Simon K. Warfield

295 papers A* 1A 23B 3Misc 4Journal 121Unranked 141

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Detailed Delineation of the Fetal Brain in Diffusion MRI via Multi-Task Learning. IEEE Trans. Medical Imaging Davood Karimi, Camilo Calixto, Haykel Snoussi, Bo Li, Maria Camila Cortes-Albornoz, Clemente Velasco-Annis, Caitlin K. Rollins, Lana Pierotich, Camilo Jaimes, Ali Gholipour, Simon K. Warfield
2025	J	`jnl`	A self-attention model for robust rigid slice-to-volume registration of functional MRI. Comput. Medical Imaging Graph. Samah Khawaled, Onur Afacan, Simon K. Warfield, Moti Freiman
2025	J	`jnl`	FetDTIAlign: A Deep Learning Framework for Affine and Deformable Registration of Fetal Brain dMRI. CoRR Bo Li, Qi Zeng, Simon K. Warfield, Davood Karimi
2025	J	`jnl`	FetDTIAlign: A deep learning framework for affine and deformable registration of fetal brain dMRI. NeuroImage Bo Li, Qi Zeng, Simon K. Warfield, Davood Karimi
2025	J	`jnl`	IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. Medical Image Anal. Noga Kertes, Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman
2025	J	`jnl`	MRI Super-Resolution with Deep Learning: A Comprehensive Survey. CoRR Mohammad Khateri, Serge Vasylechko, Morteza Ghahremani, Liam Timms, Deniz Kocanaogullari, Simon K. Warfield, Camilo Jaimes, Davood Karimi, Alejandra Sierra, Jussi Tohka, Sila Kurugol, Onur Afacan
2025	—	`conf`	Measuring T1 Relaxation Times at High Resolution from Rapid Brain MRI. ISBI Zhengyong Huang, Hakim Ouaalam, Onur Afacan, Simon K. Warfield, Yao Sui
2024	J	`jnl`	A self-attention model for robust rigid slice-to-volume registration of functional MRI. CoRR Samah Khawaled, Simon K. Warfield, Moti Freiman
2024	J	`jnl`	Anatomically Constrained Tractography of the Fetal Brain. CoRR Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi
2024	J	`jnl`	Anatomically constrained tractography of the fetal brain. NeuroImage Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi
2024	J	`jnl`	Detailed delineation of the fetal brain in diffusion MRI via multi-task learning. CoRR Davood Karimi, Camilo Calixto, Haykel Snoussi, Maria Camila Cortes-Albornoz, Clemente Velasco-Annis, Caitlin K. Rollins, Camilo Jaimes, Ali Gholipour, Simon K. Warfield
2024	J	`jnl`	IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. CoRR Noga Kertes, Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman
2024	J	`jnl`	Improved myelin water fraction mapping with deep neural networks using synthetically generated 3D data. Medical Image Anal. Serge Vasylechko Didenko, Simon K. Warfield, Sila Kurugol, Onur Afacan
2024	J	`jnl`	Streamline tractography of the fetal brain in utero with machine learning. CoRR Weide Liu, Camilo Calixto, Simon K. Warfield, Davood Karimi
2023	J	`jnl`	3D Brainformer: 3D Fusion Transformer for Brain Tumor Segmentation. CoRR Rui Nian, Guoyao Zhang, Yao Sui, Yuqi Qian, Qiuying Li, Mingzhang Zhao, Jianhui Li, Ali Gholipour, Simon K. Warfield
2023	J	`jnl`	SlicerCBM: automatic framework for biomechanical analysis of the brain. Int. J. Comput. Assist. Radiol. Surg. Saima Safdar, Benjamin F. Zwick, Yue Yu, George C. Bourantas, Grand R. Joldes, Simon K. Warfield, Damon E. Hyde, Sarah F. Frisken, Tina Kapur, Ron Kikinis, Alexandra J. Golby, Arya Nabavi, Adam Wittek, Karol Miller
2022	J	`jnl`	Automated modeling of brain bioelectric activity within the 3D Slicer environment. CoRR Saima Safdar, Benjamin Zwick, George C. Bourantas, Grand R. Joldes, Damon Hyde, Simon K. Warfield, Adam Wittek, Karol Miller
2022	J	`jnl`	CORPS: Cost-free Rigorous Pseudo-labeling based on Similarity-ranking for Brain MRI Segmentation. CoRR Can Taylan Sari, Sila Kurugol, Onur Afacan, Simon K. Warfield
2022	J	`jnl`	Patient-specific solution of the electrocorticography forward problem in deforming brain. NeuroImage Benjamin F. Zwick, George C. Bourantas, Saima Safdar, Grand R. Joldes, Damon E. Hyde, Simon K. Warfield, Adam Wittek, Karol Miller
2022	J	`jnl`	Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. IEEE Trans. Medical Imaging Arvind Balachandrasekaran, Alexander Li Cohen, Onur Afacan, Simon K. Warfield, Ali Gholipour
2022	—	`conf`	SUPER-IVIM-DC: Intra-voxel Incoherent Motion Based Fetal Lung Maturity Assessment from Limited DWI Data Using Supervised Learning Coupled with Data-Consistency. MICCAI (2) Noam Korngut, Elad Rotman, Onur Afacan, Sila Kurugol, Yael Zaffrani-Reznikov, Shira Nemirovsky-Rotman, Simon K. Warfield, Moti Freiman
2022	J	`jnl`	SUPER-IVIM-DC: Intra-voxel incoherent motion based Fetal lung maturity assessment from limited DWI data using supervised learning coupled with data-consistency. CoRR Noam Korngut, Elad Rotman, Onur Afacan, Sila Kurugol, Yael Zaffrani-Reznikov, Shira Nemirovsky-Rotman, Simon K. Warfield, Moti Freiman
2022	J	`jnl`	Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction. IEEE Trans. Medical Imaging Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield
2022	—	`conf`	SynthMap: a generative model for synthesis of 3D datasets for quantitative MRI parameter mapping of myelin water fraction. MIDL Serge Vasylechko Didenko, Simon K. Warfield, Sila Kurugol, Onur Afacan
2022	—	`conf`	qDWI-Morph: Motion-Compensated Quantitative Diffusion-Weighted MRI Analysis for Fetal Lung Maturity Assessment. ECCV Workshops (3) Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman
2022	J	`jnl`	qDWI-Morph: Motion-compensated quantitative Diffusion-Weighted MRI analysis for fetal lung maturity assessment. CoRR Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman
2021	J	`jnl`	A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Medical Image Anal. Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour
2021	J	`jnl`	Calibrated Diffusion Tensor Estimation. CoRR Davood Karimi, Simon K. Warfield, Ali Gholipour
2021	J	`jnl`	Deep learning-based parameter estimation in fetal diffusion-weighted MRI. NeuroImage Davood Karimi, Camilo Jaimes, Fedel Machado-Rivas, Lana Vasung, Shadab Khan, Simon K. Warfield, Ali Gholipour
2021	J	`jnl`	Gradient-Guided Isotropic MRI Reconstruction From Anisotropic Acquisitions. IEEE Trans. Computational Imaging Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield
2021	J	`jnl`	Learning to estimate  the fiber orientation distribution function from diffusion-weighted MRI. NeuroImage Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Simon K. Warfield, Ali Gholipour
2021	—	`conf`	MRI Super-Resolution Through Generative Degradation Learning. MICCAI (6) Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
2021	J	`jnl`	Magic DIAMOND: Multi-fascicle diffusion compartment imaging with tensor distribution modeling and tensor-valued diffusion encoding. Medical Image Anal. Alexis Reymbaut, Alex Valcourt Caron, Guillaume Gilbert, Filip Szczepankiewicz, Markus Nilsson, Simon K. Warfield, Maxime Descoteaux, Benoit Scherrer
2021	J	`jnl`	Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. Medical Image Anal. Jaume Coll-Font, Onur Afacan, Jeanne Chow, Richard S. Lee, Simon K. Warfield, Sila Kurugol
2021	J	`jnl`	Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif. Intell. Medicine Davood Karimi, Simon K. Warfield, Ali Gholipour
2020	J	`jnl`	A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. CoRR Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour
2020	J	`jnl`	Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks. CoRR Davood Karimi, Simon K. Warfield, Ali Gholipour
2020	J	`jnl`	Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. NeuroImage Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart, Stefano B. Blumberg, Can Son Khoo, Marco Palombo, Iasonas Kokkinos, Daniel C. Alexander, Jaume Coll-Font, Benoit Scherrer, Simon K. Warfield, Suheyla Cetin Karayumak, Yogesh Rathi, Simon Koppers, Leon Weninger, Chantal M. W. Tax
2020	J	`jnl`	Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Medical Image Anal. Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour
2020	—	`conf`	Dynamic Missing-Data Completion Reduces Leakage of Motion Artifact Caused by Temporal Filtering that Remains After Scrubbing. ISBI Seyhmus Guler, Burak Erem, Alexander Li Cohen, Onur Afacan, Simon K. Warfield
2020	—	`conf`	Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. MICCAI (2) Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
2020	—	`conf`	Learning to Detect Brain Lesions from Noisy Annotations. ISBI Davood Karimi, Jurriaan M. Peters, Abdelhakim Ouaalam, Sanjay P. Prabhu, Mustafa Sahin, Darcy A. Krueger, Alexander Kolevzon, Charis Eng, Simon K. Warfield, Ali Gholipour
2020	J	`jnl`	SLIMM: Slice localization integrated MRI monitoring. NeuroImage Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
2019	J	`jnl`	A registration method for improving quantitative assessment in probabilistic diffusion tractography. NeuroImage Jeff L. Waugh, John K. Kuster, Miriam L. Makhlouf, Jacob M. Levenstein, Trisha J. Multhaupt-Buell, Simon K. Warfield, Nutan Sharma, Anne J. Blood
2019	J	`jnl`	Asymmetric Loss Functions and Deep Densely-Connected Networks for Highly-Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection. IEEE Access Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
2019	J	`jnl`	Biomechanical modeling and computer simulation of the brain during neurosurgery. CoRR Karol Miller, Grand Roman Joldes, George C. Bourantas, Simon K. Warfield, Damon E. Hyde, Ron Kikinis, Adam Wittek
2019	J	`jnl`	Changes in neonatal regional brain volume associated with preterm birth and perinatal factors. NeuroImage Bonnie Alexander, Claire E. Kelly, Christopher L. Adamson, Richard Beare, Diana Zannino, Jian Chen, Andrea L. Murray, Wai Yen Loh, Lillian G. Matthews, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Marc L. Seal, Alicia J. Spittle, Jeanie L. Y. Cheong, Deanne K. Thompson
2019	A	`conf`	Consensus equilibrium framework for super-resolution and extreme-scale CT reconstruction. SC Xiao Wang, Venkatesh Sridhar, Zahra Ronaghi, Rollin C. Thomas, Jack Deslippe, Dilworth Parkinson, Gregery T. Buzzard, Samuel P. Midkiff, Charles A. Bouman, Simon K. Warfield
2019	—	`conf`	Deep Plug-and-Play Prior for Parallel MRI Reconstruction. ICCV Workshops Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield
2019	J	`jnl`	Deep Plug-and-Play Prior for Parallel MRI Reconstruction. CoRR Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield
2019	J	`jnl`	Deep learning with noisy labels: exploring techniques and remedies in medical image analysis. CoRR Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour
2019	—	`conf`	Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets: Application to IsoIntense Infant Brain MRI Segmentation. MIDL Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
2019	J	`jnl`	Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from NeuroImage Shadab Khan, Lana Vasung, Bahram Marami, Caitlin K. Rollins, Onur Afacan, Cynthia M. Ortinau, Edward Yang, Simon K. Warfield, Ali Gholipour
2019	J	`jnl`	Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans. Medical Imaging Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Xavier Tomas-Fernandez, Sila Kurugol, Simon K. Warfield
2019	—	`conf`	Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. MICCAI (3) Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
2019	J	`jnl`	Multi-Resolution Graph Based Volumetric Cortical Basis Functions From Local Anatomic Features. IEEE Trans. Biomed. Eng. Damon E. Hyde, Jurriaan M. Peters, Simon K. Warfield
2019	B	`conf`	Non-learning based deep parallel MRI reconstruction (NLDpMRI). Image Processing Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield
2019	J	`jnl`	ODE-based Deep Network for MRI Reconstruction. CoRR Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield
2019	J	`jnl`	Suite of Meshless Algorithms for Accurate Computation of Soft Tissue Deformation for Surgical Simulation. CoRR Grand Roman Joldes, George C. Bourantas, Benjamin Zwick, Habibullah Amin Chowdhury, Adam Wittek, Sudip Agrawal, Konstantinos A. Mountris, Damon Hyde, Simon K. Warfield, Karol Miller
2019	J	`jnl`	Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation. Medical Image Anal. Grand Roman Joldes, George C. Bourantas, Benjamin Zwick, Habibullah Amin Chowdhury, Adam Wittek, Sudip Agrawal, Konstantinos A. Mountris, Damon Hyde, Simon K. Warfield, Karol Miller
2019	J	`jnl`	Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations. NeuroImage Gaëtan Rensonnet, Benoît Scherrer, Gabriel Girard, Aleksandar Jankovski, Simon K. Warfield, Benoît Macq, Jean-Philippe Thiran, Maxime Taquet
2018	—	`conf`	A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI. MICCAI (3) Aymeric Stamm, Olivier Commowick, Alessandra Menafoglio, Simon K. Warfield
2018	—	`conf`	A Comparison of Point and Complete Electrode Models in a Finite Difference Model of Invasive Electrode Measurements. EMBC Damon E. Hyde, Xavier Tomas-Fernandez, Scellig S. Stone, Jurriaan M. Peters, Simon K. Warfield
2018	—	`conf`	Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation. DLMIA/ML-CDS@MICCAI Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Sila Kurugol, Simon K. Warfield
2018	—	`conf`	Automatic renal segmentation in DCE-MRI using convolutional neural networks. ISBI Marzieh Haghighi, Simon K. Warfield, Sila Kurugol
2018	J	`jnl`	Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets for IsoIntense Infant Brain MRI Segmentation. CoRR Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
2018	—	`conf`	Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI. MICCAI (3) Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K. Warfield, Christian Barillot
2018	A*	`conf`	Missing Slice Recovery for Tensors Using a Low-Rank Model in Embedded Space. CVPR Tatsuya Yokota, Burak Erem, Seyhmus Guler, Simon K. Warfield, Hidekata Hontani
2018	J	`jnl`	Missing Slice Recovery for Tensors Using a Low-rank Model in Embedded Space. CoRR Tatsuya Yokota, Burak Erem, Seyhmus Guler, Simon K. Warfield, Hidekata Hontani
2018	—	`conf`	Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution. ISBI Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K. Warfield, Christian Barillot
2018	J	`jnl`	Non-Learning based Deep Parallel MRI Reconstruction (NLDpMRI). CoRR Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield
2018	—	`conf`	Real-time automatic fetal brain extraction in fetal MRI by deep learning. ISBI Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour
2018	—	`conf`	Semi-automated Extraction of Crohns Disease MR Imaging Markers Using a 3D Residual CNN with Distance Prior. DLMIA/ML-CDS@MICCAI Yechiel Lamash, Sila Kurugol, Simon K. Warfield
2018	—	`conf`	Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. MICCAI (3) Shadab Khan, Caitlin K. Rollins, Cynthia M. Ortinau, Onur Afacan, Simon K. Warfield, Ali Gholipour
2018	J	`jnl`	Tversky as a Loss Function for Highly Unbalanced Image Segmentation using 3D Fully Convolutional Deep Networks. CoRR Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
2017	J	`jnl`	A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans. IEEE Trans. Medical Imaging Yuanyuan Jia, Ali Gholipour, Zhongshi He, Simon K. Warfield
2017	J	`jnl`	A new neonatal cortical and subcortical brain atlas: the Melbourne Children's Regional Infant Brain (M-CRIB) atlas. NeuroImage Bonnie Alexander, Andrea L. Murray, Wai Yen Loh, Lillian G. Matthews, Christopher L. Adamson, Richard Beare, Jian Chen, Claire E. Kelly, Sandra Rees, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Alicia J. Spittle, Jeanie L. Y. Cheong, Marc L. Seal, Deanne K. Thompson
2017	J	`jnl`	Automated template-based brain localization and extraction for fetal brain MRI reconstruction. NeuroImage Sébastien Tourbier, Clemente Velasco-Annis, Vahid Taimouri, Patric Hagmann, Reto Meuli, Simon K. Warfield, Meritxell Bach Cuadra, Ali Gholipour
2017	J	`jnl`	Automatic Renal Segmentation in DCE-MRI using Convolutional Neural Networks. CoRR Marzieh Haghighi, Simon K. Warfield, Sila Kurugol
2017	J	`jnl`	Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans. Medical Imaging Renaud Hédouin, Olivier Commowick, Elise Bannier, Benoit Scherrer, Maxime Taquet, Simon K. Warfield, Christian Barillot
2017	—	`conf`	Decoupling Axial and Radial Tissue Heterogeneity in Diffusion Compartment Imaging. IPMI Benoit Scherrer, Maxime Taquet, Armin Schwartzman, Etienne St-Onge, Gaëtan Rensonnet, Sanjay P. Prabhu, Simon K. Warfield
2017	J	`jnl`	Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging. IEEE Trans. Medical Imaging Burak Erem, Damon E. Hyde, Jurriaan M. Peters, Frank H. Duffy, Simon K. Warfield
2017	J	`jnl`	Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. NeuroImage Zach Eaton-Rosen, Benoît Scherrer, Andrew Melbourne, Sébastien Ourselin, Jeffrey J. Neil, Simon K. Warfield
2017	—	`conf`	Localization of stereo-electroencephalography signals using a finite difference complete electrode model. EMBC Damon E. Hyde, Xavier Tomas-Fernandez, Scellig S. Stone, Jurriaan M. Peters, Simon K. Warfield
2017	—	`conf`	Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. CMMI/RAMBO/SWITCH@MICCAI Sila Kurugol, Bahram Marami, Onur Afacan, Simon K. Warfield, Ali Gholipour
2017	J	`jnl`	Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. Medical Image Anal. Sila Kurugol, Moti Freiman, Onur Afacan, Liran Domachevsky, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield
2017	J	`jnl`	Real-Time Automatic Fetal Brain Extraction in Fetal MRI by Deep Learning. CoRR Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour
2017	J	`jnl`	Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. NeuroImage Bahram Marami, Seyed Sadegh Mohseni Salehi, Onur Afacan, Benoit Scherrer, Caitlin K. Rollins, Edward Yang, Judy A. Estroff, Simon K. Warfield, Ali Gholipour
2016	—	`conf`	Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure. MICCAI (3) Aymeric Stamm, Olivier Commowick, Simon K. Warfield, Simone Vantini
2016	—	`conf`	Evaluation of numerical techniques for solving the current injection problem in biological tissues. ISBI Damon E. Hyde, Moritz Dannhauer, Simon K. Warfield, Rob S. MacLeod, Dana H. Brooks
2016	J	`jnl`	Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans. Medical Imaging Bahram Marami, Benoit Scherrer, Onur Afacan, Burak Erem, Simon K. Warfield, Ali Gholipour
2016	—	`conf`	Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects. MICCAI (3) Bahram Marami, Benoit Scherrer, Onur Afacan, Simon K. Warfield, Ali Gholipour
2016	J	`jnl`	Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices. IEEE J. Biomed. Health Informatics Yuanyuan Jia, Zhongshi He, Ali Gholipour, Simon K. Warfield
2016	J	`jnl`	Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. Medical Image Anal. Sila Kurugol, Moti Freiman, Onur Afacan, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield
2015	—	`ch.`	A Framework for the Analysis of Diffusion Compartment Imaging (DCI). Visualization and Processing of Higher Order Descriptors for Multi-Valued Data Maxime Taquet, Benoit Scherrer, Simon K. Warfield
2015	J	`jnl`	A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation. IEEE Trans. Medical Imaging Xavier Tomas-Fernandez, Simon K. Warfield
2015	—	`conf`	A template-to-slice block matching approach for automatic localization of brain in fetal MRI. ISBI Vahid Taimouri, Ali Gholipour, Clemente Velasco-Annis, Judy A. Estroff, Simon K. Warfield
2015	—	`conf`	Accelerated High Spatial Resolution Diffusion-Weighted Imaging. IPMI Benoit Scherrer, Onur Afacan, Maxime Taquet, Sanjay P. Prabhu, Ali Gholipour, Simon K. Warfield
2015	—	`conf`	Analytic Quantification of Bias and Variance of Coil Sensitivity Profile Estimators for Improved Image Reconstruction in MRI. MICCAI (2) Aymeric Stamm, Jolene Singh, Onur Afacan, Simon K. Warfield
2015	—	`conf`	Combined delay and graph embedding of epileptic discharges in EEG reveals complex and recurrent nonlinear dynamics. ISBI Burak Erem, Damon Hyde, Jurriaan M. Peters, Frank H. Duffy, Dana H. Brooks, Simon K. Warfield
2015	J	`jnl`	Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Medical Image Anal. Maxime Taquet, Benoit Scherrer, Nicolas Boumal, Jurriaan M. Peters, Benoît Macq, Simon K. Warfield
2015	—	`conf`	Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). MICCAI (3) Sila Kurugol, Moti Freiman, Onur Afacan, Liran Domachevsky, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield
2015	B	`conf`	Multi-session complex averaging for high resolution high SNR 3T MR visualization of ex vivo hippocampus and insula. Image Processing Aymeric Stamm, Jolene Singh, Benoît Scherrer, Onur Afacan, Simon K. Warfield
2015	J	`jnl`	Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information. IEEE J. Biomed. Health Informatics Subrahmanyam Gorthi, Alireza Akhondi Asl, Simon K. Warfield
2015	—	`conf`	Structural and diffusion weighted MRI registration for biomarker fusion in Crohn's disease diagnosis. ISBI Vahid Taimouri, Sila Kurugol, Sean Clancy, Moti Freiman, Simon K. Warfield
2015	—	`conf`	Symmetric block-matching registration for the distortion correction of Echo-Planar images. ISBI Renaud Hédouin, Olivier Commowick, Maxime Taquet, Elise Bannier, Benoit Scherrer, Simon K. Warfield, Christian Barillot
2014	—	`conf`	A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure. MICCAI (1) Maxime Taquet, Benoît Scherrer, Jurriaan M. Peters, Sanjay P. Prabhu, Simon K. Warfield
2014	J	`jnl`	A Logarithmic Opinion Pool Based STAPLE Algorithm for the Fusion of Segmentations With Associated Reliability Weights. IEEE Trans. Medical Imaging Alireza Akhondi Asl, Lennox Hoyte, Mark E. Lockhart, Simon K. Warfield
2014	J	`jnl`	A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure. IEEE Trans. Medical Imaging Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan M. Peters, Mustafa Sahin, Benoît Macq, Simon K. Warfield
2014	J	`jnl`	A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Medical Image Anal. Avan Suinesiaputra, Brett R. Cowan, Ahmed O. Al-Agamy, Mustafa A. Elattar, Nicholas Ayache, Ahmed S. Fahmy, Ayman M. Khalifa, Pau Medrano-Gracia, Marie-Pierre Jolly, Alan H. Kadish, Daniel C. Lee, Ján Margeta, Simon K. Warfield, Alistair A. Young
2014	—	`conf`	Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models. MICCAI (2) Ali Gholipour, Catherine Limperopoulos, Sean Clancy, Cédric Clouchoux, Alireza Akhondi Asl, Judy A. Estroff, Simon K. Warfield
2014	J	`jnl`	Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy. Int. J. Comput. Assist. Radiol. Surg. Vahid Taimouri, Alireza Akhondi Asl, Xavier Tomas-Fernandez, Jurriaan M. Peters, Sanjay P. Prabhu, Annapurna Poduri, Masanori Takeoka, Tobias Loddenkemper, Ann Marie R. Bergin, Chellamani Harini, Joseph R. Madsen, Simon K. Warfield
2014	—	`conf`	Four Neuroimaging Questions that P-Values Cannot Answer (and Bayesian Analysis Can). BAMBI Maxime Taquet, Jurriaan M. Peters, Simon K. Warfield
2014	J	`jnl`	Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic-ischemic encephalopathy treated with hypothermia. NeuroImage Pia Wintermark, Anne Hansen, Simon K. Warfield, Dmitry Dukhovny, Janet S. Soul
2014	—	`conf`	Optimal MAP Parameters Estimation in STAPLE - Learning from Performance Parameters versus Image Similarity Information. MLMI Subrahmanyam Gorthi, Alireza Akhondi Asl, Jean-Philippe Thiran, Simon K. Warfield
2014	—	`conf`	Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) in Diffusion Weighted MRI Signals of Crohn's Disease. ABDI@MICCAI Sila Kurugol, Moti Freiman, Onur Afacan, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield
2014	—	`conf`	T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph. MICCAI (3) Alireza Akhondi Asl, Onur Afacan, Robert V. Mulkern, Simon K. Warfield
2014	J	`jnl`	Voxel-Based Dipole Orientation Constraints for Distributed Current Estimation. IEEE Trans. Biomed. Eng. Damon Hyde, Frank H. Duffy, Simon K. Warfield
2013	—	`ed.`	Abdominal Imaging. Computation and Clinical Applications - 5th International Workshop, Held in Conjunction with MICCAI 2013, Nagoya, Japan, September 22, 2013. Proceedings Abdominal Imaging Hiroyuki Yoshida, Simon K. Warfield, Michael W. Vannier
2013	—	`conf`	Automatic delineation of white matter fascicles by localization based upon anatomical spatial relationships. ISBI Benoit Scherrer, Ralph O. Suarez, Simon K. Warfield
2013	—	`conf`	Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-Weighted Imaging (DIAMOND). MICCAI (3) Benoit Scherrer, Armin Schwartzman, Maxime Taquet, Sanjay P. Prabhu, Mustafa Sahin, Alireza Akhondi Asl, Simon K. Warfield
2013	J	`jnl`	Cortical Graph Smoothing: A Novel Method for Exploiting DWI-Derived Anatomical Brain Connectivity to Improve EEG Source Estimation. IEEE Trans. Medical Imaging David K. Hammond, Benoit Scherrer, Simon K. Warfield
2013	—	`conf`	Estimation of a Multi-fascicle Model from Single B-Value Data with a Population-Informed Prior. MICCAI (1) Maxime Taquet, Benoit Scherrer, Nicolas Boumal, Benoît Macq, Simon K. Warfield
2013	J	`jnl`	Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: Perinatal predictors and functional significance at age 7. NeuroImage Deanne K. Thompson, Christopher L. Adamson, Gehan Roberts, Nathan Faggian, Stephen J. Wood, Simon K. Warfield, Lex W. Doyle, Peter J. Anderson, Gary F. Egan, Terrie E. Inder
2013	—	`conf`	Improved Multi B-Value Diffusion-Weighted MRI of the Body by Simultaneous Model Estimation and Image Reconstruction (SMEIR). MICCAI (3) Moti Freiman, Onur Afacan, Robert V. Mulkern, Simon K. Warfield
2013	—	`conf`	Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error. IPMI Benoit Scherrer, Maxime Taquet, Simon K. Warfield
2013	J	`jnl`	Reliable estimation of incoherent motion parametric maps from diffusion-weighted MRI using fusion bootstrap moves. Medical Image Anal. Moti Freiman, Jeannette M. Perez-Rossello, Michael J. Callahan, Stephan D. Voss, Kirsten Ecklund, Robert V. Mulkern, Simon K. Warfield
2013	J	`jnl`	Simultaneous Truth and Performance Level Estimation Through Fusion of Probabilistic Segmentations. IEEE Trans. Medical Imaging Alireza Akhondi Asl, Simon K. Warfield
2013	—	`conf`	Spatially Constrained Incoherent Motion (SCIM) Model Improves Quantitative Diffusion-Weighted MRI Analysis of Crohn's Disease Patients. Abdominal Imaging Vahid Taimouri, Moti Freiman, Onur Afacan, Simon K. Warfield
2012	—	`conf`	A generalized correlation coefficient: Application to DTI and multi-fiber DTI. MMBIA Maxime Taquet, Benoît Macq, Simon K. Warfield
2012	J	`jnl`	Anisotropic partial volume CSF modeling for EEG source localization. NeuroImage Damon Hyde, Frank H. Duffy, Simon K. Warfield
2012	J	`jnl`	Automated delineation of white matter fiber tracts with a multiple region-of-interest approach. NeuroImage Ralph O. Suarez, Olivier Commowick, Sanjay P. Prabhu, Simon K. Warfield
2012	J	`jnl`	Corpus callosum alterations in very preterm infants: Perinatal correlates and 2 year neurodevelopmental outcomes. NeuroImage Deanne K. Thompson, Terrie E. Inder, Nathan Faggian, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Gary F. Egan
2012	J	`jnl`	Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE. IEEE Trans. Medical Imaging Olivier Commowick, Alireza Akhondi Asl, Simon K. Warfield
2012	—	`conf`	Estimation of the Prior Distribution of Ground Truth in the STAPLE Algorithm: An Empirical Bayesian Approach. MICCAI (1) Alireza Akhondi Asl, Simon K. Warfield
2012	—	`conf`	Interpolating multi-fiber models by Gaussian mixture simplification. ISBI Maxime Taquet, Benoit Scherrer, Christopher Benjamin, Sanjay P. Prabhu, Benoît Macq, Simon K. Warfield
2012	J	`jnl`	Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. NeuroImage Ali Gholipour, Alireza Akhondi Asl, Judy A. Estroff, Simon K. Warfield
2012	J	`jnl`	Optimizing Hippocampal Segmentation in Infants Utilizing MRI Post-Acquisition Processing. Neuroinformatics Deanne K. Thompson, Zohra M. Ahmadzai, Stephen J. Wood, Terrie E. Inder, Simon K. Warfield, Lex W. Doyle, Gary F. Egan
2012	—	`conf`	Polyaffine parametrization of image registration based on geodesic flows. MMBIA Michael S. Hansen, Signe S. Thorup, Simon K. Warfield
2012	—	`conf`	Population intensity outliers or a new model for brain WM abnormalities. ISBI Xavier Tomas-Fernandez, Simon K. Warfield
2012	—	`conf`	Registration and Analysis of White Matter Group Differences with a Multi-fiber Model. MICCAI (3) Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan M. Peters, Mustafa Sahin, Benoît Macq, Simon K. Warfield
2012	—	`conf`	Reliable Assessment of Perfusivity and Diffusivity from Diffusion Imaging of the Body. MICCAI (1) Moti Freiman, Stephan D. Voss, Robert V. Mulkern, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield
2012	—	`conf`	Retrospective local artefacts detection in diffusion-weighted images using the Random Sample Consensus (RANSAC) paradigm. ISBI Benoit Scherrer, Simon K. Warfield
2012	J	`jnl`	Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. Int. J. Biomed. Imaging Lara M. Vigneron, Ludovic Noels, Simon K. Warfield, Jacques G. Verly, Pierre Robe
2012	—	`conf`	Super-resolution reconstruction of diffusion-weighted images from distortion compensated orthogonal anisotropic acquisitions. MMBIA Benoit Scherrer, Ali Gholipour, Simon K. Warfield
2012	J	`jnl`	Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Medical Image Anal. Benoit Scherrer, Ali Gholipour, Simon K. Warfield
2012	—	`conf`	Whole brain group network analysis using network bias and variance parameters. ISBI Alireza Akhondi Asl, Arne Hans, Benoit Scherrer, Jurriaan M. Peters, Simon K. Warfield
2011	—	`conf`	A new classifier feature space for an improved Multiple Sclerosis lesion segmentation. ISBI Xavier Tomas-Fernandez, Simon K. Warfield
2011	—	`conf`	Abdominal Images Non-rigid Registration Using Local-Affine Diffeomorphic Demons. Abdominal Imaging Moti Freiman, Stephan D. Voss, Simon K. Warfield
2011	J	`jnl`	Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy. IEEE Trans. Medical Imaging Ayelet Akselrod-Ballin, Davi Bock, R. Clay Reid, Simon K. Warfield
2011	—	`conf`	Anisotropic equivalent conductivity tensors for bioelectric modeling of partial volume effects in cerebrospinal fluid spaces. ISBI Damon Hyde, Simon K. Warfield
2011	—	`conf`	Automated detection of white matter fiber bundles. ISBI Ralph O. Suarez, Olivier Commowick, Xavier Tomas-Fernandez, Sanjay P. Prabhu, Simon K. Warfield
2011	J	`jnl`	Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. NeuroImage Deanne K. Thompson, Terrie E. Inder, Nathan Faggian, Leigh A. Johnston, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Gary F. Egan
2011	—	`conf`	Cortical brain structures segmentation using constrained optimization and intensity coupling. ISBI Alireza Akhondi Asl, Simon K. Warfield
2011	—	`conf`	Demons registration with local affine adaptive regularization: application to registration of abdominal structures. ISBI Moti Freiman, Stephan D. Voss, Simon K. Warfield
2011	J	`jnl`	Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int. J. Comput. Assist. Radiol. Surg. Ali Gholipour, Judy A. Estroff, Carol E. Barnewolt, Susan A. Connolly, Simon K. Warfield
2011	—	`conf`	Learning Likelihoods for Labeling (L3): A General Multi-Classifier Segmentation Algorithm. MICCAI (3) Neil I. Weisenfeld, Simon K. Warfield
2011	—	`conf`	Left Ventricular Segmentation Challenge from Cardiac MRI: A Collation Study. STACOM Avan Suinesiaputra, Brett R. Cowan, J. Paul Finn, Carissa G. Fonseca, Alan H. Kadish, Daniel C. Lee, Pau Medrano-Gracia, Simon K. Warfield, Wenchao Tao, Alistair A. Young
2011	—	`conf`	Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. EMBC Ali Gholipour, Martin Polak, André J. W. van der Kouwe, Erez Nevo, Simon K. Warfield
2011	—	`conf`	On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. EMBC Ali Gholipour, Nasser Kehtarnavaz, Benoit Scherrer, Simon K. Warfield
2011	—	`conf`	Quantitative Body DW-MRI Biomarkers Uncertainty Estimation Using Unscented Wild-Bootstrap. MICCAI (2) Moti Freiman, Stephan D. Voss, Robert V. Mulkern, Jeannette M. Perez-Rossello, Simon K. Warfield
2011	—	`conf`	SoftSTAPLE: Truth and performance-level estimation from probabilistic segmentations. ISBI Neil I. Weisenfeld, Simon K. Warfield
2011	—	`conf`	Spatially Adaptive Log-Euclidean Polyaffine Registration Based on Sparse Matches. MICCAI (2) Maxime Taquet, Benoît Macq, Simon K. Warfield
2011	—	`conf`	Super-Resolution in Diffusion-Weighted Imaging. MICCAI (2) Benoit Scherrer, Ali Gholipour, Simon K. Warfield
2011	—	`conf`	Toward an accurate multi-fiber assessment strategy for clinical practice. ISBI Benoit Scherrer, Simon K. Warfield
2010	J	`jnl`	Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee. IEEE Trans. Medical Imaging Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin
2010	—	`conf`	Controllable spatio-temporal smoothness constraints for EEG source localization. ISBI Damon Hyde, Simon K. Warfield
2010	J	`jnl`	Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery. J. Comput. Appl. Math. Lara M. Vigneron, Romain Boman, Jean-Philippe Ponthot, Pierre Robe, Simon K. Warfield, Jacques G. Verly
2010	J	`jnl`	Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance From STAPLE. IEEE Trans. Medical Imaging Olivier Commowick, Simon K. Warfield
2010	—	`conf`	Incorporating Priors on Expert Performance Parameters for Segmentation Validation and Label Fusion: A Maximum a Posteriori STAPLE. MICCAI (3) Olivier Commowick, Simon K. Warfield
2010	—	`conf`	Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans. MICCAI (2) Ali Gholipour, Judy A. Estroff, Mustafa Sahin, Sanjay P. Prabhu, Simon K. Warfield
2010	—	`conf`	Measuring effects of latency in brain activity with FMRI. ISBI Firdaus Janoos, Raghu Machiraju, Steffen Sammet, Michael V. Knopp, Simon K. Warfield, István Ákos Mórocz
2010	J	`jnl`	Robust Super-Resolution Volume Reconstruction From Slice Acquisitions: Application to Fetal Brain MRI. IEEE Trans. Medical Imaging Ali Gholipour, Judy A. Estroff, Simon K. Warfield
2010	—	`conf`	Why multiple b-values are required for multi-tensor models: evaluation with a constrained log-Euclidean model. ISBI Benoit Scherrer, Simon K. Warfield
2009	J	`jnl`	A Continuous STAPLE for Scalar, Vector, and Tensor Images: An Application to DTI Analysis. IEEE Trans. Medical Imaging Olivier Commowick, Simon K. Warfield
2009	—	`conf`	A Data-Driven Approach to Discovering Common Brain Anatomy. ISBI Neil I. Weisenfeld, Simon K. Warfield
2009	—	`conf`	Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma. MICCAI (1) Ayelet Akselrod-Ballin, Davi Bock, R. Clay Reid, Simon K. Warfield
2009	J	`jnl`	Automatic segmentation of newborn brain MRI. NeuroImage Neil I. Weisenfeld, Simon K. Warfield
2009	J	`jnl`	EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. NeuroImage Michael Rullmann, Alfred Anwander, Moritz Dannhauer, Simon K. Warfield, Frank H. Duffy, Carsten H. Wolters
2009	—	`conf`	Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from Staple. IPMI Olivier Commowick, Simon K. Warfield
2009	—	`conf`	Improved Registration for Large Electron Microscopy Images. ISBI Ayelet Akselrod-Ballin, Davi Bock, R. Clay Reid, Simon K. Warfield
2009	—	`conf`	Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms. MICCAI (1) Grand Roman Joldes, Adam Wittek, Mathieu Couton, Simon K. Warfield, Karol Miller
2009	J	`jnl`	Reproducibility of Laplacian Wall Thickness Measurements of the Gallbladder with Varying CT Slice Thickness. J. Signal Process. Syst. Mithun N. Prasad, Matthew S. Brown, Chiayi Ni, Daniel Margolis, Michael Douek, Sundaresan Raman, David Lu, Jonathan G. Goldin, Simon K. Warfield
2009	J	`jnl`	Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Medical Image Anal. Michiel Schaap, Coert Metz, Theo van Walsum, Alina G. van der Giessen, Annick C. Weustink, Nico Mollet, Christian Bauer, Hrvoje Bogunovic, Carlos Castro-Gonzalez, Xiang Deng, Engin Dikici, Thomas O'Donnell, Michel Frenay, Ola Friman, Marcela Hernández Hoyos, Pieter H. Kitslaar, Karl Krissian, Caroline Kühnel, Miguel A. Luengo-Oroz, Maciej Orkisz, Örjan Smedby, Martin Styner, Andrzej Szymczak, Hüseyin Tek, Chunliang Wang, Simon K. Warfield, Sebastian Zambal, Yong Zhang, Gabriel P. Krestin, Wiro J. Niessen
2009	—	`conf`	Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas. MICCAI (1) Olivier Commowick, Simon K. Warfield, Grégoire Malandain
2008	J	`jnl`	A quantitative assessment of approaches to mesh generation for surgical simulation. Eng. Comput. Bhautik J. Joshi, Andriy Fedorov, Nikos Chrisochoides, Simon K. Warfield, Sébastien Ourselin
2008	J	`jnl`	A unified framework for clustering and quantitative analysis of white matter fiber tracts. Medical Image Anal. Mahnaz Maddah, W. Eric L. Grimson, Simon K. Warfield, William M. Wells III
2008	—	`conf`	Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients. ISBI Julien Dauguet, Simon K. Warfield, Edward Bromfield, Alexandra J. Golby, Jong Woo Lee
2008	—	`conf`	Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients. MICCAI (1) Olivier Commowick, Pierre Fillard, Olivier Clatz, Simon K. Warfield
2008	—	`conf`	EEG to MRI Registration Based on Global and Local Similarities of MRI Intensity Distributions. MICCAI (1) Ziga Spiclin, Arne Hans, Frank H. Duffy, Simon K. Warfield, Bostjan Likar, Franjo Pernus
2008	—	`conf`	Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures. ISVC (1) Andriy Fedorov, Eric Billet, Marcel Prastawa, Guido Gerig, Alireza Radmanesh, Simon K. Warfield, Ron Kikinis, Nikos Chrisochoides
2007	J	`jnl`	A fuzzy system for helping medical diagnosis of malformations of cortical development. J. Biomed. Informatics Silvia Alayón, Richard Robertson, Simon K. Warfield, Juan Ruiz-Alzola
2007	—	`conf`	Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. MICCAI (2) Julien Dauguet, Davi Bock, R. Clay Reid, Simon K. Warfield
2007	—	`conf`	Application-Driven Quantitative Assessment of Approaches to Mesh Generation. ISBI Bhautik J. Joshi, Andriy Fedorov, Nikos Chrisochoides, Simon K. Warfield, Sébastien Ourselin
2007	—	`conf`	Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. MICCAI (2) Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin
2007	—	`conf`	Automatic Segmentation of the Bones from Mr Images of The Knee. ISBI Jurgen Fripp, Sébastien Ourselin, Simon K. Warfield, Stuart Crozier
2007	J	`jnl`	Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. NeuroImage Julien Dauguet, Sharon Peled, Vladimir Berezovskii, Thierry Delzescaux, Simon K. Warfield, Richard T. Born, Carl-Fredrik Westin
2007	J	`jnl`	Computational Brain Tumours. ERCIM News Olivier Clatz, Ender Konukoglu, Pierre-Yves Bondiau, Simon K. Warfield, Hervé Delingette, Nicholas Ayache
2007	J	`jnl`	Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. NeuroImage Andrea J. U. Mewes, Lilla Zöllei, Petra S. Hüppi, Heidelise Als, Gloria B. McAnulty, Terrie E. Inder, William M. Wells III, Simon K. Warfield
2007	J	`jnl`	Estimation of the deformations induced by articulated bodies: Registration of the spinal column. Biomed. Signal Process. Control. Aloys du Bois d'Aische, Mathieu De Craene, Xavier Geets, Vincent Grégoire, Benoît Macq, Simon K. Warfield
2007	—	`conf`	Evaluation of Brain Image Nonrigid Registration Algorithms Based on Log-euclidean Mr-dti Consistency Measures. ISBI Francisco Javier Sánchez Castro, Olivier Clatz, Julien Dauguet, Neculai Archip, Jean-Philippe Thiran, Simon K. Warfield
2007	Misc	`conf`	Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. International Conference on Computational Science (1) Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Daniel Goldberg-Zimring, Daniel F. Kacher, Stephen Whalen, Ron Kikinis, Ferenc A. Jolesz, Olivier Clatz, Simon K. Warfield, Peter M. Black, Alexandra J. Golby
2007	—	`conf`	Non-rigid Registration of Pre-procedural MR Images with Intra-procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations. MICCAI (2) Neculai Archip, Servet Tatli, Paul R. Morrison, Ferenc A. Jolesz, Simon K. Warfield, Stuart G. Silverman
2007	J	`jnl`	Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. NeuroImage Neculai Archip, Olivier Clatz, Stephen Whalen, Daniel F. Kacher, Andriy Fedorov, Andriy Kot, Nikos Chrisochoides, Ferenc A. Jolesz, Alexandra J. Golby, Peter M. Black, Simon K. Warfield
2007	—	`conf`	Probabilistic Clustering and Quantitative Analysis of White Matter Fiber Tracts. IPMI Mahnaz Maddah, William M. Wells III, Simon K. Warfield, Carl-Fredrik Westin, W. Eric L. Grimson
2006	—	`conf`	3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. MICCAI (1) Julien Dauguet, Sharon Peled, Vladimir Berezovskii, Thierry Delzescaux, Simon K. Warfield, Richard T. Born, Carl-Fredrik Westin
2006	—	`conf`	A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages. Image-Guided Procedures Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin
2006	—	`conf`	An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. ISBI Andriy Fedorov, Nikos Chrisochoides, Ron Kikinis, Simon K. Warfield
2006	J	`jnl`	Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. NeuroImage Ying Wu, Simon K. Warfield, I. Leng Tan, William M. Wells III, Dominik S. Meier, Ronald A. van Schijndel, Frederik Barkhof, Charles R. G. Guttmann
2006	—	`conf`	Automatic Segmentation of the Knee Bones using 3D Active Shape Models. ICPR (1) Jurgen Fripp, Simon K. Warfield, Stuart Crozier, Sébastien Ourselin
2006	—	`conf`	Highly Accurate Segmentation of Brain Tissue and Subcortical Gray Matter from Newborn MRI. MICCAI (1) Neil I. Weisenfeld, Andrea J. U. Mewes, Simon K. Warfield
2006	A	`conf`	Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. SC Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Peter M. Black, Olivier Clatz, Alexandra J. Golby, Ron Kikinis, Simon K. Warfield
2006	—	`conf`	Integration of patient specific modeling and advanced image processing techniques for image-guided neurosurgery. Image-Guided Procedures Neculai Archip, Andriy Fedorov, Bryn Lloyd, Nikos Chrisochoides, Alexandra J. Golby, Peter M. Black, Simon K. Warfield
2006	—	`conf`	On-Demand High Performance Computing: Image Guided Neuro-Surgery Feasibility Study. ICPADS (2) Tharaka Devadithya, Kim K. Baldridge, Adam Birnbaum, Amitava Majumdar, Dong Ju Choi, Richard Wolski, Simon K. Warfield, Neculai Archip
2006	—	`conf`	Segmentation of newborn brain MRI. ISBI Neil I. Weisenfeld, Andrea J. U. Mewes, Simon K. Warfield
2006	—	`conf`	Statistical modeling and EM clustering of white matter fiber tracts. ISBI Mahnaz Maddah, W. Eric L. Grimson, Simon K. Warfield
2006	—	`conf`	Validation of Image Segmentation by Estimating Rater Bias and Variance. MICCAI (2) Simon K. Warfield, Kelly H. Zou, William M. Wells III
2006	—	`conf`	XFEM-based modeling of successive resections for preoperative image updating. Image-Guided Procedures Lara M. Vigneron, Pierre A. Robe, Simon K. Warfield, Jacques G. Verly
2005	—	`conf`	3D Statistical Shape Models to Embed Spatial Relationship Information. CVBIA Jurgen Fripp, Pierrick Bourgeat, Andrea J. U. Mewes, Simon K. Warfield, Stuart Crozier, Sébastien Ourselin
2005	Misc	`conf`	A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery. International Conference on Computational Science (2) Amitava Majumdar, Adam Birnbaum, Dong Ju Choi, Abhishek Trivedi, Simon K. Warfield, Kim K. Baldridge, Petr Krysl
2005	J	`jnl`	An EM algorithm for shape classification based on level sets. Medical Image Anal. Andy Tsai, William M. Wells III, Simon K. Warfield, Alan S. Willsky
2005	—	`conf`	An articulated registration method. ICIP (1) Aloys du Bois d'Aische, Mathieu De Craene, Benoît Macq, Simon K. Warfield
2005	A	`conf`	Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. MICCAI Mahnaz Maddah, Andrea J. U. Mewes, Steven Haker, W. Eric L. Grimson, Simon K. Warfield
2005	Misc	`conf`	Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. DICTA Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin
2005	—	`conf`	Brain Shift Computation Using a Fully Nonlinear Biomechanical Model. MICCAI (2) Adam Wittek, Ron Kikinis, Simon K. Warfield, Karol Miller
2005	J	`jnl`	Capturing intraoperative deformations: research experience at Brigham and Women's hospital. Medical Image Anal. Simon K. Warfield, Steven Haker, Ion-Florin Talos, Corey Kemper, Neil I. Weisenfeld, Andrea J. U. Mewes, Daniel Goldberg-Zimring, Kelly H. Zou, Carl-Fredrik Westin, William M. Wells III, Clare M. Tempany, Alexandra J. Golby, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis
2005	A	`conf`	Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation. MICCAI Steven Haker, William M. Wells III, Simon K. Warfield, Ion-Florin Talos, Jui G. Bhagwat, Daniel Goldberg-Zimring, Asim Mian, Lucila Ohno-Machado, Kelly H. Zou
2005	J	`jnl`	Efficient multi-modal dense field non-rigid registration: alignment of histological and section images. Medical Image Anal. Aloys du Bois d'Aische, Mathieu De Craene, Xavier Geets, Vincent Grégoire, Benoît Macq, Simon K. Warfield
2005	—	`conf`	Hybrid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness. MICCAI (2) Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc A. Jolesz, Nicholas Ayache, Simon K. Warfield
2005	Misc	`conf`	Medical Image Analysis for Image Guided Therapy. DICTA Simon K. Warfield
2005	—	`conf`	Multi-subject variational registration for probabilistic unbiased atlas generation. ICIP (3) Mathieu De Craene, Aloys du Bois d'Aische, Benoît Macq, Simon K. Warfield
2005	J	`jnl`	Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans. Medical Imaging Olivier Clatz, Maxime Sermesant, Pierre-Yves Bondiau, Hervé Delingette, Simon K. Warfield, Grégoire Malandain, Nicholas Ayache
2005	J	`jnl`	Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans. Medical Imaging Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc A. Jolesz, Nicholas Ayache, Simon K. Warfield
2005	—	`conf`	Spectral Clustering Algorithms for Ultrasound Image Segmentation. MICCAI (2) Neculai Archip, Robert Rohling, Peter Cooperberg, Hamid Tahmasebpour, Simon K. Warfield
2004	—	`conf`	: Multi-subject Registration for Unbiased Statistical Atlas Construction. MICCAI (1) Mathieu De Craene, Aloys du Bois d'Aische, Benoît Macq, Simon K. Warfield
2004	—	`conf`	A Prospective Multi-institutional Study of the Reproducibility of fMRI: A Preliminary Report from the Biomedical Informatics Research Network. MICCAI (2) Kelly H. Zou, Douglas N. Greve, Meng Wang, Steven D. Pieper, Simon K. Warfield, Nathan S. White, Mark G. Vangel, Ron Kikinis, William M. Wells III, First Birn
2004	—	`conf`	An Anisotropic Material Model for Image Guided Neurosurgery. MICCAI (2) Corey Kemper, Ion-Florin Talos, Alexandra J. Golby, Peter M. Black, Ron Kikinis, W. Eric L. Grimson, Simon K. Warfield
2004	—	`conf`	Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE). MICCAI (1) Mahnaz Maddah, Kelly H. Zou, William M. Wells III, Ron Kikinis, Simon K. Warfield
2004	—	`conf`	Coupling Statistical Segmentation and PCA Shape Modeling. MICCAI (1) Kilian M. Pohl, Simon K. Warfield, Ron Kikinis, W. Eric L. Grimson, William M. Wells III
2004	B	`conf`	Dense deformation field estimation for brain intraoperative images registration. Image Processing Mathieu S. De Craene, Aloys du Bois d'Aische, Ion-Florin Talos, Matthieu Ferrant, Peter McL. Black, Ferenc A. Jolesz, Ron Kikinis, Benoît Macq, Simon K. Warfield
2004	—	`conf`	Improved Non-rigid Registration of Prostate MRI. MICCAI (1) Aloys du Bois d'Aische, Mathieu De Craene, Steven Haker, Neil I. Weisenfeld, Clare M. Tempany, Benoît Macq, Simon K. Warfield
2004	J	`jnl`	Improved watershed transform for medical image segmentation using prior information. IEEE Trans. Medical Imaging Vicente Grau, Andrea J. U. Mewes, Mariano Alcañiz Raya, Ron Kikinis, Simon K. Warfield
2004	—	`conf`	In Silico Tumor Growth: Application to Glioblastomas. MICCAI (2) Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, Grégoire Malandain, Maxime Sermesant, Simon K. Warfield, Nicholas Ayache
2004	—	`conf`	Landmark-Guided Surface Matching and Volumetric Warping for Improved Prostate Biopsy Targeting and Guidance. MICCAI (1) Steven Haker, Simon K. Warfield, Clare M. Tempany
2004	—	`conf`	Level Set Methods in an EM Framework for Shape Classification and Estimation. MICCAI (1) Andy Tsai, William M. Wells III, Simon K. Warfield, Alan S. Willsky
2004	—	`conf`	Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method. MICCAI (2) Lara M. Vigneron, Jacques G. Verly, Simon K. Warfield
2004	—	`conf`	Multi-Modal Non-Rigid Registration Using a Stochastic Gradient Approximation. ISBI Mathieu De Craene, Aloys du Bois d'Aische, Benoît Macq, Florian Kipfmueller, Neil I. Weisenfeld, Steven Haker, Simon K. Warfield
2004	—	`conf`	Normalization of Joint Image-Intensity Statistics in MRI using the Kullback-Leibler Divergence. ISBI Neil I. Weisenfeld, Simon K. Warfield
2004	—	`conf`	On Extended Finite Element Method (XFEM) for Modelling of Organ Deformations Associated with Surgical Cuts. ISMS Lara M. Vigneron, Jacques G. Verly, Simon K. Warfield
2004	J	`jnl`	Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans. Medical Imaging Simon K. Warfield, Kelly H. Zou, William M. Wells III
2004	—	`conf`	Validation of 3D assessment of MR imaging-guided percutaneous cryotherapy of a soft-tissue metastasis. CARS Christian P. Zentai, Daniel Worku, Kemal Tuncali, Kelly H. Zou, Paul R. Morrison, Simon K. Warfield, R. M. M. Seibel, Stuart G. Silverman
2003	—	`conf`	A New Technique for Multi-modal 3D Image Registration. WBIR Gjenna Stippel, James Ellsmere, Simon K. Warfield, William M. Wells III, Wilfried Philips
2003	—	`conf`	An Efficient Algorithm for Multiple Sclerosis Segmentation from Brain MRI. EUROCAST Rubén Cárdenes, Simon K. Warfield, Elsa M. Macías, Jose Aurelio Santana, Juan Ruiz-Alzola
2003	—	`conf`	Capturing Brain Deformation. IS4TH Simon K. Warfield, Ion-Florin Talos, Corey Kemper, Lauren O'Donnell, Carl-Fredrik Westin, William M. Wells III, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis
2003	—	`conf`	Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery. MICCAI (1) Ion-Florin Talos, Lauren O'Donnell, Carl-Fredrik Westin, Simon K. Warfield, William M. Wells III, Seung-Schik Yoo, Lawrence P. Panych, Alexandra J. Golby, Hatsuho Mamata, Stefan S. Maier, Peter Ratiu, Charles R. G. Guttmann, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis
2003	—	`conf`	Geostatistical Medical Image Registration. MICCAI (2) Juan Ruiz-Alzola, Eduardo Suárez, Carlos Alberola-López, Simon K. Warfield, Carl-Fredrik Westin
2003	—	`conf`	K-Voronoi diagrams computing in arbitrary domains. ICIP (2) Rubén Cárdenes, Simon K. Warfield, Andrea J. U. Mewes, Juan Ruiz-Alzola
2003	—	`conf`	Occlusion points propagation geodesic distance transformation. ICIP (1) Rubén Cárdenes, Simon K. Warfield, Elsa M. Macías, Juan Ruiz-Alzola
2003	J	`jnl`	Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans. Biomed. Eng. Sylvain Jaume, Matthieu Ferrant, Benoît Macq, Lennox Hoyte, Julia Fielding, Andreas Schreyer, Ron Kikinis, Simon K. Warfield
2002	—	`conf`	Automatic Nonrigid Registration for Tracking Brain Shift During Neurosurgery. Bildverarbeitung für die Medizin Jan Rexilius, Heinz Handels, Arya Nabavi, Ron Kikinis, Simon K. Warfield
2002	—	`conf`	Deformable registration of DT-MRI data based on transformation invariant tensor characteristics. ISBI Alexandre Guimond, Charles R. G. Guttmann, Simon K. Warfield, Carl-Fredrik Westin
2002	—	`conf`	Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. MICCAI (1) Kilian M. Pohl, William M. Wells III, Alexandre Guimond, Kiyoto Kasai, Martha Elizabeth Shenton, Ron Kikinis, W. Eric L. Grimson, Simon K. Warfield
2002	—	`conf`	Labeling the Brain Surface Using a Deformable Multiresolution Mesh. MICCAI (1) Sylvain Jaume, Benoît Macq, Simon K. Warfield
2002	—	`conf`	Multimodale nicht-rigide Registrierung von Ultraschall und MR-Bilddaten unter Verwendung eines biomechanischen Modells. Bildverarbeitung für die Medizin J. F. Verhey, A. Ludwig, Jan Rexilius, Simon K. Warfield, C. T. Mamisch, Ron Kikinis, Carl-Fredrik Westin, R. M. M. Seibel, Otto Rienhoff
2002	J	`jnl`	Nonrigid registration of 3D tensor medical data. Medical Image Anal. Juan Ruiz-Alzola, Carl-Fredrik Westin, Simon K. Warfield, Carlos Alberola-López, Stefan S. Maier, Ron Kikinis
2002	J	`jnl`	Serial registration of intraoperative MR images of the brain. Medical Image Anal. Matthieu Ferrant, Arya Nabavi, Benoît Macq, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis, Simon K. Warfield
2002	—	`conf`	Simultaneous validation of image segmentation and assessment of expert quality [tumor MRI application]. ISBI Simon K. Warfield, Kelly H. Zou, Michael Kaus, William M. Wells III
2002	—	`conf`	Statistical Validation of Automated Probabilistic Segmentation against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors. MICCAI (1) Kelly H. Zou, William M. Wells III, Michael Kaus, Ron Kikinis, Ferenc A. Jolesz, Simon K. Warfield
2002	—	`conf`	Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm. MICCAI (1) Simon K. Warfield, Kelly H. Zou, William M. Wells III
2001	A	`conf`	A Binary Entropy Measure to Assess Nonrigid Registration Algorithms. MICCAI Simon K. Warfield, Jan Rexilius, Petra S. Huppi, Terrie E. Inder, Erik G. Miller, William M. Wells III, Gary P. Zientara, Ferenc A. Jolesz, Ron Kikinis
2001	A	`conf`	A Novel Nonrigid Registration Algorithm and Applications. MICCAI Jan Rexilius, Simon K. Warfield, Charles R. G. Guttmann, X. Wei, R. Benson, L. Wolfson, Martha Elizabeth Shenton, Heinz Handels, Ron Kikinis
2001	—	`conf`	High Performance Computing in Image Guided Therapy: Computer Assisted Three-Dimensional Planning and Real-Time Navigation for Neurosurgical Procedures. Bildverarbeitung für die Medizin Ron Kikinis, Ion-Florin Talos, Simon K. Warfield, Arya Nabavi, David G. Walker, Ferenc A. Jolesz, Peter M. Black
2001	A	`conf`	Multiresolution Signal Processing on Meshes for Automatic Pathological Shape Characterization. MICCAI Sylvain Jaume, Matthieu Ferrant, Andreas Schreyer, Lennox Hoyte, Benoît Macq, Julia Fielding, Ron Kikinis, Simon K. Warfield
2001	J	`jnl`	Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. IEEE Trans. Medical Imaging Matthieu Ferrant, Arya Nabavi, Benoît Macq, Ferenc A. Jolesz, Ron Kikinis, Simon K. Warfield
2001	A	`conf`	Surface Based Atlas Matching of the Brain Using Deformable Surfaces and Volumetric Finite Elements. MICCAI Matthieu Ferrant, Olivier Cuisenaire, Benoît Macq, Jean-Philippe Thiran, Martha Elizabeth Shenton, Ron Kikinis, Simon K. Warfield
2001	A	`conf`	Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: A Generic Approach. MICCAI Chahin Pachai, Yue Min Zhu, Charles R. G. Guttmann, Ron Kikinis, Ferenc A. Jolesz, Gérard Gimenez, Jean-Claude Froment, Christian Confavreux, Simon K. Warfield
2000	J	`jnl`	Adaptive, template moderated, spatially varying statistical classification. Medical Image Anal. Simon K. Warfield, Michael Kaus, Ferenc A. Jolesz, Ron Kikinis
2000	—	`conf`	Deformable Modeling for Characterizing Biomedical Shape Changes. DGCI Matthieu Ferrant, Benoît Macq, Arya Nabavi, Simon K. Warfield
2000	A	`conf`	Intraoperative Segmentation and Nonrigid Registration for Image Guided Therapy. MICCAI Simon K. Warfield, Arya Nabavi, Torsten Butz, Kemal Tuncali, Stuart G. Silverman, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis
2000	A	`conf`	Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data. MICCAI Juan Ruiz-Alzola, Carl-Fredrik Westin, Simon K. Warfield, Arya Nabavi, Ron Kikinis
2000	A	`conf`	Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation. MICCAI Torsten Butz, Simon K. Warfield, Kemal Tuncali, Stuart G. Silverman, Eric van Sonnenberg, Ferenc A. Jolesz, Ron Kikinis
2000	A	`conf`	Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery. SC Simon K. Warfield, Matthieu Ferrant, Xavier Gallez, Arya Nabavi, Ferenc A. Jolesz, Ron Kikinis
2000	A	`conf`	Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. MICCAI Matthieu Ferrant, Simon K. Warfield, Arya Nabavi, Ferenc A. Jolesz, Ron Kikinis
2000	A	`conf`	Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors. MICCAI Michael Kaus, Arya Nabavi, C. T. Mamisch, William M. Wells III, Ferenc A. Jolesz, Ron Kikinis, Simon K. Warfield
1999	A	`conf`	3D Image Matching Using a Finite Element Based Elastic Deformation Model. MICCAI Matthieu Ferrant, Simon K. Warfield, Charles R. G. Guttmann, Robert V. Mulkern, Ferenc A. Jolesz, Ron Kikinis
1999	A	`conf`	A Volumetric Optical Flow Method for Measurement of Brain Deformation from Intraoperative Magnetic Resonance Images. MICCAI Nobuhiko Hata, Arya Nabavi, Simon K. Warfield, William M. Wells III, Ron Kikinis, Ferenc A. Jolesz
1999	—	`conf`	Adaptive Template Moderated Brain Tumor Segmentation in MRI. Bildverarbeitung für die Medizin Michael Kaus, Simon K. Warfield, Ferenc A. Jolesz, Ron Kikinis
1999	A	`conf`	Fractional Segmentation of White Matter. MICCAI Simon K. Warfield, Carl-Fredrik Westin, Charles R. G. Guttmann, Marilyn S. Albert, Ferenc A. Jolesz, Ron Kikinis
1999	A	`conf`	Segmentation of Meningiomas and Low Grade Gliomas in MRI. MICCAI Michael Kaus, Simon K. Warfield, Arya Nabavi, E. Chatzidakis, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis
1998	J	`jnl`	A High Performance Computing Approach to the Registration of Medical Imaging Data. Parallel Comput. Simon K. Warfield, Ferenc A. Jolesz, Ron Kikinis
1998	A	`conf`	Adaptive Template Moderated Spatially Varying Statistical Classification. MICCAI Simon K. Warfield, Michael Kaus, Ferenc A. Jolesz, Ron Kikinis
1998	A	`conf`	Multimodality Deformable Registration of Pre- and Intraoperative Images for MRI-guided Brain Surgery. MICCAI Nobuhiko Hata, Takeyoshi Dohi, Simon K. Warfield, William M. Wells III, Ron Kikinis, Ferenc A. Jolesz
1998	A	`conf`	Real-Time Image Segmentation for Image-Guided Surgery. SC Simon K. Warfield, Ferenc A. Jolesz, Ron Kikinis
1998	A	`conf`	Tensor Controlled Local Structure Enhancement of CT Images for Bone Segmentation. MICCAI Carl-Fredrik Westin, Simon K. Warfield, Abhir Bhalerao, L. Mui, Jens A. Richolt, Ron Kikinis
1996	J	`jnl`	Fast k-NN classification for multichannel image data. Pattern Recognit. Lett. Simon K. Warfield