Shumpei Ishikawa

16 papers Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Performance Evaluation of Open-Source Large Language Models for Assisting Pathology Report Writing in Japanese.
CoRR
Masataka Kawai, Singo Sakashita, Shumpei Ishikawa, Shogo Watanabe, Anna Matsuoka, Mikio Sakurai, Yasuto Fujimoto, Yoshiyuki Takahara, Atsushi Ohara, Hirohiko Miyake, Genichiro Ishii
2025 J jnl
Comprehensive Pathological Image Segmentation via Teacher Aggregation for Tumor Microenvironment Analysis.
CoRR
Daisuke Komura, Maki Takao, Mieko Ochi, Takumi Onoyama, Hiroto Katoh, Hiroyuki Abe, Hiroyuki Sano, Teppei Konishi, Toshio Kumasaka, Tomoyuki Yokose, Yohei Miyagi, Tetsuo Ushiku, Shumpei Ishikawa
2025 J jnl
Medicine for artificial intelligence: applying a medical framework to AI anomalies.
Frontiers Artif. Intell.
Takahiro Kato, Daisuke Komura, Binaya Panda, Shumpei Ishikawa
2025 J jnl
SpatialKNifeY (SKNY): Extending from spatial domain to surrounding area to identify microenvironment features with single-cell spatial omics data.
PLoS Comput. Biol.
Shunsuke A. Sakai, Ryosuke Nomura, Satoi Nagasawa, Sunggi Chi, Ayako Suzuki, Yutaka Suzuki, Mitsuho Imai, Yoshiaki Nakamura, Takayuki Yoshino, Shumpei Ishikawa, Katsuya Tsuchihara, Shun-Ichiro Kageyama, Riu Yamashita
2024 — conf
Enhanced Interpretability in Histopathological Images via Combined Tissue and Cell-Level Graph Analysis.
AMAI@MICCAI
Mieko Ochi, Daisuke Komura, Tetsuo Ushiku, Yasushi Rino, Shumpei Ishikawa
2024 J jnl
Multimodal Whole Slide Foundation Model for Pathology.
CoRR
Tong Ding, Sophia J. Wagner, Andrew H. Song, Richard J. Chen, Ming Y. Lu, Andrew Zhang, Anurag J. Vaidya, Guillaume Jaume, Muhammad Shaban, Ahrong Kim, Drew F. K. Williamson, Bowen Chen, Cristina Almagro-Pérez, Paul Doucet, Sharifa Sahai, Chengkuan Chen, Daisuke Komura, Akihiro Kawabe, Shumpei Ishikawa, Georg Gerber, Tingying Peng, Long Phi Le, Faisal Mahmood
2024 J jnl
Pathology Foundation Models.
CoRR
Mieko Ochi, Daisuke Komura, Shumpei Ishikawa
2024 J jnl
SegRep: Mask-Supervised Learning for Segment Representation in Pathology Images.
IEEE Access
Chichun Yang, Daisuke Komura, Mieko Ochi, Miwako Kakiuchi, Hiroto Katoh, Tetsuo Ushiku, Shumpei Ishikawa
2023 J jnl
Meet the authors: Daisuke Komura and Shumpei Ishikawa.
Patterns
Daisuke Komura, Shumpei Ishikawa
2023 J jnl
Restaining-based annotation for cancer histology segmentation to overcome annotation-related limitations among pathologists.
Patterns
Daisuke Komura, Takumi Onoyama, Koki Shinbo, Hiroto Odaka, Minako Hayakawa, Mieko Ochi, Ranny Rahaningrum Herdiantoputri, Haruya Endo, Hiroto Katoh, Tohru Ikeda, Tetsuo Ushiku, Shumpei Ishikawa
2022 J jnl
Viola: a structural variant signature extractor with user-defined classifications.
Bioinform.
Itsuki Sugita, Shohei Matsuyama, Hiroki Dobashi, Daisuke Komura, Shumpei Ishikawa
2019 J jnl
Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning.
BMC Bioinform.
Hiroki Konishi, Daisuke Komura, Hiroto Katoh, Shinichiro Atsumi, Hirotomo Koda, Asami Yamamoto, Yasuyuki Seto, Masashi Fukayama, Rui Yamaguchi, Seiya Imoto, Shumpei Ishikawa
2018 J jnl
A benchmark for comparing precision medicine methods in thyroid cancer diagnosis using tissue microarrays.
Bioinform.
Ching-Wei Wang, Yu-Ching Lee, Evelyne Calista, Fan Zhou, Hongtu Zhu, Ryohei Suzuki, Daisuke Komura, Shumpei Ishikawa, Shih-Ping Cheng
2017 J jnl
Machine learning methods for histopathological image analysis.
CoRR
Daisuke Komura, Shumpei Ishikawa
2006 J jnl
CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.
BMC Bioinform.
Jing Huang, Wen Wei, Joyce Chen, Jane Zhang, Guoying Liu, Xiaojun Di, Rui Mei, Shumpei Ishikawa, Hiroyuki Aburatani, Keith W. Jones, Michael H. Shapero
2006 J jnl
Noise Reduction from Genotyping Microarrays Using Probe Level Information.
Silico Biol.
Daisuke Komura, Kunihiro Nishimura, Shumpei Ishikawa, Binaya Panda, Jing Huang, Hiroshi Nakamura, Sigeo Ihara, Michitaka Hirose, Keith W. Jones, Hiroyuki Aburatani