Simon A. Berger

15 papers C 3Misc 1Journal 4Unranked 6
YearRankTypeTitle / Venue / Authors
2013 — conf
A Generic Vectorization Scheme and a GPU Kernel for the Phylogenetic Likelihood Library.
IPDPS Workshops
Fernando Izquierdo-Carrasco, Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
2013 — —
Phylogeny-Aware Placement and Alignment Methods for Short Reads.
Simon A. Berger
2013 J jnl
libgapmis: extending short-read alignments.
BMC Bioinform.
Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
2012 — conf
A versatile UDP/IP based PC ↔ FPGA communication platform.
ReConFig
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
2012 — conf
An Optimized Reconfigurable System for Computing the Phylogenetic Likelihood Function on DNA Data.
IPDPS Workshops
Simon A. Berger, Nikolaos Alachiotis, Alexandros Stamatakis
2012 J jnl
Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel.
BMC Bioinform.
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
2012 — conf
Libgapmis: An ultrafast library for short-read single-gap alignment.
BIBM Workshops
Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
2012 J jnl
RAxML-Light: a tool for computing terabyte phylogenies.
Bioinform.
Alexandros Stamatakis, Andre J. Aberer, Christian Goll, Stephen A. Smith, Simon A. Berger, Fernando Izquierdo-Carrasco
2011 Misc conf
Accelerating Phylogeny-Aware Short DNA Read Alignment with FPGAs.
FCCM
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
2011 J jnl
Aligning short reads to reference alignments and trees.
Bioinform.
Simon A. Berger, Alexandros Stamatakis
2011 — conf
Parallel Structural Graph Clustering.
ECML/PKDD (3)
Madeleine Seeland, Simon A. Berger, Alexandros Stamatakis, Stefan Kramer
2010 C conf
Accuracy of morphology-based phylogenetic fossil placement under Maximum Likelihood.
AICCSA
Simon A. Berger, Alexandros Stamatakis
2010 C conf
Efficient PC-FPGA Communication over Gigabit Ethernet.
CIT
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
2010 C conf
Evolutionary placement of short sequence reads on multi-core architectures.
AICCSA
Alexandros Stamatakis, Zsolt Komornik, Simon A. Berger
2009 — conf
Accuracy and Performance of Single versus Double Precision Arithmetics for Maximum Likelihood Phylogeny Reconstruction.
PPAM (2)
Simon A. Berger, Alexandros Stamatakis