Shiwei Sun

58 papers A* 1B 1Journal 41Unranked 15
YearRankTypeTitle / Venue / Authors
2026 J jnl
GGFlow: A Graph Flow Matching Method with Efficient Optimal Transport.
Trans. Mach. Learn. Res.
Xiaoyang Hou, Tian Zhu, Milong Ren, Dongbo Bu, Xin Gao, Chunming Zhang, Shiwei Sun
2025 — conf
A Multimodal Approach to Depression Detection from Social Media Data.
PACIS
Mingrui Tang, Dongsong Zhang, Zhu Zhang, Shiwei Sun, Zhijun Yan, Tianmei Wang
2025 J jnl
A Novel Approach for Locating Point Sources in a Diffusive Medium.
SIAM J. Appl. Math.
Shiwei Sun, Haibing Wang
2025 J jnl
The Learned Range Test Method for the Inverse Inclusion Problem.
SIAM J. Appl. Math.
Shiwei Sun, Giovanni S. Alberti
2024 J jnl
DMSS: An Attention-Based Deep Learning Model for High-Quality Mass Spectrometry Prediction.
Big Data Min. Anal.
Yihui Ren, Yu Wang, Wenkai Han, Yikang Huang, Xiaoyang Hou, Chunming Zhang, Dongbo Bu, Xin Gao, Shiwei Sun
2024 — conf
Deep Representation Learning for Electron Ionization Mass Spectra Retrieval.
BIBM
Shibo Liu, Xuan Zhang, Anlei Jiao, Shiwei Sun, Longyang Dian, Xuefeng Cui
2024 J jnl
Exploring Trial-and-Error in Deep Learning: Initial Application to Isotope Detection in Mass Spectrometry.
Big Data Min. Anal.
Qihong Jiao, Yuxiao Wang, Yongshuai Wang, Shiwei Sun, Xuefeng Cui
2024 — conf
How to Train Your Neural Network for Molecular Structure Generation from Mass Spectra?
BIBM
Kai Zhao, Yanmin Liu, Longyang Dian, Shiwei Sun, Xuefeng Cui
2024 J jnl
Improving Molecular Graph Generation with Flow Matching and Optimal Transport.
CoRR
Xiaoyang Hou, Tian Zhu, Milong Ren, Dongbo Bu, Xin Gao, Chunming Zhang, Shiwei Sun
2024 J jnl
The learned range test method for the inverse inclusion problem.
CoRR
Shiwei Sun, Giovanni S. Alberti
2023 J jnl
Accurate and efficient protein sequence design through learning concise local environment of residues.
Bioinform.
Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu
2023 J jnl
EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction.
Bioinform.
Xiaoyang Hou, Yu Wang, Dongbo Bu, Yaojun Wang, Shiwei Sun
2023 — conf
Integrative Drug Discovery Platform: A Modular Approach for Efficient and Automated Virtual Screening.
BIBM
Tianci Li, Lulu Xie, Zhonghai Zhang, Xu Li, Bo Duan, Gang Niu, Shiwei Sun, Fa Zhang, Runting Zhang, Guangming Tan, Chunming Zhang
2023 — conf
Learned Fingerprint Embedding for Large-Scale Peptide Mass Spectra Retrieval.
BIBM
Yongshuai Wang, Xiaojun Cai, Defeng Li, Shiwei Sun, Cheng Chen, Xuefeng Cui
2023 J jnl
Numerical studies of domain sampling methods for inverse boundary value problems by one measurement.
J. Comput. Phys.
Shiwei Sun, Gen Nakamura, Haibing Wang
2023 J jnl
Revolutionizing Antibody Discovery: An Innovative AI Model for Generating Robust Libraries.
Genom. Proteom. Bioinform.
Yaojun Wang, Shiwei Sun
2023 J jnl
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tiansu Gong, Fusong Ju, Shiwei Sun, Dongbo Bu
2022 A* conf
Automated Patching for Unreproducible Builds.
ICSE
Zhilei Ren, Shiwei Sun, Jifeng Xuan, Xiaochen Li, Zhide Zhou, He Jiang
2022 — conf
More User Engagement in Online Community: Effects of Posting and Replying Behaviors on Detection of Depression.
PACIS
Junwei Kuang, Zhijun Yan, Shiwei Sun
2022 J jnl
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
J. Comput. Biol.
Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu
2022 J jnl
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction.
Bioinform.
Fusong Ju, Jianwei Zhu, Qi Zhang, Guozheng Wei, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2022 J jnl
When Job Candidates Experience Social Media Privacy Violations: A Cross-Culture Study.
J. Glob. Inf. Manag.
Shiwei Sun, John R. Drake, Dianne J. Hall
2021 J jnl
FALCON2: a web server for high-quality prediction of protein tertiary structures.
BMC Bioinform.
Lupeng Kong, Fusong Ju, Haicang Zhang, Shiwei Sun, Dongbo Bu
2021 J jnl
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph.
BMC Bioinform.
Bin Huang, Guozheng Wei, Bing Wang, Fusong Ju, Yi Zhong, Zhuozheng Shi, Shiwei Sun, Dongbo Bu
2021 — conf
Glycan immunogenicity prediction based on Graph neural network.
BIBM
Yu Wang, Hui Wang, Meijie Hou, Yaojun Wang, Dongbo Bu, Chunming Zhang, Chuncui Huang, Shiwei Sun
2021 — conf
SASA-Net: A spatial-aware self-attention mechanism for building protein 3D structure directly from inter-residue distances.
BIBM
Tiansu Gong, Fusong Ju, Shiwei Sun, Dongbo Bu
2021 J jnl
SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
J. Comput. Biol.
Wenyan Gu, Aizhong Zhou, Lusheng Wang, Shiwei Sun, Xuefeng Cui, Daming Zhu
2020 J jnl
ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
BMC Bioinform.
Qi Zhang, Jianwei Zhu, Fusong Ju, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2020 — conf
Mut-Detecter: An EGFR activating mutation type classification method with a deep convolutional neural network.
BIBM
Yaojun Wang, Xinyu Hua, Yu Wang, Chunming Zhang, Dongbo Bu, Shiwei Sun, Xingce Wang
2020 — conf
SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data.
ISBRA
Wenyan Gu, Aizhong Zhou, Lusheng Wang, Shiwei Sun, Xuefeng Cui, Daming Zhu
2019 J jnl
Best-first search guided multistage mass spectrometry-based glycan identification.
Bioinform.
Yaojun Wang, Dongbo Bu, Chuncui Huang, Hui Wang, Jinyu Zhou, Junchuan Dong, Weiyi Pan, Jingwei Zhang, Qi Zhang, Yan Li, Shiwei Sun
2019 — conf
Cerebrovascular Segmentation Algorithm Based on Focused Multi-Gaussians Model and Weighted 3D Markov Random Field.
BIBM
Zhilong Lv, Rui Yan, Xinyu Liu, Zhongke Wu, Yicheng Zhu, Shiwei Sun, Fa Zhang, Xingce Wang, Xiaohua Wan
2019 J jnl
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling.
BMC Bioinform.
Chao Wang, Yi Wei, Haicang Zhang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform.
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
De novo glycan structural identification from mass spectra using tree merging strategy.
Comput. Biol. Chem.
Fusong Ju, Jingwei Zhang, Dongbo Bu, Yan Li, Jinyu Zhou, Hui Wang, Yaojun Wang, Chuncui Huang, Shiwei Sun
2019 J jnl
Optimizing the Electronic Health Records Through Big Data Analytics: A Knowledge-Based View.
IEEE Access
Caifeng Zhang, Rui Ma, Shiwei Sun, Yujie Li, Yichuan Wang, Zhijun Yan
2019 J jnl
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform.
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
Seq-SetNet: Exploring Sequence Sets for Inferring Structures.
