Shizuka Uchida

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
CrohnDB: A Web Database for Expression Profiling of Protein-Coding and Long Non-Coding RNA Genes in Crohn Disease.
Comput.
Rebecca Distefano, Mirolyuba Ilieva, Jens Hedelund Madsen, Shizuka Uchida
2018 J jnl
DRETools: A tool-suite for differential RNA editing detection.
F1000Research
Tyler Weirick, Patrick J. Trainor, Eric C. Rouchka, Andrew P. DeFilippis, Shizuka Uchida
2018 J jnl
Increasing workflow development speed and reproducibility with Vectools.
F1000Research
Tyler Weirick, Raphael Rene Müller, Shizuka Uchida
2018 J jnl
Logic programming to infer complex RNA expression patterns from RNA-seq data.
Briefings Bioinform.
Tyler Weirick, Giuseppe Militello, Yuliya Ponomareva, David John, Claudia Döring, Stefanie Dimmeler, Shizuka Uchida
2017 J jnl
RNAEditor: easy detection of RNA editing events and the introduction of editing islands.
Briefings Bioinform.
David John, Tyler Weirick, Stefanie Dimmeler, Shizuka Uchida
2017 J jnl
Resolving the problem of multiple accessions of the same transcript deposited across various public databases.
Briefings Bioinform.
Tyler Weirick, David John, Shizuka Uchida
2017 J jnl
Screening and validation of lncRNAs and circRNAs as miRNA sponges.
Briefings Bioinform.
Giuseppe Militello, Tyler Weirick, David John, Claudia Döring, Stefanie Dimmeler, Shizuka Uchida
2016 J jnl
The identification and characterization of novel transcripts from RNA-seq data.
Briefings Bioinform.
Tyler Weirick, Giuseppe Militello, Raphael Rene Müller, David John, Stefanie Dimmeler, Shizuka Uchida
2015 J jnl
C-It-Loci: a knowledge database for tissue-enriched loci.
Bioinform.
Tyler Weirick, David John, Stefanie Dimmeler, Shizuka Uchida
2010 J jnl
C-It: a knowledge database for tissue-enriched genes.
Bioinform.
Pascal Gellert, Katharina Jenniches, Thomas Braun, Shizuka Uchida
2009 J jnl
Exon Array Analyzer: a web interface for Affymetrix exon array analysis.
Bioinform.
Pascal Gellert, Shizuka Uchida, Thomas Braun