Simon D. W. Frost

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2019 J jnl
genieR: An R package for inference of demographic history of phylogenies.
J. Open Source Softw.
Fei Xiang, Bethany L. Dearlove, Simon D. W. Frost
2016 J jnl
Gillespie.jl: Stochastic Simulation Algorithm in Julia.
J. Open Source Softw.
Simon D. W. Frost
2015 J jnl
Measuring Asymmetry in Time-Stamped Phylogenies.
PLoS Comput. Biol.
Bethany L. Dearlove, Simon D. W. Frost
2013 J jnl
Inferring the Source of Transmission with Phylogenetic Data.
PLoS Comput. Biol.
Erik M. Volz, Simon D. W. Frost
2012 J jnl
Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection.
PLoS Comput. Biol.
Erik M. Volz, James S. Koopman, Melissa J. Ward, Andrew J. Leigh Brown, Simon D. W. Frost
2010 J jnl
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology.
Bioinform.
Wayne Delport, Art F. Y. Poon, Simon D. W. Frost, Sergei L. Kosakovsky Pond
2009 J jnl
An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.
PLoS Comput. Biol.
Sergei L. Kosakovsky Pond, David Posada, Eric W. Stawiski, Colombe Chappey, Art F. Y. Poon, Gareth Hughes, Esther Fearnhill, Mike B. Gravenor, Andrew J. Leigh Brown, Simon D. W. Frost
2008 J jnl
Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models.
Bioinform.
Art F. Y. Poon, Fraser I. Lewis, Simon D. W. Frost, Sergei L. Kosakovsky Pond
2007 J jnl
An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope.
PLoS Comput. Biol.
Art F. Y. Poon, Fraser I. Lewis, Sergei L. Kosakovsky Pond, Simon D. W. Frost
2007 J jnl
Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope.
PLoS Comput. Biol.
Art F. Y. Poon, Fraser I. Lewis, Sergei L. Kosakovsky Pond, Simon D. W. Frost
2006 J jnl
Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses.
PLoS Comput. Biol.
Sergei L. Kosakovsky Pond, Simon D. W. Frost, Zehava Grossman, Michael B. Gravenor, Douglas D. Richman, Andrew J. Leigh Brown
2006 J jnl
GARD: a genetic algorithm for recombination detection.
Bioinform.
Sergei L. Kosakovsky Pond, David Posada, Michael B. Gravenor, Christopher H. Woelk, Simon D. W. Frost
2005 J jnl
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments.
Bioinform.
Sergei L. Kosakovsky Pond, Simon D. W. Frost
2005 J jnl
HyPhy: hypothesis testing using phylogenies.
Bioinform.
Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse