Shoba Ranganathan

70 papers C 1Journal 57Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Establishing the Asia & Pacific Bioinformatics Joint Congress: a historic milestone in regional bioinformatics collaboration.
Briefings Bioinform.
Asif M. Khan, Susumu Goto, Kenta Nakai, Limsoon Wong, Diane E. Kovats, Yuki Saito, Shinya Ikematsu, Yoshihiro Yamanishi, Nurul Salwanie Che Wahid, Harpreet Singh, Pradeep Eranti, Yi-Ping Phoebe Chen, Tae-Min Kim, Shinn-Ying Ho, Jessica Cara Mar, Wataru Iwasaki, Jayaraman Valadi, Prashanth Suravajhala, Christian Schönbach, Tin Wee Tan, Shoba Ranganathan, Kiyoko F. Aoki-Kinoshita
2021 J jnl
Mass spectrometry-based protein identification in proteomics - a review.
Briefings Bioinform.
Zainab Noor, Seong Beom Ahn, Mark S. Baker, Shoba Ranganathan, Abidali Mohamedali
2019 J jnl
Diverse dynamics features of novel protein kinase C (PKC) isozymes determine the selectivity of a fluorinated balanol analogue for PKCε.
BMC Bioinform.
Ari Hardianto, Varun Khanna, Fei Liu, Shoba Ranganathan
2019 — book
Encyclopedia of Bioinformatics and Computational Biology - Volume 1
Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach
2019 — book
Encyclopedia of Bioinformatics and Computational Biology - Volume 2
Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach
2019 — book
Encyclopedia of Bioinformatics and Computational Biology - Volume 3
Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach
2019 — ch.
Genome Databases and Browsers.
Encyclopedia of Bioinformatics and Computational Biology (2)
Dean Southwood, Shoba Ranganathan
2019 — ch.
Host-Pathogen Interactions.
Encyclopedia of Bioinformatics and Computational Biology (3)
Dean Southwood, Shoba Ranganathan
2019 — ch.
Identification of Proteins From Proteomic Analysis.
Encyclopedia of Bioinformatics and Computational Biology (3)
Zainab Noor, Abidali Mohamedali, Shoba Ranganathan
2019 — ch.
Preface.
Encyclopedia of Bioinformatics and Computational Biology (1)
Shoba Ranganathan
2019 — ch.
Protocol for Protein Structure Modelling.
Encyclopedia of Bioinformatics and Computational Biology (3)
Amara Jabeen, Abidali Mohamedali, Shoba Ranganathan
2019 — ch.
Quantification of Proteins From Proteomic Analysis.
Encyclopedia of Bioinformatics and Computational Biology (3)
Zainab Noor, Subash Adhikari, Shoba Ranganathan, Abidali Mohamedali
2019 — ch.
Rational Structure-Based Drug Design.
Encyclopedia of Bioinformatics and Computational Biology (2)
Varun Khanna, Shoba Ranganathan, Nikolai Petrovsky
2019 — ch.
Structure-Based Drug Design Workflow.
Encyclopedia of Bioinformatics and Computational Biology (3)
Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan
2019 J jnl
iSwathX: an interactive web-based application for extension of DIA peptide reference libraries.
Bioinform.
Zainab Noor, Jemma X. Wu, Dana Pascovici, Abidali Mohamedali, Mark P. Molloy, Mark S. Baker, Shoba Ranganathan
2018 J jnl
Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.
BMC Genom.
Xinrui Zhou, Jie Zheng, Fransiskus Xaverius Ivan, Rui Yin, Shoba Ranganathan, Vincent T. K. Chow, Chee-Keong Kwoh
2018 J jnl
Molecular Dynamics Pinpoint the Global Fluorine Effect in Balanoid Binding to PKCε and PKA.
J. Chem. Inf. Model.
Ari Hardianto, Fei Liu, Shoba Ranganathan
2017 J jnl
Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases.
BMC Bioinform.
Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan
2016 J jnl
Bioinformatics and systems biology research update from the 15th International Conference on Bioinformatics (InCoB2016).
