Shuilin Jin

25 papers Journal 21Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
A comparison of integration methods for single-cell RNA sequencing data and ATAC sequencing data.
Quant. Biol.
Yulong Kan, Weihao Wang, Yunjing Qi, Zhongxiao Zhang, Xikeng Liang, Shuilin Jin
2025 J jnl
HyperDiffuseNet: A Deep Hyperbolic Manifold Learning Method for Dimensionality Reduction in Spatial Transcriptomics.
J. Comput. Biol.
Qi Jing, Shuai Wen, Yanqi Lv, Mingyu Yang, Shuilin Jin
2025 J jnl
Integration of unpaired single cell omics data by deep transfer graph convolutional network.
PLoS Comput. Biol.
Yulong Kan, Yunjing Qi, Zhongxiao Zhang, Xikeng Liang, Weihao Wang, Shuilin Jin
2025 J jnl
Quantifying batch effects for individual genes in single-cell data.
Nat. Comput. Sci.
Yang Zhou, Qiongyu Sheng, Guohua Wang, Li Xu, Shuilin Jin
2025 J jnl
Spatial domain identification method based on multi-view graph convolutional network and contrastive learning.
PLoS Comput. Biol.
Xikeng Liang, Shutong Xiao, Lu Ba, Yuhui Feng, Zhicheng Ma, Fatima Adilova, Jing Qi, Shuilin Jin
2025 J jnl
reDA: differential abundance testing on scATAC-seq data using random walk with restart.
Bioinform.
Zirui Chen, Jiao Hua, Lu Ba, Tianyun He, Boran Yang, Jing Qi, Shuilin Jin
2025 J jnl
scBCN: deep learning-based batch correction network for integration of heterogeneous single-cell data.
Briefings Bioinform.
Lei Wan, Yang Zhou, Xingzhi Wang, Jing Qin, Shuilin Jin
2025 J jnl
scGT: integration algorithm for single-cell RNA-seq and ATAC-seq based on graph transformer.
Bioinform.
Yunjing Qi, Yulong Kan, Jing Qi, Shuilin Jin
2022 J jnl
Correction: SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data.
PLoS Comput. Biol.
Jing Qi, Yang Zhou, Zicen Zhao, Shuilin Jin
2021 J jnl
SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data.
PLoS Comput. Biol.
Jing Qi, Yang Zhou, Zicen Zhao, Shuilin Jin
2020 J jnl
ERDS-Exome: A Hybrid Approach for Copy Number Variant Detection from Whole-Exome Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Renjie Tan, Jixuan Wang, Xiaoliang Wu, Liran Juan, Tianjiao Zhang, Rui Ma, Qing Zhan, Tao Wang, Shuilin Jin, Qinghua Jiang, Yadong Wang
2020 J jnl
LAK: Lasso and K-Means Based Single-Cell RNA-Seq Data Clustering Analysis.
IEEE Access
Jiao Hua, Hongkun Liu, Boyang Zhang, Shuilin Jin
2020 J jnl
NDRindex: a method for the quality assessment of single-cell RNA-Seq preprocessing data.
BMC Bioinform.
Ruiyu Xiao, Guoshan Lu, Wanqian Guo, Shuilin Jin
2019 J jnl
A Method Based on Differential Entropy-Like Function for Detecting Differentially Expressed Genes Across Multiple Conditions in RNA-Seq Studies.
Entropy
Zhuo Wang, Shuilin Jin, Chiping Zhang
2019 J jnl
BIN1 rs744373 variant shows different association with Alzheimer's disease in Caucasian and Asian populations.
BMC Bioinform.
Zhifa Han, Tao Wang, Rui Tian, Wenyang Zhou, Pingping Wang, Peng Ren, Jian Zong, Yang Hu, Shuilin Jin, Qinghua Jiang
2019 — conf
NDRindex: A method for the quality assessment of single-cell RNA-Seq preprocessing data.
BIBM
Ruiyu Xiao, Guoshan Lu, Shuilin Jin
2019 J jnl
ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.
BMC Bioinform.
Qing Zhan, Nan Wang, Shuilin Jin, Renjie Tan, Qinghua Jiang, Yadong Wang
2018 — conf
BIN1 rs744373 Variant Is Significantly Associated with Alzheimer's Disease in Caucasian but Not East Asian Populations.
ICIC (1)
Zhifa Han, Tao Wang, Rui Tian, Wenyang Zhou, Pingping Wang, Peng Ren, Jian Zong, Yang Hu, Shuilin Jin, Qinghua Jiang
2018 J jnl
Disease status affects the association between rs4813620 and the expression of Alzheimer's disease susceptibility gene
Proc. Natl. Acad. Sci. USA
Guiyou Liu, Shuilin Jin, Yang Hu, Qinghua Jiang
2018 J jnl
EWAS: epigenome-wide association study software 2.0.
Bioinform.
Jing Xu, Linna Zhao, Di Liu, Simeng Hu, Xiuling Song, Jin Li, Hongchao Lv, Lian Duan, Mingming Zhang, Qinghua Jiang, Guiyou Liu, Shuilin Jin, Mingzhi Liao, Meng Zhang, Rennan Feng, Fanwu Kong, Liangde Xu, Yongshuai Jiang
2018 — conf
ProbPFP: A Multiple Sequence Alignment Algorithm Combining Partition Function and Hidden Markov Model with Particle Swarm Optimization.
BIBM
Qing Zhan, Nan Wang, Shuilin Jin, Renjie Tan, Qinghua Jiang, Yadong Wang
2017 J jnl
DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data.
BMC Bioinform.
Zhuo Wang, Shuilin Jin, Guiyou Liu, Xiurui Zhang, Nan Wang, Deliang Wu, Yang Hu, Chiping Zhang, Qinghua Jiang, Li Xu, Yadong Wang
2016 — conf
ERDS-pe: A paired hidden Markov model for copy number variant detection from whole-exome sequencing data.
BIBM
Renjie Tan, Jixuan Wang, Xiaoliang Wu, Guoqiang Wan, Rongjie Wang, Rui Ma, Zhijie Han, Wenyang Zhou, Shuilin Jin, Qinghua Jiang, Yadong Wang
2015 J jnl
LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression.
Nucleic Acids Res.
Qinghua Jiang, Jixuan Wang, Xiaoliang Wu, Rui Ma, Tianjiao Zhang, Shuilin Jin, Zhijie Han, Renjie Tan, Jiajie Peng, Guiyou Liu, Yu Li, Yadong Wang
2013 J jnl
Predicting human microRNA-disease associations based on support vector machine.
Int. J. Data Min. Bioinform.
Qinghua Jiang, Guohua Wang, Shuilin Jin, Yu Li, Yadong Wang