Shuichi Onami

23 papers B 1Journal 16Unranked 6
YearRankTypeTitle / Venue / Authors
2025 — conf
SSBD Ontology: A Two-Tier Approach for Interoperable Bioimaging Metadata.
ISWC (2)
Yuki Yamagata, Koji Kyoda, Hiroya Itoga, Emi Fujisawa, Shuichi Onami
2025 J jnl
SSBD Ontology: A Two-Tier Approach for Interoperable Bioimaging Metadata.
CoRR
Yuki Yamagata, Koji Kyoda, Hiroya Itoga, Emi Fujisawa, Shuichi Onami
2024 J jnl
Homeostasis imbalance process ontology: a study on COVID-19 infectious processes.
BMC Medical Informatics Decis. Mak.
Yuki Yamagata, Tatsuya Kushida, Shuichi Onami, Hiroshi Masuya
2023 J jnl
Systematic analysis of cell morphodynamics in C. elegans early embryogenesis.
Frontiers Bioinform.
Yusuke Azuma, Hatsumi Okada, Shuichi Onami
2022 — conf
Knowledge Systematization for Cellular Senescence Processes by Homeostasis Imbalance Process Ontology.
ICBO
Yuki Yamagata, Shuichi Onami, Hiroshi Masuya
2022 J jnl
PHi-C2: interpreting Hi-C data as the dynamic 3D genome state.
Bioinform.
Soya Shinkai, Hiroya Itoga, Koji Kyoda, Shuichi Onami
2022 — conf
Phenotype Anomaly Detection for Biological Dynamics Data Using a Deep Generative Model.
ICANN (2)
Eisuke Ito, Takaya Ueda, Ryo Takano, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa
2021 J jnl
Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes.
BMC Bioinform.
Momoko Imakubo, Jun Takayama, Hatsumi Okada, Shuichi Onami
2019 — conf
OME Core Ontology: An OWL-based Life Science Imaging Data Model.
SWAT4HCLS
Norio Kobayashi, Josh Moore, Shuichi Onami, Jason R. Swedlow
2019 — conf
On Bringing Bioimaging Data into the Open (World).
SWAT4HCLS
Josh Moore, Norio Kobayashi, Susanne Kunis, Shuichi Onami, Jason R. Swedlow
2018 B conf
Development of an Integrated Visualization System for Phenotypic Character Networks.
PacificVis
Yosuke Onoue, Koji Kyoda, Miki Kioka, Kazutaka Baba, Shuichi Onami, Koji Koyamada
2017 J jnl
Biologically constrained optimization based cell membrane segmentation in
BMC Bioinform.
Yusuke Azuma, Shuichi Onami
2017 J jnl
Phenotype Analysis Method for Identification of Gene Functions Involved in Asymmetric Division of
J. Comput. Biol.
Sihai Yang, Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen
2016 J jnl
Nuclear detection in 4D microscope images of a developing embryo using an enhanced probability map of top-ranked intensity-ordered descriptors.
IPSJ Trans. Comput. Vis. Appl.
Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen
2016 J jnl
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena.
Bioinform.
Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami
2015 J jnl
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data.
Bioinform.
Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami
2015 — conf
Nuclear detection in 4D microscope images using enhanced probability map of top-ranked intensity-ordered descriptors.
ACPR
Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen
2013 J jnl
Evaluation of the effectiveness of simple nuclei-segmentation methods on Caenorhabditis elegans embryogenesis images.
BMC Bioinform.
Yusuke Azuma, Shuichi Onami
2013 J jnl
WDDD: Worm Developmental Dynamics Database.
Nucleic Acids Res.
Koji Kyoda, Eru Adachi, Eriko Masuda, Yoko Nagai, Yoko Suzuki, Taeko Oguro, Mitsuru Urai, Ryoko Arai, Mari Furukawa, Kumiko Shimada, Junko Kuramochi, Eriko Nagai, Shuichi Onami
2011 J jnl
A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks.
Source Code Biol. Medicine
Koji Kyoda, Kotaro Baba, Hiroaki Kitano, Shuichi Onami
2007 J jnl
A system for measuring cell division patterns of early
Syst. Comput. Jpn.
Shugo Hamahashi, Hiroaki Kitano, Shuichi Onami
2005 J jnl
Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking.
BMC Bioinform.
Shugo Hamahashi, Shuichi Onami, Hiroaki Kitano
2004 J jnl
DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants.
Bioinform.
Koji Kyoda, Kotaro Baba, Shuichi Onami, Hiroaki Kitano