Simon M. Lin - RankMe

57 papers A* 3C 2Misc 11Journal 29Unranked 12

Year	Rank	Type	Title / Venue / Authors
2021	—	`conf`	COUGH: A Challenge Dataset and Models for COVID-19 FAQ Retrieval. EMNLP (1) Xinliang Frederick Zhang, Heming Sun, Xiang Yue, Simon M. Lin, Huan Sun
2021	—	`conf`	CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering. BIBM Xiang Yue, Xinliang Frederick Zhang, Ziyu Yao, Simon M. Lin, Huan Sun
2021	J	`jnl`	Multi-View Deep Learning Framework for Predicting Patient Expenditure in Healthcare. IEEE Open J. Comput. Soc. Xianlong Zeng, Simon M. Lin, Chang Liu
2021	J	`jnl`	Pre-training transformer-based framework on large-scale pediatric claims data for downstream population-specific tasks. CoRR Xianlong Zeng, Simon M. Lin, Chang Liu
2021	—	`conf`	Transformer-based unsupervised patient representation learning based on medical claims for risk stratification and analysis. BCB Xianlong Zeng, Simon M. Lin, Chang Liu
2021	J	`jnl`	Transformer-based unsupervised patient representation learning based on medical claims for risk stratification and analysis. CoRR Xianlong Zeng, Simon M. Lin, Chang Liu
2020	J	`jnl`	COUGH: A Challenge Dataset and Models for COVID-19 FAQ Retrieval. CoRR Xinliang Frederick Zhang, Heming Sun, Xiang Yue, Emmett Jesrani, Simon M. Lin, Huan Sun
2020	J	`jnl`	CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering. CoRR Xiang Yue, Xinliang Frederick Zhang, Ziyu Yao, Simon M. Lin, Huan Sun
2020	—	`conf`	Clinical Phrase Mining with Language Models. BIBM Kaushik Mani, Xiang Yue, Bernal Jimenez Gutierrez, Yungui Huang, Simon M. Lin, Huan Sun
2020	J	`jnl`	Graph embedding on biomedical networks: methods, applications and evaluations. Bioinform. Xiang Yue, Zhen Wang, Jingong Huang, Srinivasan Parthasarathy, Soheil Moosavinasab, Yungui Huang, Simon M. Lin, Wen Zhang, Ping Zhang, Huan Sun
2020	Misc	`conf`	Multilevel Self-Attention Model and Its Use on Medical Risk Prediction. PSB Xianlong Zeng, Yunyi Feng, Soheil Moosavinasab, Deborah Lin, Simon M. Lin, Chang Liu
2020	A*	`conf`	Rationalizing Medical Relation Prediction from Corpus-level Statistics. ACL Zhen Wang, Jennifer Lee, Simon M. Lin, Huan Sun
2020	J	`jnl`	Rationalizing Medical Relation Prediction from Corpus-level Statistics. CoRR Zhen Wang, Jennifer Lee, Simon M. Lin, Huan Sun
2020	—	`conf`	Sequence-to-Set Semantic Tagging for Complex Query Reformulation and Automated Text Categorization in Biomedical IR using Self-Attention. BioNLP Manirupa Das, Juanxi Li, Eric Fosler-Lussier, Simon M. Lin, Steve Rust, Yungui Huang, Rajiv Ramnath
2020	Misc	`conf`	Tasks Associated With Extreme After-hours EHR Use Among Ambulatory Care Pediatricians. AMIA Selasi Attipoe, Yungui Huang, Sharon B. Schweikhart, Jennifer L. Hefner, Daniel M. Walker, Steven W. Rust, Jeffrey Hoffman, Simon M. Lin
2019	—	`conf`	Device-free Sleep Stage Recognition through Bed Frame Vibration Sensing. DFHS@BuildSys Zhizhang Hu, Emre Sezgin, Simon M. Lin, Pei Zhang, Hae Young Noh, Shijia Pan
2019	J	`jnl`	Distributed representation of patients and its use for medical cost prediction. CoRR Xianlong Zeng, Soheil Moosavinasab, En-Ju D. Lin, Simon M. Lin, Razvan C. Bunescu, Chang Liu
2019	J	`jnl`	Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations. CoRR Xiang Yue, Zhen Wang, Jingong Huang, Srinivasan Parthasarathy, Soheil Moosavinasab, Yungui Huang, Simon M. Lin, Wen Zhang, Ping Zhang, Huan Sun
2019	C	`conf`	Identifying Candidates for Medical Coding Audits: Demonstration of a Data Driven Approach to Improve Medicare Severity Diagnosis-Related Group Coding Compliance. HIS Yunyi Feng, Simon M. Lin, Enju Lin, Lesley Farley, Yungui Huang, Chang Liu
2019	J	`jnl`	Sequence-to-Set Semantic Tagging: End-to-End Multi-label Prediction using Neural Attention for Complex Query Reformulation and Automated Text Categorization. CoRR Manirupa Das, Juanxi Li, Eric Fosler-Lussier, Simon M. Lin, Soheil Moosavinasab, Steve Rust, Yungui Huang, Rajiv Ramnath
2019	A*	`conf`	SurfCon: Synonym Discovery on Privacy-Aware Clinical Data. KDD Zhen Wang, Xiang Yue, Soheil Moosavinasab, Yungui Huang, Simon M. Lin, Huan Sun
2019	J	`jnl`	SurfCon: Synonym Discovery on Privacy-Aware Clinical Data. CoRR Zhen Wang, Xiang Yue, Soheil Moosavinasab, Yungui Huang, Simon M. Lin, Huan Sun
2019	J	`jnl`	Transcending Dimensions: a Comparative Analysis of Cloaca Imaging in Advancing the Surgeon's Understanding of Complex Anatomy. J. Digit. Imaging Alessandra C. Gasior, Carlos Reck, Victoria Lane, Richard J. Wood, Jeremy A. Patterson, Robert Strouse, Simon M. Lin, Jennifer N. Cooper, D. Gregory Bates, Marc A. Levitt
2018	Misc	`conf`	A roadmap of transition to health independence: A patient-centered study of self-management and digital-health solutions among teens with chronic conditions. AMIA Emre Sezgin, Monica Weiler, Anthony Weiler, Simon M. Lin
2018	Misc	`conf`	Char2Vec: Learning the Semantic Embedding of Rare and Unseen Words in the Biomedical Literature. AMIA Syed-Amad A. Hussain, Soheil Moosavinasab, Emre Sezgin, Yungui Huang, Simon M. Lin
2018	Misc	`conf`	DeepChild: Hospitalization Prediction via Neural Network. AMIA Xianlong Zeng, Soheil Moosavinasab, Enju Lin, Yungui Huang, Chang Liu, Simon M. Lin
2018	—	`conf`	Phrase2VecGLM: Neural generalized language model-based semantic tagging for complex query reformulation in medical IR. BioNLP Manirupa Das, Eric Fosler-Lussier, Simon M. Lin, Soheil Moosavinasab, David Chen, Steve Rust, Yungui Huang, Rajiv Ramnath
2018	—	`conf`	Prediction of Clinical Outcomes of Spinal Muscular Atrophy Using Motion Tracking Data and Elastic Net Regression. BCB David Chen, Steve Rust, En-Ju D. Lin, Simon M. Lin, Leslie Nelson, Lindsay Alfano, Linda P. Lowes
2018	Misc	`conf`	Variation in After-hours EHR Usage among Ambulatory Care Physicians. AMIA Selasi Attipoe, Yungui Huang, Sharon B. Schweikhart, Simon M. Lin
2017	J	`jnl`	Clinical exome sequencing reports: current informatics practice and future opportunities. J. Am. Medical Informatics Assoc. Rajeswari Swaminathan, Yungui Huang, Caroline Astbury, Sara Fitzgerald-Butt, Katherine Miller, Justin Cole, Christopher W. Bartlett, Simon M. Lin
2017	Misc	`conf`	DeepSuggest: Query Expansion for Clinical Notes by Deep Learning. AMIA Emre Sezgin, Koushik Jinna, Tran Bourgeois, Soheil Moosavinasab, Yungui Huang, Simon M. Lin
2017	Misc	`conf`	Genome Dashboard: An Interactive Tool for the Exploration of Human Genomic Variants and Phenotypic Associations. AMIA Katherine Miller, Rajeswari Swaminathan, Soheil Moosavinasab, Robert Strouse, Matthew Bailey, Yungui Huang, Simon M. Lin
2017	Misc	`conf`	Sharing exome sequencing data between Clinical Sequencing Labs and Healthcare Providers. AMIA Rajeswari Swaminathan, Yungui Huang, Katherine Miller, Matthew Pastore, Sayaka Hashimoto, Theodora Jacobson, Danielle Mouhlas, Simon M. Lin
2017	J	`jnl`	Simplified Readability Metric Drives Improvement of Radiology Reports: an Experiment on Ultrasound Reports at a Pediatric Hospital. J. Digit. Imaging Wei Chen, Claire Durkin, Yungui Huang, Brent Adler, Steve Rust, Simon M. Lin
2017	Misc	`conf`	Vitals Risk Index: A Simplified Pediatric Early Warning Index that Relies Solely on Objective Measures. AMIA Tyler Gorham, Steven W. Rust, Jing Yang, James Lin, Richard Hoyt, Swan Bee Liu, Jeffrey Hoffman, Tensing Maa, Yungui Huang, Simon M. Lin
2016	J	`jnl`	'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities. Database J. Biol. Databases Curation Soheil Moosavinasab, Jeremy A. Patterson, Robert Strouse, Majid Rastegar-Mojarad, Kelly Regan, Philip R. O. Payne, Yungui Huang, Simon M. Lin
2016	—	`conf`	Evaluation of a Machine Learning Method to Rank PubMed Central Articles For Clinical Relevancy: NCH at TREC 2016 Clinical Decision Support Track. TREC Wei Chen, Soheil Moosavinasab, Steve Rust, Yungui Huang, Simon M. Lin, Anna Zemke, Ariana Prinzbach
2016	J	`jnl`	WHATIF: An open-source desktop application for extraction and management of the incidental findings from next-generation sequencing variant data. Comput. Biol. Medicine Zhan Ye, Christopher Kadolph, Robert Strenn, Daniel Wall, Elizabeth McPherson, Simon M. Lin
2015	J	`jnl`	Application of clinical text data for phenome-wide association studies (PheWASs). Bioinform. Scott J. Hebbring, Majid Rastegar-Mojarad, Zhan Ye, John Mayer, Crystal Jacobson, Simon M. Lin
2015	J	`jnl`	Investigating properties of a family of quantum Rényi divergences. Quantum Inf. Process. Simon M. Lin, Marco Tomamichel
2014	—	`conf`	Mining massive SNP data for identifying associated SNPs and uncovering gene relationships. BCB Amy Webb, Aaron Albin, Zhan Ye, Majid Rastegar-Mojarad, Kun Huang, Jeffrey D. Parvin, Wolfgang Sadee, Lang Li, Simon M. Lin, Yang Xiang
2014	A*	`conf`	Privacy in Pharmacogenetics: An End-to-End Case Study of Personalized Warfarin Dosing. USENIX Security Symposium Matthew Fredrikson, Eric Lantz, Somesh Jha, Simon M. Lin, David Page, Thomas Ristenpart
2013	—	`conf`	An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. MedInfo Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce
2013	J	`jnl`	The disease and gene annotations (DGA): an annotation resource for human disease. Nucleic Acids Res. Kai Peng, Wei Xu, Jianyong Zheng, Kegui Huang, Huisong Wang, Jiansong Tong, Zhifeng Lin, Jun Liu, Wenqing Cheng, Dong Fu, Pan Du, Warren A. Kibbe, Simon M. Lin, Tian Xia
2010	J	`jnl`	ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data. BMC Bioinform. Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon M. Lin, David S. Lapointe, Michael R. Green
2010	J	`jnl`	Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinform. Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A. Kibbe, Lifang Hou, Simon M. Lin
2009	J	`jnl`	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. Bioinform. Pan Du, Gang Feng, Jared Flatow, Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin
2008	J	`jnl`	2009 and beyond: the decade of personalised medicine. Int. J. Comput. Biol. Drug Des. Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang
2008	J	`jnl`	A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays. Int. J. Comput. Biol. Drug Des. Chia-Ju Lee, Dong Fu, Pan Du, Hongmei Jiang, Simon M. Lin, Warren A. Kibbe
2007	C	`conf`	Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing. BIBE Pan Du, Simon M. Lin, Warren A. Kibbe, Haihui Wang
2006	J	`jnl`	Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinform. Pan Du, Warren A. Kibbe, Simon M. Lin
2004	J	`jnl`	MedlineR: an open source library in R for Medline literature data mining. Bioinform. Simon M. Lin, Patrick McConnell, Kimberly F. Johnson, Jennifer Shoemaker
2002	J	`jnl`	Applications of Tree-Maps to hierarchical biological data. Bioinform. Patrick McConnell, Kimberly F. Johnson, Simon M. Lin
2002	Misc	`conf`	ICA and PLS modeling for functional analysis and drug sensitivity for DNA microarray signals. ICASSP Xuejun Liao, Nilanjan Dasgupta, Simon M. Lin, Lawrence Carin
2002	J	`jnl`	Sequential modeling for identifying CpG island locations in human genome. IEEE Signal Process. Lett. Nilanjan Dasgupta, Simon M. Lin, Lawrence Carin
2001	J	`jnl`	Critical Assessment of Microarray Data Analysis: the 2001 challenge. Bioinform. Kimberly F. Johnson, Simon M. Lin
2001	—	`conf`	Extracting knowledge from gene expression data: A case study of Batten Disease. BIOKDD Simon M. Lin, Sumeer Dhar, Rose-Mary N. Boustany