BMC Bioinform.
Christian Schönbach, Chandra Verma, Peter J. Bond, Shoba Ranganathan
2015 J jnl
Discrete structural features among interface residue-level classes.
BMC Bioinform.
Gopichandran Sowmya, Shoba Ranganathan
2015 J jnl
GIW and InCoB are advancing bioinformatics in the Asia-Pacific.
BMC Bioinform.
Christian Schönbach, Paul Horton, Siu-Ming Yiu, Tin Wee Tan, Shoba Ranganathan
2015 J jnl
Introduction to selected papers from GIW/InCoB 2015.
J. Bioinform. Comput. Biol.
Paul Horton, Christian Schönbach, Shoba Ranganathan, Siu-Ming Yiu
2014 J jnl
InCoB2014: Systems Biology update from the Asia-Pacific.
BMC Syst. Biol.
Shoba Ranganathan, Tin Wee Tan, Christian Schönbach
2014 J jnl
InCoB2014: bioinformatics to tackle the data to knowledge challenge.
BMC Bioinform.
Shoba Ranganathan, Tin Wee Tan, Christian Schönbach
2013 J jnl
APBioNet - Transforming Bioinformatics in the Asia-Pacific Region.
PLoS Comput. Biol.
Asif M. Khan, Tin Wee Tan, Christian Schönbach, Shoba Ranganathan
2013 J jnl
Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework.
BMC Syst. Biol.
Gaurav Kumar, Edmond J. Breen, Shoba Ranganathan
2013 J jnl
InCoB2013 introduces Systems Biology as a major conference theme.
BMC Syst. Biol.
Christian Schönbach, Bairong Shen, Tin Wee Tan, Shoba Ranganathan
2012 J jnl
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.
BMC Bioinform.
Christian Schönbach, Sissades Tongsima, Jonathan H. Chan, Vladimir Brusic, Tin Wee Tan, Shoba Ranganathan
2012 J jnl
TranSeqAnnotator: large-scale analysis of transcriptomic data.
BMC Bioinform.
Ranjeeta Menon, Gagan Garg, Robin B. Gasser, Shoba Ranganathan
2011 J jnl
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance.
BMC Bioinform.
Varun Khanna, Shoba Ranganathan
2011 J jnl
MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures.
Bioinform.
Javed Mohammed Khan, Harish Reddy Cheruku, Joo Chuan Tong, Shoba Ranganathan
2011 J jnl
Structural diversity of biologically interesting datasets: a scaffold analysis approach.
J. Cheminformatics
Varun Khanna, Shoba Ranganathan
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Nucleic Acids Res.
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2011 J jnl
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.
BMC Bioinform.
Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan
2010 — conf
Biomarker information extraction tool (BIET) development using natural language processing and machine learning.
ICWET
Md. Tawhidul Islam, M. Shaikh, Abhaya C. Nayak, Shoba Ranganathan
2010 J jnl
InCoB2010 - 9
BMC Bioinform.
Christian Schönbach, Kenta Nakai, Tin Wee Tan, Shoba Ranganathan
2010 J jnl
Network analysis of human protein location.
BMC Bioinform.
Gaurav Kumar, Shoba Ranganathan
2009 J jnl
A comprehensive assessment of N-terminal signal peptides prediction methods.
BMC Bioinform.
Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan
2009 J jnl
Physicochemical property space distribution among human metabolites, drugs and toxins.
BMC Bioinform.
Varun Khanna, Shoba Ranganathan
2009 J jnl
Towards a career in bioinformatics.
BMC Bioinform.
Shoba Ranganathan
2008 J jnl
Bioinformatics research in the Asia Pacific: a 2007 update.
BMC Bioinform.
Shoba Ranganathan, Michael Gribskov, Tin Wee Tan
2008 J jnl
CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge.
BMC Bioinform.
Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen, Shoba Ranganathan
2008 J jnl
Critical technologies for bioinformatics.
Briefings Bioinform.
Vladimir Brusic, Shoba Ranganathan
2008 J jnl
Emerging strengths in Asia Pacific bioinformatics.
BMC Bioinform.
Shoba Ranganathan, Wen-Lian Hsu, Ueng-Cheng Yang, Tin Wee Tan
2008 J jnl
Flanking signal and mature peptide residues influence signal peptide cleavage.
BMC Bioinform.
Khar Heng Choo, Shoba Ranganathan
2008 J jnl
Modeling
BMC Bioinform.
Khar Heng Choo, Joo Chuan Tong, Shoba Ranganathan
2008 J jnl
Tandem duplication, circular permutation, molecular adaptation: how
BMC Bioinform.
Lesheng Kong, Shoba Ranganathan
2007 J jnl
A Workflow for Mutation Extraction and Structure Annotation.
J. Bioinform. Comput. Biol.
Kanagasabai Rajaraman, Khar Heng Choo, Shoba Ranganathan, Christopher J. O. Baker
2007 J jnl
A hitchhiker's guide to expressed sequence tag (EST) analysis.
Briefings Bioinform.
Shivashankar H. Nagaraj, Robin B. Gasser, Shoba Ranganathan
2007 J jnl
CASVM: web server for SVM-based prediction of caspase substrates cleavage sites.
Bioinform.
Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan
2007 J jnl
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
Nucleic Acids Res.
Shivashankar H. Nagaraj, Nandan Deshpande, Robin B. Gasser, Shoba Ranganathan
2007 J jnl
Methods and protocols for prediction of immunogenic epitopes.
Briefings Bioinform.
Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan
2006 J jnl
ASGS: an alternative splicing graph web service.
Nucleic Acids Res.
Durgaprasad Bollina, Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
2006 J jnl
Establishing bioinformatics research in the Asia Pacific.
BMC Bioinform.
Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan
2006 J jnl
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI.
Nucleic Acids Res.
Johann Lenffer, Frank W. Nicholas, Kao Castle, Arjun Rao, Stefan Gregory, Michael Poidinger, Matthew D. Mailman, Shoba Ranganathan
2006 J jnl
Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides.
Bioinform.
Joo Chuan Tong, Guanglan Zhang, Tin Wee Tan, J. Thomas August, Vladimir Brusic, Shoba Ranganathan
2006 J jnl
Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris.
BMC Bioinform.
Joo Chuan Tong, Tin Wee Tan, Animesh A. Sinha, Shoba Ranganathan
2006 J jnl
SVM-based prediction of caspase substrate cleavage sites.
BMC Bioinform.
Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan
2005 J jnl
Bioinformatics Education - Perspectives and Challenges.
PLoS Comput. Biol.
Shoba Ranganathan
2005 C conf
MVC Architecture in Bioinformatics web applications and its Java implementation.
iiWAS
Durgaprasad Bollina, Bernett T. K. Lee, Shoba Ranganathan
2005 J jnl
SPdb - a signal peptide database.
BMC Bioinform.
Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan
2004 J jnl
DEDB: a database of
BMC Bioinform.
Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
2004 J jnl
Delineation of modular proteins: Domain boundary prediction from sequence information.
Briefings Bioinform.
Lesheng Kong, Shoba Ranganathan
2004 J jnl
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins.
Nucleic Acids Res.
Lesheng Kong, Bernett Teck Kwong Lee, Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan
2004 J jnl
Xpro: database of eukaryotic protein-encoding genes.
Nucleic Acids Res.
Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, Shoba Ranganathan
2003 J jnl
MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences.
Nucleic Acids Res.
Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
2003 J jnl
MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules.
Bioinform.
Kunde Ramamoorthy Govindarajan, Pandjassarame Kangueane, Tin Wee Tan, Shoba Ranganathan
2003 J jnl
XdomView: protein domain and exon position visualization.
Bioinform.
Vivek Gopalan, Tin Wee Tan, Shoba Ranganathan
2001 J jnl
Challenges for Intelligent Systems in Biology.
IEEE Intell. Syst.
Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan