model release from Trusted Research Environments: The AI-SDC package.
CoRR
Jim Smith, Richard John Preen, Andrew McCarthy, Alba Crespi-Boixader, James Liley, Simon Rogers
2022 J jnl
Using topic modeling to detect cellular crosstalk in scRNA-seq.
PLoS Comput. Biol.
Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D. Otto
2022 J jnl
ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics.
J. Open Source Softw.
Joe Wandy, Vinny Davies, Ross McBride, Stefan Weidt, Simon Rogers, Rónán Daly
2021 J jnl
Forward and Inverse models in HCI: Physical simulation and deep learning for inferring 3D finger pose.
CoRR
Roderick Murray-Smith, John H. Williamson, Andrew Ramsay, Francesco Tonolini, Simon Rogers, Antoine Loriette
2021 J jnl
Machine Learning Models Disclosure from Trusted Research Environments (TRE), Challenges and Opportunities.
CoRR
Esma Mansouri-Benssassi, Simon Rogers, Jim Smith, Felix Ritchie, Emily R. Jefferson
2021 J jnl
PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells.
PLoS Comput. Biol.
Simon Rogers, Virgilio L. Lew
2021 J jnl
Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification.
Bioinform.
Eric Bach, Simon Rogers, John Williamson, Juho Rousu
2021 J jnl
R package for statistical inference in dynamical systems using kernel based gradient matching: KGode.
Comput. Stat.
Mu Niu, Joe Wandy, Rónán Daly, Simon Rogers, Dirk Husmeier
2021 J jnl
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions.
PLoS Comput. Biol.
Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers
2021 J jnl
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships.
PLoS Comput. Biol.
Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, Faruk Diblen, Simon Rogers, Justin J. J. van der Hooft
2021 J jnl
Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits.
PLoS Comput. Biol.
Simon Rogers, Virgilio L. Lew
2020 J jnl
Per-Host DDoS Mitigation by Direct-Control Reinforcement Learning.
IEEE Trans. Netw. Serv. Manag.
Kyle A. Simpson, Simon Rogers, Dimitrios P. Pezaros
2020 J jnl
Predicting host taxonomic information from viral genomes: A comparison of feature representations.
PLoS Comput. Biol.
Francesca Young, Simon Rogers, David L. Robertson
2020 J jnl
matchms - processing and similarity evaluation of mass spectrometry data.
J. Open Source Softw.
Florian Huber, Stefan Verhoeven, Christiaan Meijer, Hanno Spreeuw, Efraín Castilla, Cunliang Geng, Justin J. J. van der Hooft, Simon Rogers, Adam Belloum, Faruk Diblen, Jurriaan H. Spaaks
2018 J jnl
Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture.
IEEE Access
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Jan Paul Siebert
2018 J jnl
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry.
Bioinform.
Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael P. Barrett, Simon Rogers
2018 J jnl
ShinyKGode: an interactive application for ODE parameter inference using gradient matching.
Bioinform.
Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier
2018 J jnl
Statistical inference in mechanistic models: time warping for improved gradient matching.
Comput. Stat.
Mu Niu, Benn Macdonald, Simon Rogers, Maurizio Filippone, Dirk Husmeier
2017 J jnl
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.
Bioinform.
Yoann Gloaguen, Fraser R. Morton, Rónán Daly, Ross Gurden, Simon Rogers, Joe Wandy, David Wilson, Michael P. Barrett, Karl E. V. Burgess
2017 — conf
Pre-interaction identification by dynamic grip classification.
IMCOM
Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson
2017 J jnl
Single-Shot Clothing Category Recognition in Free-Configurations with Application to Autonomous Clothes Sorting.
CoRR
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Rustam Stolkin, J. Paul Siebert
2017 A conf
Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting.
IROS
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Rustam Stolkin, J. Paul Siebert
2016 A* conf
Detecting Swipe Errors on Touchscreens using Grip Modulation.
CHI
Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson
2016 A* conf
Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching.
ICML
Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier
2016 — conf
Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching.
CIBB
Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier
2016 A* conf
Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception.
ICRA
Li Sun, Simon Rogers, Gerardo Aragon-Camarasa, J. Paul Siebert
2016 J jnl
Robot Vision Architecture for Autonomous Clothes Manipulation.
CoRR
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert
2015 A* conf
Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening.
ICRA
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert
2015 J jnl
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets.
Bioinform.
Joe Wandy, Rónán Daly, Rainer Breitling, Simon Rogers
2014 A* conf
28 frames later: predicting screen touches from back-of-device grip changes.
CHI
Mohammad Faizuddin Mohd Noor, Andrew Ramsay, Stephen Hughes, Simon Rogers, John Williamson, Roderick Murray-Smith
2014 A conf
Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System.
ECIR
Edwin Thuma, Simon Rogers, Iadh Ounis
2014 J jnl
MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach.
Bioinform.
Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling
2014 J jnl
Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations.
Bioinform.
Tommi Suvitaival, Simon Rogers, Samuel Kaski
2014 J jnl
Stronger findings from mass spectral data through multi-peak modeling.
BMC Bioinform.
Tommi Suvitaival, Simon Rogers, Samuel Kaski
2014 A* conf
Uncertain text entry on mobile devices.
CHI
Daryl Weir, Henning Pohl, Simon Rogers, Keith Vertanen, Per Ola Kristensson
2013 — conf
A Heuristic-Based Approach for Flattening Wrinkled Clothes.
TAROS
Li Sun, Gerardo Aragon-Camarasa, W. Paul Cockshott, Simon Rogers, J. Paul Siebert
2013 — conf
Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system.
OAIR
Edwin Thuma, Simon Rogers, Iadh Ounis
2013 C conf
Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System.
NLDB
Edwin Thuma, Simon Rogers, Iadh Ounis
2013 J jnl
Investigating the Disagreement Between Clinicians' Ratings of Patients in ICUs.
IEEE J. Biomed. Health Informatics
Simon Rogers, Derek H. Sleeman, John Kinsella
2013 A conf
ODE parameter inference using adaptive gradient matching with Gaussian processes.
AISTATS
Frank Dondelinger, Dirk Husmeier, Simon Rogers, Maurizio Filippone
2013 — conf
Sparse selection of training data for touch correction systems.
Mobile HCI
Daryl Weir, Daniel Buschek, Simon Rogers
2013 — conf
User-specific touch models in a cross-device context.
Mobile HCI
Daniel Buschek, Simon Rogers, Roderick Murray-Smith
2012 A* conf
A user-specific machine learning approach for improving touch accuracy on mobile devices.
UIST
Daryl Weir, Simon Rogers, Roderick Murray-Smith, Markus Löchtefeld
2011 — book
A First Course in Machine Learning.
Simon Rogers, Mark A. Girolami
2011 A* conf
AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation.
CHI
Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith
2011 J jnl
Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation.
Int. J. Data Min. Bioinform.
Tamara Polajnar, Simon Rogers, Mark A. Girolami
2010 A* conf
FingerCloud: uncertainty and autonomy handover incapacitive sensing.
CHI
Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith
2010 J jnl
Infinite factorization of multiple non-parametric views.
Mach. Learn.
Simon Rogers, Arto Klami, Janne Sinkkonen, Mark A. Girolami, Samuel Kaski
2010 J jnl
Semi-parametric analysis of multi-rater data.
Stat. Comput.
Simon Rogers, Mark A. Girolami, Tamara Polajnar
2009 — conf
Classification of Protein Interaction Sentences via Gaussian Processes.
PRIB
Tamara Polajnar, Simon Rogers, Mark A. Girolami
2009 J jnl
Probabilistic assignment of formulas to mass peaks in metabolomics experiments.
Bioinform.
Simon Rogers, Richard A. Scheltema, Mark A. Girolami, Rainer Breitling
2008 J jnl
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.
Bioinform.
Simon Rogers, Mark A. Girolami, Walter Kolch, Katrina M. Waters, Tao Liu, Brian Thrall, H. Steven Wiley
2007 J jnl
Bayesian model-based inference of transcription factor activity.
BMC Bioinform.
Simon Rogers, Raya Khanin, Mark A. Girolami
2007 — conf
Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process.
Gaussian Processes in Practice
Simon Rogers, Mark A. Girolami
2006 J jnl
Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors.
Neural Comput.
Mark A. Girolami, Simon Rogers
2005 J jnl
A Bayesian regression approach to the inference of regulatory networks from gene expression data.
Bioinform.
Simon Rogers, Mark A. Girolami
2005 — conf
Disease Classification from Capillary Electrophoresis: Mass Spectrometry.
ICAPR (1)
Simon Rogers, Mark A. Girolami, Ronald Krebs, Harald Mischak
2005 A* conf
Hierarchic Bayesian models for kernel learning.
ICML
Mark A. Girolami, Simon Rogers
2005 J jnl
The Latent Process Decomposition of cDNA Microarray Data Sets.
IEEE ACM Trans. Comput. Biol. Bioinform.
Simon Rogers, Mark A. Girolami, Colin Campbell, Rainer Breitling
2003 J jnl
Estimating Dataset Size Requirements for Classifying DNA Microarray Data.
J. Comput. Biol.
Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov