Siguo Wang

21 papers Journal 17Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
A brief survey of deep learning-based models for CircRNA-protein binding sites prediction.
Neurocomputing
Zhen Shen, Lin Yuan, Wenzheng Bao, Siguo Wang, Qinhu Zhang, De-Shuang Huang
2025 J jnl
Graph pooling for graph-level representation learning: a survey.
Artif. Intell. Rev.
Zhi-Peng Li, Siguo Wang, Qinhu Zhang, Yi-Jie Pan, Naian Xiao, Jiayang Guo, Chang-An Yuan, Wen-Jian Liu, De-Shuang Huang
2025 J jnl
NPENN: A Noise Perturbation Ensemble Neural Network for Microbiome Disease Phenotype Prediction.
IEEE J. Biomed. Health Informatics
Zhen Cui, Yan Wu, Qinhu Zhang, Siguo Wang, Zhen-Hao Guo
2024 — conf
Predicting Transcription Factor Binding Signals Based on a Novel Encoder-Decoder Framework.
ICAI (1)
Siguo Wang, Zhipeng Li, Qinhu Zhang
2024 J jnl
scCorrector: a robust method for integrating multi-study single-cell data.
Briefings Bioinform.
Zhen-Hao Guo, Yan-Bin Wang, Siguo Wang, Qinhu Zhang, De-Shuang Huang
2023 J jnl
Computational prediction and characterization of cell-type-specific and shared binding sites.
Bioinform.
Qinhu Zhang, Pengrui Teng, Siguo Wang, Ying He, Zhen Cui, Zhenghao Guo, Yixin Liu, Changan Yuan, Qi Liu, De-Shuang Huang
2023 J jnl
DeepTPpred: A Deep Learning Approach With Matrix Factorization for Predicting Therapeutic Peptides by Integrating Length Information.
IEEE J. Biomed. Health Informatics
Zhen Cui, Siguo Wang, Ying He, Zhan-Heng Chen, Qinhu Zhang
2023 J jnl
In silico prediction methods of self-interacting proteins: an empirical and academic survey.
Frontiers Comput. Sci.
Zhanheng Chen, Zhuhong You, Qinhu Zhang, Zhen-Hao Guo, Siguo Wang, Yanbin Wang
2023 J jnl
Predicting the Sequence Specificities of DNA-Binding Proteins by DNA Fine-Tuned Language Model With Decaying Learning Rates.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ying He, Qinhu Zhang, Siguo Wang, Zhanheng Chen, Zhen Cui, Zhen-Hao Guo, De-Shuang Huang
2023 J jnl
Using Fully Convolutional Network to Locate Transcription Factor Binding Sites Based on DNA Sequence and Conservation Information.
IEEE ACM Trans. Comput. Biol. Bioinform.
Qinhu Zhang, Youhong Xu, Siguo Wang, Yong Wu, Yuan-Nong Ye, Chang-An Yuan, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang
2023 J jnl
scInterpreter: a knowledge-regularized generative model for interpretably integrating scRNA-seq data.
BMC Bioinform.
Zhen-Hao Guo, Yan Wu, Siguo Wang, Qinhu Zhang, Jin-Ming Shi, Yan-Bin Wang, Zhan-Heng Chen
2022 J jnl
Base-resolution prediction of transcription factor binding signals by a deep learning framework.
PLoS Comput. Biol.
Qinhu Zhang, Ying He, Siguo Wang, Zhanheng Chen, Zhen-Hao Guo, Zhen Cui, Qi Liu, De-Shuang Huang
2022 J jnl
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes.
PLoS Comput. Biol.
Siguo Wang, Qinhu Zhang, Ying He, Zhen Cui, Zhen-Hao Guo, Kyungsook Han, De-Shuang Huang
2022 J jnl
FCNGRU: Locating Transcription Factor Binding Sites by Combing Fully Convolutional Neural Network With Gated Recurrent Unit.
IEEE J. Biomed. Health Informatics
Siguo Wang, Ying He, Zhanheng Chen, Qinhu Zhang
2022 J jnl
Predicting In-Vitro DNA-Protein Binding With a Spatially Aligned Fusion of Sequence and Shape.
IEEE ACM Trans. Comput. Biol. Bioinform.
Qinhu Zhang, Yindong Zhang, Siguo Wang, Zhan-Heng Chen, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang
2021 J jnl
A survey on deep learning in DNA/RNA motif mining.
Briefings Bioinform.
Ying He, Zhen Shen, Qinhu Zhang, Siguo Wang, De-Shuang Huang
2021 J jnl
Locating transcription factor binding sites by fully convolutional neural network.
Briefings Bioinform.
Qinhu Zhang, Siguo Wang, Zhanheng Chen, Ying He, Qi Liu, De-Shuang Huang
2020 — conf
A New Method Combining DNA Shape Features to Improve the Prediction Accuracy of Transcription Factor Binding Sites.
ICIC (2)
Siguo Wang, Zhen Shen, Ying He, Qinhu Zhang, Changan Yuan, Xiao Qin, Hongjie Wu, Xingming Zhao
2020 — conf
Three-Layer Dynamic Transfer Learning Language Model for E. Coli Promoter Classification.
ICIC (2)
Ying He, Zhen Shen, Qinhu Zhang, Siguo Wang, Changan Yuan, Xiao Qin, Hongjie Wu, Xingming Zhao
2018 J jnl
Identifying Essential Proteins in Dynamic PPI Network with Improved FOA.
Int. J. Comput. Commun. Control
Xiujuan Lei, Siguo Wang, Linqiang Pan
2017 — conf
Predicting Essential Proteins Based on Gene Expression Data, Subcellular Localization and PPI Data.
BIC-TA
Xiujuan Lei, Siguo Wang, Linqiang Pan