CoRR
Fusong Ju, Jianwei Zhu, Guozheng Wei, Qi Zhang, Shiwei Sun, Dongbo Bu
2018 — conf
Fiducial marker detection via deep learning approach for electron tomography.
BIBM
Yu Hao, Renmin Han, Xiaohua Wan, Fa Zhang, Shiwei Sun
2018 J jnl
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
CoRR
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Shiwei Sun, Yujuan Gao, Ziwei Xie, Minghua Deng, Wei-Mou Zheng, Dongbo Bu
2018 J jnl
Understanding the Factors Affecting the Organizational Adoption of Big Data.
J. Comput. Inf. Syst.
Shiwei Sun, Casey G. Cegielski, Lin Jia, Dianne J. Hall
2017 J jnl
DeepPPI: Boosting Prediction of Protein-Protein Interactions with Deep Neural Networks.
J. Chem. Inf. Model.
Xiuquan Du, Shiwei Sun, Changlin Hu, Yu Yao, Yuan-Ting Yan, Yanping Zhang
2017 J jnl
Improving prediction of burial state of residues by exploiting correlation among residues.
BMC Bioinform.
Hai'e Gong, Haicang Zhang, Jianwei Zhu, Chao Wang, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2017 J jnl
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.
Bioinform.
Jianwei Zhu, Haicang Zhang, Shuai Cheng Li, Chao Wang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2016 J jnl
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Bioinform.
Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu
2016 — conf
Recovery Satisfaction, attitudinal Loyalty and Behavioural Loyalty: the Moderating Role of Perceived Risk.
PACIS
Gaoshan Wang, Shiwei Sun, Liang Ma, Huixia Han
2016 J jnl
The applications of social commerce constructs.
Int. J. Inf. Manag.
Mohana Shanmugam, Shiwei Sun, Asra Amidi, Farzad Khani, Fariborz Khani
2015 J jnl
Condensing Raman spectrum for single-cell phenotype analysis.
BMC Bioinform.
Shiwei Sun, Xuetao Wang, Xin Gao, Lihui Ren, Xiaoquan Su, Dongbo Bu, Kang Ning
2015 — conf
Job Applicants' Information Privacy-Protective Response: Exploring the Roles of Technology Readiness and Trust.
AMCIS
John R. Drake, Dianne J. Hall, Shiwei Sun, Yichuan Wang
2015 J jnl
OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction.
BMC Bioinform.
Yaojun Wang, Fei Yang, Peng Wu, Dongbo Bu, Shiwei Sun
2015 J jnl
User ratings analysis in social networks through a hypernetwork method.
Expert Syst. Appl.
Qi Suo, Shiwei Sun, Nick Hajli, Peter E. D. Love
2014 — conf
The Effect of Technology Usage Habits on Consumers' Intention to Continue Use Mobile Payments.
AMCIS
Lin Jia, Dianne J. Hall, Shiwei Sun
2011 J jnl
PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum.
BMC Bioinform.
Yantao Qiao, Hong Zhang, Dongbo Bu, Shiwei Sun
2011 J jnl
ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity.
BMC Bioinform.
Shenghui Zhang, Yaojun Wang, Dongbo Bu, Hong Zhang, Shiwei Sun
2008 B conf
A Fragmentation Event Model for Peptide Identification by Mass Spectrometry.
RECOMB
Yu Lin, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu
2007 J jnl
An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry.
J. Bioinform. Comput. Biol.
Chungong Yu, Yu Lin, Shiwei Sun, Jinjin Cai, Jingfen Zhang, Dongbo Bu, Zhuo Zhang, Runsheng Chen
2006 J jnl
A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.
BMC Bioinform.
Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang, Xiaofei Liu, Chungong Yu, Dongbo Bu, Runsheng Chen
2006 J jnl
Phylophenetic properties of metabolic pathway topologies as revealed by global analysis.
BMC Bioinform.
Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen