Shoshana J. Wodak

27 papers A 1Journal 22Unranked 4
YearRankTypeTitle / Venue / Authors
2021 J jnl
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.
Briefings Bioinform.
Vaishali P. Waman, Neeladri Sen, Mihaly Varadi, Antoine Daina, Shoshana J. Wodak, Vincent Zoete, Sameer Velankar, Christine A. Orengo
2018 J jnl
Submit a Topic Page to PLOS Computational Biology and Wikipedia.
PLoS Comput. Biol.
Daniel Mietchen, Shoshana J. Wodak, Szymon Wasik, Natalia Szostak, Christophe Dessimoz
2012 J jnl
Savant Genome Browser 2: visualization and analysis for population-scale genomics.
Nucleic Acids Res.
Marc Fiume, Eric J. M. Smith, Andrew Brook, Dario Strbenac, Brian Turner, Aziz M. Mezlini, Mark D. Robinson, Shoshana J. Wodak, Michael Brudno
2012 J jnl
Topic Pages:
PLoS Comput. Biol.
Shoshana J. Wodak, Daniel Mietchen, Andrew M. Collings, Robert B. Russell, Philip E. Bourne
2011 J jnl
DAnCER: Disease-Annotated Chromatin Epigenetics Resource.
Nucleic Acids Res.
Andrei L. Turinsky, Brian Turner, Rosanne C. Borja, James A. Gleeson, Michael Heath, Shuye Pu, Thomas Switzer, Dong Dong, Yunchen Gong, Tuan On, Xuejian Xiong, Andrew Emili, Jack Greenblatt, John Parkinson, Zhaolei Zhang, Shoshana J. Wodak
2011 J jnl
OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.
Bioinform.
Yanqi Hao, Anna Merkoulovitch, James Vlasblom, Shuye Pu, Andrei L. Turinsky, Denitza Roudeva, Brian Turner, Jack Greenblatt, Shoshana J. Wodak
2010 J jnl
Literature curation of protein interactions: measuring agreement across major public databases.
Database J. Biol. Databases Curation
Andrei L. Turinsky, Sabry Razick, Brian Turner, Ian M. Donaldson, Shoshana J. Wodak
2010 J jnl
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.
Database J. Biol. Databases Curation
Brian Turner, Sabry Razick, Andrei L. Turinsky, James Vlasblom, Edgard K. Crowdy, Emerson Cho, Kyle Morrison, Ian M. Donaldson, Shoshana J. Wodak
2009 J jnl
Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.
BMC Bioinform.
James Vlasblom, Shoshana J. Wodak
2008 J jnl
LigASite - a database of biologically relevant binding sites in proteins with known
Nucleic Acids Res.
Benoit H. Dessailly, Marc F. Lensink, Christine A. Orengo, Shoshana J. Wodak
2008 J jnl
Local coherence in genetic interaction patterns reveals prevalent functional versatility.
Bioinform.
Shuye Pu, Karen Ronen, James Vlasblom, Jack Greenblatt, Shoshana J. Wodak
2007 J jnl
Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets.
BMC Bioinform.
Guillaume Launay, Raul Mendez, Shoshana J. Wodak, Thomas Simonson
2007 J jnl
Relating destabilizing regions to known functional sites in proteins.
BMC Bioinform.
Benoit H. Dessailly, Marc F. Lensink, Shoshana J. Wodak
2006 J jnl
GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks.
Bioinform.
James Vlasblom, Samuel Wu, Shuye Pu, Mark Superina, Gina Liu, Chris Orsi, Shoshana J. Wodak
2005 J jnl
CYGD: the Comprehensive Yeast Genome Database.
Nucleic Acids Res.
Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Normann Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, José E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, Bruno André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes
2005 J jnl
Metabolic PathFinding: inferring relevant pathways in biochemical networks.
Nucleic Acids Res.
Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden
2004 J jnl
ACLAME: A CLAssification of Mobile genetic Elements.
Nucleic Acids Res.
Raphaël Leplae, Aline Hebrant, Shoshana J. Wodak, Ariane Toussaint
2004 J jnl
Combining pattern discovery and discriminant analysis to predict gene co-regulation.
Bioinform.
Nicolas Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden
2004 J jnl
The aMAZE LightBench: a web interface to a relational database of cellular processes.
Nucleic Acids Res.
Christian Lemer, Erick Antezana, Fabian Couche, Frédéric Fays, Xavier Santolaria, Rekin's Janky, Yves Deville, Jean Richelle, Shoshana J. Wodak
2003 — conf
An Overview of Data Models for the Analysis of Biochemical Pathways.
CMSB
Yves Deville, David R. Gilbert, Jacques van Helden, Shoshana J. Wodak
2003 J jnl
An overview of data models for the analysis of biochemical pathways.
Briefings Bioinform.
Yves Deville, David R. Gilbert, Jacques van Helden, Shoshana J. Wodak
2002 J jnl
Advanced pairwise structure alignments of proteins and analysis of conformational changes.
Bioinform.
Maria Elena Ochagavía, Jean Richelle, Shoshana J. Wodak
2001 J jnl
From Molecular Activities and Processes to Biological Function.
Briefings Bioinform.
Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew D. Eldridge, Shoshana J. Wodak
2000 — conf
Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data.
JOBIM
Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak
1999 — conf
Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database.
German Conference on Bioinformatics
Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew D. Eldridge, Kirill Degtyarenko, Shoshana J. Wodak
1997 — conf
Molecular Systematics in Three Dimensions.
German Conference on Bioinformatics
Shoshana J. Wodak
1995 A ed.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995
ISMB
Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak