Shou-Jiang Gao

13 papers Journal 8Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
A comparative evaluation of computational models for RNA modification detection using nanopore sequencing with RNA004 chemistry.
Briefings Bioinform.
Yongji Zou, Mian Umair Ahsan, Joe Chan, Wen Meng, Shou-Jiang Gao, Yufei Huang, Kai Wang
2024 — conf
ReguloGPT: Harnessing GPT for End-to-End Knowledge Graph Construction of Molecular Regulatory Pathways.
BHI
Xidong Wu, Sumin Jo, Yiming Zeng, Arun Das, Tinghe Zhang, Parth Patel, Yuanjing Wei, Lei Li, Shou-Jiang Gao, Jianqiu Zhang, Dexter Pratt, Yu-Chiao Chiu, Yufei Huang
2024 J jnl
Understanding YTHDF2-mediated mRNA degradation by m6A-BERT-Deg.
Briefings Bioinform.
Tinghe Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang
2022 J jnl
Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis.
Briefings Bioinform.
Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang
2019 J jnl
Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods.
PLoS Comput. Biol.
Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2018 J jnl
MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome.
Nucleic Acids Res.
Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang
2012 J jnl
Temporal clustering of gene expression patterns using short-time segments.
Int. J. Funct. Informatics Pers. Medicine
Nguyen T. Nguyen, Ying Ann Chiao, Yufei Huang, Shou-Jiang Gao, Merry Lindsey, Yidong Chen, Yufang Jin
2011 — conf
Computational prediction of microRNA regulatory pathways.
GENSiPS
Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2010 — conf
Computational prediction of MicroRNA regulatory pathways.
BIBM Workshops
Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2010 J jnl
Improving performance of mammalian microRNA target prediction.
BMC Bioinform.
Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2010 — conf
Temporal clustering of gene expression patterns using short-time segments.
BIBM Workshops
Nguyen T. Nguyen, Yufang Jin, Yufei Huang, Ying Ann Chiao, Shou-Jiang Gao, Merry Lindsey, Yidong Chen
2009 — conf
A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling.
IJCBS
Hui Liu, Lin Zhang, Shou-Jiang Gao, Yufei Huang
2009 J jnl
Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.
Bioinform.
Jia Meng, Shou-Jiang Gao, Yufei Huang