Shuangsang Fang

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
Open World Knowledge Aided Single-Cell Foundation Model with Robust Cross-Modal Cell-Language Pre-training.
CoRR
Haoran Wang, Xuanyi Zhang, Shuangsang Fang, Longke Ran, Ziqing Deng, Yong Zhang, Yuxiang Li, Shaoshuai Li
2025 J jnl
BioLLM: A standardized framework for integrating and benchmarking single-cell foundation models.
Patterns
Ping Qiu, Qianqian Chen, Hua Qin, Shuangsang Fang, Yilin Zhang, Yanlin Zhang, Tianyi Xia, Lei Cao, Yong Zhang, Xiaodong Fang, Yuxiang Li, Luni Hu
2023 J jnl
Computational Approaches and Challenges in Spatial Transcriptomics.
Genom. Proteom. Bioinform.
Shuangsang Fang, Bichao Chen, Yong Zhang, Haixi Sun, Longqi Liu, Shiping Liu, Yuxiang Li, Xun Xu
2022 J jnl
TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse.
Nucleic Acids Res.
Yuexin Zhang, Chao Song, Yimeng Zhang, Yuezhu Wang, Chenchen Feng, Jiaxin Chen, Ling Wei, Qi Pan, Desi Shang, Yanbing Zhu, Jiang Zhu, Shuangsang Fang, Jun Zhao, Yongsan Yang, Xilong Zhao, Xiaozheng Xu, Qiuyu Wang, Jincheng Guo, Chunquan Li
2021 J jnl
HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine.
Nucleic Acids Res.
Shuangsang Fang, Lei Dong, Liu Liu, Jincheng Guo, Lianhe Zhao, Jiayuan Zhang, Dechao Bu, Xinkui Liu, Peipei Huo, Wanchen Cao, Qiongye Dong, Jiarui Wu, Xiaoxi Zeng, Yang Wu, Yi Zhao
2021 J jnl
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis.
Nucleic Acids Res.
Dechao Bu, Haitao Luo, Peipei Huo, Zhihao Wang, Shan Zhang, Zihao He, Yang Wu, Lianhe Zhao, Jingjia Liu, Jincheng Guo, Shuangsang Fang, Wanchen Cao, Lan Yi, Yi Zhao, Lei Kong
2021 J jnl
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants.
Nucleic Acids Res.
Lianhe Zhao, Jiajia Wang, Yanyan Li, Tingrui Song, Yang Wu, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Dong Pei, Yu Zheng, Jianqin Huang, Mingqing Xu, Runsheng Chen, Yi Zhao, Shunmin He
2019 J jnl
CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition.
Nucleic Acids Res.
Jincheng Guo, Shuangsang Fang, Yang Wu, Jianhua Zhang, Yang Chen, Jing Liu, Bo Wu, Jiarui Wu, Enmin Li, Liyan Xu, Liang Sun, Yi Zhao
2019 J jnl
SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping.
Nucleic Acids Res.
Yang Wu, Feilong Zhang, Kuo Yang, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Hairuo Hu, Kuo Gao, Wei Wang, Xuezhong Zhou, Yi Zhao, Jianxin Chen
2018 J jnl
NONCODEV5: a comprehensive annotation database for long non-coding RNAs.
Nucleic Acids Res.
Shuangsang Fang, LiLi Zhang, Jincheng Guo, Yiwei Niu, Yang Wu, Hui Li, Lianhe Zhao, Xiyuan Li, XueYi Teng, Xianhui Sun, Liang Sun, Michael Q. Zhang, Runsheng Chen, Yi Zhao
2017 J jnl
Identification and function annotation of long intervening noncoding RNAs.
Briefings Bioinform.
Haitao Luo, Dechao Bu, Liang Sun, Shuangsang Fang, Zhiyong Liu, Yi Zhao
2016 J jnl
NONCODE 2016: an informative and valuable data source of long non-coding RNAs.
Nucleic Acids Res.
Yi Zhao, Hui Li, Shuangsang Fang, Yue Kang, Wei Wu, Yajing Hao, Ziyang Li, Dechao Bu, Ninghui Sun, Michael Q. Zhang, Runsheng Chen
2015 J jnl
Implementation of Training Convolutional Neural Networks.
CoRR
Tianyi Liu, Shuangsang Fang, Yuehui Zhao, Peng Wang, Jun Zhang