Shoichi Ishida

14 papers Journal 14

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Extracting effective solutions hidden in large language models via generated comprehensive specialists: case studies in developing electronic devices. CoRR Hikari Tomita, Nobuhiro Nakamura, Shoichi Ishida, Toshio Kamiya, Kei Terayama
2025	J	`jnl`	GESim: ultrafast graph-based molecular similarity calculation via von Neumann graph entropy. J. Cheminformatics Hiroaki Shiokawa, Shoichi Ishida, Kei Terayama
2025	J	`jnl`	Large language models open new way of AI-assisted molecule design for chemists. J. Cheminformatics Shoichi Ishida, Tomohiro Sato, Teruki Honma, Kei Terayama
2025	J	`jnl`	Qcforever2: Advanced Automation of Quantum Chemistry Computations. J. Comput. Chem. Masato Sumita, Kei Terayama, Shoichi Ishida, Kensuke Suga, Shohei Saito, Koji Tsuda
2025	J	`jnl`	Visualizing fatigue mechanisms in non-communicable diseases: an integrative approach with multi-omics and machine learning. BMC Medical Informatics Decis. Mak. Yusuke Kobayashi, Naoki Fujiwara, Yuki Murakami, Shoichi Ishida, Sho Kinguchi, Tatsuya Haze, Kengo Azushima, Akira Fujiwara, Hiromichi Wakui, Masayoshi Sakakura, Kei Terayama, Nobuhito Hirawa, Tetsuo Isozaki, Hiroaki Yasuzaki, Hajime Takase, Yuichiro Yano, Kouichi Tamura
2024	J	`jnl`	Predicting condensate formation of protein and RNA under various environmental conditions. BMC Bioinform. Ka Yin Chin, Shoichi Ishida, Yukio Sasaki, Kei Terayama
2023	J	`jnl`	AI-driven molecular generation of not-patented pharmaceutical compounds using world open patent data. J. Cheminformatics Yugo Shimizu, Masateru Ohta, Shoichi Ishida, Kei Terayama, Masanori Osawa, Teruki Honma, Kazuyoshi Ikeda
2022	J	`jnl`	AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge. J. Chem. Inf. Model. Shoichi Ishida, Kei Terayama, Ryosuke Kojima, Kiyosei Takasu, Yasushi Okuno
2022	J	`jnl`	Selective Inhibitor Design for Kinase Homologs Using Multiobjective Monte Carlo Tree Search. J. Chem. Inf. Model. Tatsuya Yoshizawa, Shoichi Ishida, Tomohiro Sato, Masateru Ohta, Teruki Honma, Kei Terayama
2021	J	`jnl`	Complex network prediction using deep learning. CoRR Yoshihisa Tanaka, Ryosuke Kojima, Shoichi Ishida, Fumiyoshi Yamashita, Yasushi Okuno
2021	J	`jnl`	Extraction of protein dynamics information from cryo-EM maps using deep learning. Nat. Mach. Intell. Shigeyuki Matsumoto, Shoichi Ishida, Mitsugu Araki, Takayuki Kato, Kei Terayama, Yasushi Okuno
2020	J	`jnl`	CompRet: a comprehensive recommendation framework for chemical synthesis planning with algorithmic enumeration. J. Cheminformatics Ryosuke Shibukawa, Shoichi Ishida, Kazuki Yoshizoe, Kunihiro Wasa, Kiyosei Takasu, Yasushi Okuno, Kei Terayama, Koji Tsuda
2020	J	`jnl`	kGCN: a graph-based deep learning framework for chemical structures. J. Cheminformatics Ryosuke Kojima, Shoichi Ishida, Masateru Ohta, Hiroaki Iwata, Teruki Honma, Yasushi Okuno
2019	J	`jnl`	Prediction and Interpretable Visualization of Retrosynthetic Reactions Using Graph Convolutional Networks. J. Chem. Inf. Model. Shoichi Ishida, Kei Terayama, Ryosuke Kojima, Kiyosei Takasu, Yasushi Okuno