Shireen Y. Elhabian

155 papers A* 5A 2B 9Journal 70Unranked 66
YearRankTypeTitle / Venue / Authors
2026 — ed.
Shape in Medical Imaging - International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings
ShapeMI@MICCAI
Christian Wachinger, Gijs Luijten, Shireen Y. Elhabian, Karthik Gopinath, Jan Egger
2026 J jnl
Unrolled Reconstruction with Integrated Super-Resolution for Accelerated 3D LGE MRI.
CoRR
Md. Hasibul Husain Hisham, Shireen Y. Elhabian, Ganesh Adluru, Jason Mendes, Andrew Arai, Eugene G. Kholmovski, Ravi Ranjan, Edward DiBella
2025 J jnl
A framework for three-dimensional statistical shape modeling of the proximal femur in Legg-Calvé-Perthes disease.
Int. J. Comput. Assist. Radiol. Surg.
Luke G. Johnson, Joseph D. Mozingo, Penny R. Atkins, Seaton Schwab, Alan Morris, Shireen Y. Elhabian, David R. Wilson, Harry K. W. Kim, Andrew E. Anderson
2025 J jnl
Adaptive Particle-Based Shape Modeling for Anatomical Surface Correspondence.
CoRR
Hong Xu, Shireen Y. Elhabian
2025 J jnl
BoundarySeg:An Embarrassingly Simple Method To Boost Medical Image Segmentation Performance for Low Data Regimes.
CoRR
Tushar Kataria, Shireen Y. Elhabian
2025 J jnl
Building Trust in Virtual Immunohistochemistry: Automated Assessment of Image Quality.
CoRR
Tushar Kataria, Shikha Dubey, Mary Bronner, Jolanta Jedrzkiewicz, Ben J. Brintz, Shireen Y. Elhabian, Beatrice S. Knudsen
2025 A conf
EFFICIENTMORPH: Parameter-Efficient Transformer-Based Architecture for 3D Image Registration.
WACV
Abu Zahid Bin Aziz, Mokshagna Sai Teja Karanam, Tushar Kataria, Shireen Y. Elhabian
2025 J jnl
ImplicitStainer: Data-Efficient Medical Image Translation for Virtual Antibody-based Tissue Staining Using Local Implicit Functions.
CoRR
Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian
2025 — conf
LEDA: Log-Euclidean Diffeomorphism Autoencoder for Efficient Statistical Analysis of Diffeomorphisms.
IPMI (2)
Krithika Iyer, Shireen Y. Elhabian, Sarang C. Joshi
2025 J jnl
MORPH-LER: Log-Euclidean Regularization for Population-Aware Image Registration.
CoRR
Mokshagna Sai Teja Karanam, Krithika Iyer, Sarang C. Joshi, Shireen Y. Elhabian
2025 J jnl
Mesh2SSM++: A Probabilistic Framework for Unsupervised Learning of Statistical Shape Model of Anatomies from Surface Meshes.
CoRR
Krithika Iyer, Mokshagna Sai Teja Karanam, Shireen Y. Elhabian
2025 — ed.
Shape in Medical Imaging - International Workshop, ShapeMI 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 6, 2024, Proceedings
ShapeMI@MICCAI
Christian Wachinger, Beatriz Paniagua, Shireen Y. Elhabian, Gijs Luijten, Jan Egger
2024 J jnl
DeepSSM: A blueprint for image-to-shape deep learning models.
Medical Image Anal.
Riddhish Bhalodia, Shireen Y. Elhabian, Jadie Adams, Wenzheng Tao, Ladislav Kavan, Ross T. Whitaker
2024 — conf
Deformable Vertebra 3D/2D Registration from Biplanar X-Rays Using Particle-Based Shape Modelling.
ShapeMI@MICCAI
Benjamin Aubert, Nawazish Khan, Francis Toupin, Manuela Pacheco, Alan Morris, Shireen Y. Elhabian, Kongbin Kang
2024 J jnl
EfficientMorph: Parameter-Efficient Transformer-Based Architecture for 3D Image Registration.
CoRR
Abu Zahid Bin Aziz, Mokshagna Sai Teja Karanam, Tushar Kataria, Shireen Y. Elhabian
2024 — conf
Estimation and Analysis of Slice Propagation Uncertainty in 3D Anatomy Segmentation.
MICCAI (10)
Rachaell Nihalaani, Tushar Kataria, Jadie Adams, Shireen Y. Elhabian
2024 J jnl
Estimation and Analysis of Slice Propagation Uncertainty in 3D Anatomy Segmentation.
CoRR
Rachaell Nihalaani, Tushar Kataria, Jadie Adams, Shireen Y. Elhabian
2024 — conf
HAMIL-QA: Hierarchical Approach to Multiple Instance Learning for Atrial LGE MRI Quality Assessment.
MICCAI (1)
K. M. Arefeen Sultan, Md. Hasibul Husain Hisham, Benjamin A. Orkild, Alan Morris, Eugene G. Kholmovski, Erik Bieging, Eugene Kwan, Ravi Ranjan, Edward V. R. DiBella, Shireen Y. Elhabian
2024 J jnl
HAMIL-QA: Hierarchical Approach to Multiple Instance Learning for Atrial LGE MRI Quality Assessment.
CoRR
K. M. Arefeen Sultan, Md. Hasibul Husain Hisham, Benjamin A. Orkild, Alan Morris, Eugene G. Kholmovski, Erik Bieging, Eugene Kwan, Ravi Ranjan, Edward V. R. DiBella, Shireen Y. Elhabian
2024 J jnl
LEDA: Log-Euclidean Diffeomorphic Autoencoder for Efficient Statistical Analysis of Diffeomorphism.
CoRR
Krithika Iyer, Shireen Y. Elhabian, Sarang C. Joshi
2024 — conf
MASSM: An End-to-End Deep Learning Framework for Multi Anatomy Statistical Shape Modeling Directly From Images.
ShapeMI@MICCAI
Janmesh Ukey, Tushar Kataria, Shireen Y. Elhabian
2024 J jnl
MASSM: An End-to-End Deep Learning Framework for Multi-Anatomy Statistical Shape Modeling Directly From Images.
CoRR
Janmesh Ukey, Tushar Kataria, Shireen Y. Elhabian
2024 — conf
Optimization-Driven Statistical Models of Anatomies Using Radial Basis Function Shape Representation.
ISBI
Hong Xu, Shireen Y. Elhabian
2024 J jnl
Optimization-Driven Statistical Models of Anatomies using Radial Basis Function Shape Representation.
CoRR
Hong Xu, Shireen Y. Elhabian
2024 J jnl
Particle-Based Shape Modeling for Arbitrary Regions-of-Interest.
CoRR
Hong Xu, Alan Morris, Shireen Y. Elhabian
2024 J jnl
Point2SSM++: Self-Supervised Learning of Anatomical Shape Models from Point Clouds.
CoRR
Jadie Adams, Shireen Y. Elhabian
2024 A* conf
Point2SSM: Learning Morphological Variations of Anatomies from Point Clouds.
ICLR
Jadie Adams, Shireen Y. Elhabian
2024 — conf
Probabilistic 3D Correspondence Prediction from Sparse Unsegmented Images.
MLMI@MICCAI (2)
Krithika Iyer, Shireen Y. Elhabian
2024 J jnl
Probabilistic 3D Correspondence Prediction from Sparse Unsegmented Images.
CoRR
Krithika Iyer, Shireen Y. Elhabian
2024 — conf
SCorP: Statistics-Informed Dense Correspondence Prediction Directly from Unsegmented Medical Images.
MIUA (1)
Krithika Iyer, Jadie Adams, Shireen Y. Elhabian
2024 J jnl
SCorP: Statistics-Informed Dense Correspondence Prediction Directly from Unsegmented Medical Images.
CoRR
Krithika Iyer, Jadie Adams, Shireen Y. Elhabian
2024 J jnl
StainDiffuser: MultiTask Dual Diffusion Model for Virtual Staining.
CoRR
Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian
2024 — conf
Unsupervised Domain Adaptation for Semantic Segmentation Under Target Data Scarcity.
ISBI
Tushar Kataria, Beatrice S. Knudsen, Shireen Y. Elhabian
2024 — conf
VIMs: Virtual Immunohistochemistry Multiplex Staining via Text-to-Stain Diffusion Trained on Uniplex Stains.
MLMI@MICCAI (1)
Shikha Dubey, Yosep Chong, Beatrice Knudsen, Shireen Y. Elhabian
2024 J jnl
VIMs: Virtual Immunohistochemistry Multiplex staining via Text-to-Stain Diffusion Trained on Uniplex Stains.
CoRR
Shikha Dubey, Yosep Chong, Beatrice Knudsen, Shireen Y. Elhabian
2024 J jnl
Weakly SSM : On the Viability of Weakly Supervised Segmentations for Statistical Shape Modeling.
CoRR
Janmesh Ukey, Tushar Kataria, Shireen Y. Elhabian
2024 — conf
Weakly Supervised Bayesian Shape Modeling from Unsegmented Medical Images.
ShapeMI@MICCAI
Jadie Adams, Krithika Iyer, Shireen Y. Elhabian
2024 J jnl
Weakly Supervised Bayesian Shape Modeling from Unsegmented Medical Images.
CoRR
Jadie Adams, Krithika Iyer, Shireen Y. Elhabian
2023 J jnl
ADASSM: Adversarial Data Augmentation in Statistical Shape Models From Images.
CoRR
Mokshagna Sai Teja Karanam, Tushar Kataria, Shireen Y. Elhabian
2023 — conf
ADASSM: Adversarial Data Augmentation in Statistical Shape Models from Images.
ShapeMI@MICCAI
Mokshagna Sai Teja Karanam, Tushar Kataria, Krithika Iyer, Shireen Y. Elhabian
2023 — conf
An NSF REU Site Based on Trust and Reproducibility of Intelligent Computation: Experience Report.
SC Workshops
Mary W. Hall, Ganesh Gopalakrishnan, Eric Eide, Johanna Cohoon, Jeff M. Phillips, Mu Zhang, Shireen Y. Elhabian, Aditya Bhaskara, Harvey Dam, Artem Yadrov, Tushar Kataria, Amir Mohammad Tavakkoli, Sameeran Joshi, Mokshagna Sai Teja Karanam
2023 — conf
Benchmarking Scalable Epistemic Uncertainty Quantification in Organ Segmentation.
UNSURE@MICCAI
Jadie Adams, Shireen Y. Elhabian
2023 J jnl
Benchmarking Scalable Epistemic Uncertainty Quantification in Organ Segmentation.
CoRR
Jadie Adams, Shireen Y. Elhabian
2023 — conf
Can Point Cloud Networks Learn Statistical Shape Models of Anatomies?
MICCAI (1)
Jadie Adams, Shireen Y. Elhabian
2023 J jnl
Can point cloud networks learn statistical shape models of anatomies?
CoRR
Jadie Adams, Shireen Y. Elhabian
2023 — conf
Fully Bayesian VIB-DeepSSM.
MICCAI (3)
Jadie Adams, Shireen Y. Elhabian
2023 J jnl
Fully Bayesian VIB-DeepSSM.
CoRR
Jadie Adams, Shireen Y. Elhabian
2023 — conf
Image2SSM: Localization-aware Deep Learning Framework for Statistical Shape Modeling Directly from Images.
MIDL
Janmesh Ukey, Shireen Y. Elhabian
2023 — conf
Image2SSM: Reimagining Statistical Shape Models from Images with Radial Basis Functions.
MICCAI (1)
Hong Xu, Shireen Y. Elhabian
2023 J jnl
Image2SSM: Reimagining Statistical Shape Models from Images with Radial Basis Functions.
CoRR
Hong Xu, Shireen Y. Elhabian
2023 — conf
Mesh2SSM: From Surface Meshes to Statistical Shape Models of Anatomy.
MICCAI (1)
Krithika Iyer, Shireen Y. Elhabian
2023 J jnl
Mesh2SSM: From Surface Meshes to Statistical Shape Models of Anatomy.
CoRR
Krithika Iyer, Shireen Y. Elhabian
2023 — conf
Particle-Based Shape Modeling for Arbitrary Regions-of-Interest.
ShapeMI@MICCAI
Hong Xu, Alan Morris, Shireen Y. Elhabian
2023 J jnl
Point2SSM: Learning Morphological Variations of Anatomies from Point Cloud.
CoRR
Jadie Adams, Shireen Y. Elhabian
2023 — conf
Progressive DeepSSM: Training Methodology for Image-To-Shape Deep Models.
ShapeMI@MICCAI
Abu Zahid Bin Aziz, Jadie Adams, Shireen Y. Elhabian
2023 J jnl
Progressive DeepSSM: Training Methodology for Image-To-Shape Deep Models.
CoRR
Abu Zahid Bin Aziz, Jadie Adams, Shireen Y. Elhabian
2023 — ed.
Shape in Medical Imaging - International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings
ShapeMI@MICCAI
Christian Wachinger, Beatriz Paniagua, Shireen Y. Elhabian, Jianning Li, Jan Egger
2023 — conf
Structural Cycle GAN for Virtual Immunohistochemistry Staining of Gland Markers in the Colon.
MLMI@MICCAI (2)
Shikha Dubey, Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian
2023 J jnl
Structural Cycle GAN for Virtual Immunohistochemistry Staining of Gland Markers in the Colon.
CoRR
Shikha Dubey, Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian
2023 — conf
To Pretrain or Not to Pretrain? A Case Study of Domain-Specific Pretraining for Semantic Segmentation in Histopathology.
MILLanD@MICCAI
Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian
2023 J jnl
To pretrain or not to pretrain? A case study of domain-specific pretraining for semantic segmentation in histopathology.
CoRR
Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian
2023 — conf
Two-Stage Deep Learning Framework for Quality Assessment of Left Atrial Late Gadolinium Enhanced MRI Images.
STACOM@MICCAI
K. M. Arefeen Sultan, Benjamin A. Orkild, Alan Morris, Eugene G. Kholmovski, Erik Bieging, Eugene Kwan, Ravi Ranjan, Edward V. R. Di Bella, Shireen Y. Elhabian
2023 J jnl
Two-Stage Deep Learning Framework for Quality Assessment of Left Atrial Late Gadolinium Enhanced MRI Images.
CoRR
K. M. Arefeen Sultan, Benjamin A. Orkild, Alan Morris, Eugene G. Kholmovski, Erik Bieging, Eugene Kwan, Ravi Ranjan, Edward DiBella, Shireen Y. Elhabian
2023 J jnl
Unsupervised Domain Adaptation for Semantic Segmentation via Feature-space Density Matching.
CoRR
Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian
2022 J jnl
Benchmarking off-the-shelf statistical shape modeling tools in clinical applications.
Medical Image Anal.
Anupama Goparaju, Krithika Iyer, Alexandre Bône, Nan Hu, Heath B. Henninger, Andrew E. Anderson, Stanley Durrleman, Matthijs Jacxsens, Alan Morris, Ibolya Csecs, Nassir Marrouche, Shireen Y. Elhabian
2022 — conf
From Images to Probabilistic Anatomical Shapes: A Deep Variational Bottleneck Approach.
MICCAI (2)
Jadie Adams, Shireen Y. Elhabian
2022 J jnl
From Images to Probabilistic Anatomical Shapes: A Deep Variational Bottleneck Approach.
CoRR
Jadie Adams, Shireen Y. Elhabian
2022 J jnl
GENs: generative encoding networks.
Mach. Learn.
Surojit Saha, Shireen Y. Elhabian, Ross T. Whitaker
2022 J jnl
Learning Population-level Shape Statistics and Anatomy Segmentation From Images: A Joint Deep Learning Model.
CoRR
Wenzheng Tao, Riddhish Bhalodia, Shireen Y. Elhabian
2022 J jnl
RENs: Relevance Encoding Networks.
CoRR
Krithika Iyer, Riddhish Bhalodia, Shireen Y. Elhabian
2022 — conf
Segmentation Uncertainty Quantification in Cardiac Propagation Models.
CinC
Jess D. Tate, Nejib Zemzemi, Shireen Y. Elhabian, Beáta Ondrusová, Machteld J. Boonstra, Peter M. van Dam, Akil Narayan, Dana H. Brooks, Rob S. MacLeod
2022 — conf
Spatiotemporal Cardiac Statistical Shape Modeling: A Data-Driven Approach.
STACOM@MICCAI
Jadie Adams, Nawazish Khan, Alan Morris, Shireen Y. Elhabian
2022 J jnl
Spatiotemporal Cardiac Statistical Shape Modeling: A Data-Driven Approach.
CoRR
Jadie Adams, Nawazish Khan, Alan Morris, Shireen Y. Elhabian
2022 — conf
Statistical Shape Modeling of Biventricular Anatomy with Shared Boundaries.
STACOM@MICCAI
Krithika Iyer, Alan Morris, Brian Zenger, Karthik Karanth, Benjamin A. Orkild, Oleksandre Korshak, Shireen Y. Elhabian
2022 J jnl
Statistical Shape Modeling of Biventricular Anatomy with Shared Boundaries.
CoRR
Krithika Iyer, Alan Morris, Brian Zenger, Karthik Karanth, Benjamin A. Orkild, Oleksandre Korshak, Shireen Y. Elhabian
2021 — conf
A Cardiac Shape Model for Segmentation Uncertainty Quantification.
CinC
Jess D. Tate, Shireen Y. Elhabian, Nejib Zemzemi, Wilson W. Good, Peter M. van Dam, Dana H. Brooks, Rob S. MacLeod
2021 J jnl
DeepSSM: A Blueprint for Image-to-Shape Deep Learning Models.
CoRR
Riddhish Bhalodia, Shireen Y. Elhabian, Jadie Adams, Wenzheng Tao, Ladislav Kavan, Ross T. Whitaker
2021 J jnl
Learning Deep Features for Shape Correspondence with Domain Invariance.
CoRR
Praful Agrawal, Ross T. Whitaker, Shireen Y. Elhabian
2021 J jnl
Leveraging Unsupervised Image Registration for Discovery of Landmark Shape Descriptor.
CoRR
Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker
2021 J jnl
Leveraging unsupervised image registration for discovery of landmark shape descriptor.
Medical Image Anal.
Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker
2020 — conf
An Image-based Approach for 3D Left Atrium Functional Measurements.
CinC
Alan Morris, Eugene G. Kholmovski, Nassir Marrouche, Joshua Cates, Shireen Y. Elhabian
2020 J jnl
An Optimal, Generative Model for Estimating Multi-Label Probabilistic Maps.
IEEE Trans. Medical Imaging
Praful Agrawal, Ross T. Whitaker, Shireen Y. Elhabian
2020 — conf
Attention-Guided Quality Assessment for Automated Cryo-EM Grid Screening.
MICCAI (5)
Hong Xu, David E. Timm, Shireen Y. Elhabian
2020 J jnl
Attention-guided Quality Assessment for Automated Cryo-EM Grid Screening.
CoRR
Hong Xu, David E. Timm, Shireen Y. Elhabian
2020 J jnl
Benchmarking off-the-shelf statistical shape modeling tools in clinical applications.
CoRR
Anupama Goparaju, Alexandre Bône, Nan Hu, Heath B. Henninger, Andrew E. Anderson, Stanley Durrleman, Matthijs Jacxsens, Alan Morris, Ibolya Csecs, Nassir Marrouche, Shireen Y. Elhabian
2020 — conf
Combined Estimation of Shape and Pose for Statistical Analysis of Articulating Joints.
ShapeMI@MICCAI
Praful Agrawal, Joseph D. Mozingo, Shireen Y. Elhabian, Andrew E. Anderson, Ross T. Whitaker
2020 J jnl
GENs: Generative Encoding Networks.
CoRR
Surojit Saha, Shireen Y. Elhabian, Ross T. Whitaker
2020 A* conf
Infinite ShapeOdds: Nonparametric Bayesian Models for Shape Representations.
AAAI
Wei W. Xing, Shireen Y. Elhabian, Robert Michael Kirby, Ross T. Whitaker, Shandian Zhe
2020 — conf
Right Ventricular Shape Distortion in Tricuspid Regurgitation.
CinC
Ashley E. Morgan, Atefeh Kashani, Brian Zenger, Lindsay C. Rupp, Maura D. Perez, Markus D. Foote, Alan K. Morris, Mark B. Ratcliffe, Jiwon J. Kim, Jonathan W. Weinsaft, Vikas Sharma, Rob S. MacLeod, Shireen Y. Elhabian
2020 — conf
Uncertain-DeepSSM: From Images to Probabilistic Shape Models.
ShapeMI@MICCAI
Jadie Adams, Riddhish Bhalodia, Shireen Y. Elhabian
2020 J jnl
Uncertain-DeepSSM: From Images to Probabilistic Shape Models.
CoRR
Jadie Adams, Riddhish Bhalodia, Shireen Y. Elhabian
2020 J jnl
Visualization of topology optimization designs with representative subset selection.
CoRR
Daniel J. Perry, Vahid Keshavarzzadeh, Shireen Y. Elhabian, Robert M. Kirby, Michael Gleicher, Ross T. Whitaker
2020 — conf
dpVAEs: Fixing Sample Generation for Regularized VAEs.
ACCV (4)
Riddhish Bhalodia, Iain Lee, Shireen Y. Elhabian
2019 — conf
A Cooperative Autoencoder for Population-Based Regularization of CNN Image Registration.
MICCAI (2)
Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker
2019 J jnl
A Cooperative Autoencoder for Population-Based Regularization of CNN Image Registration.
CoRR
Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker
2019 J jnl
CoopSubNet: Cooperating Subnetwork for Data-Driven Regularization of Deep Networks under Limited Training Budgets.
CoRR
Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker
2019 — conf
Does Alignment in Statistical Shape Modeling of Left Atrium Appendage Impact Stroke Prediction?
CinC
Riddhish Bhalodia, Archanasri Subramanian, Alan Morris, Joshua Cates, Ross T. Whitaker, Evgueni Kholmovski, Nassir Marrouche, Shireen Y. Elhabian
2019 — conf
Efficient Segmentation Pipeline Using Diffeomorphic Image Registration: A Validation Study.
CinC
Shalin Parikh, Anupama Goparaju, Riddhish Bhalodia, Bosten Loveless, Alan Morris, Joshua Cates, Evgueni Kholmovski, Nassir Marrouche, Shireen Y. Elhabian
2019 — conf
Interatrial Septum and Appendage Ostium in Atrial Fibrillation Patients: A Population Study.
CinC
Anupama Goparaju, Alan Morris, Ibolya Csecs, Riddhish Bhalodia, Tom Ditter, Kristine Fuimaono, Evgueni Kholmovski, Nassir Marrouche, Joshua Cates, Shireen Y. Elhabian
2019 J jnl
Medial axis segmentation of cranial nerves using shape statistics-aware discrete deformable models.
Int. J. Comput. Assist. Radiol. Surg.
Sharmin Sultana, Praful Agrawal, Shireen Y. Elhabian, Ross T. Whitaker, Jason E. Blatt, Benjamin Gilles, Justin S. Cetas, Tanweer Rashid, Michel A. Audette
2019 J jnl
Mixture Modeling of Global Shape Priors and Autoencoding Local Intensity Priors for Left Atrium Segmentation.
CoRR
Tim Sodergren, Riddhish Bhalodia, Ross T. Whitaker, Joshua Cates, Nassir Marrouche, Shireen Y. Elhabian
2019 J jnl
SetGANs: Enforcing Distributional Accuracy in Generative Adversarial Networks.
CoRR
Alessandro Ferrero, Shireen Y. Elhabian, Ross T. Whitaker
2019 J jnl
dpVAEs: Fixing Sample Generation for Regularized VAEs.
CoRR
Riddhish Bhalodia, Iain Lee, Shireen Y. Elhabian
2018 J jnl
Clustering With Pairwise Relationships: A Generative Approach.
CoRR
Yen-Yun Yu, Shireen Y. Elhabian, Ross T. Whitaker
2018 — conf
Deep Learning for End-to-End Atrial Fibrillation Recurrence Estimation.
CinC
Riddhish Bhalodia, Anupama Goparaju, Tim Sodergren, Ross T. Whitaker, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Joshua Cates, Shireen Y. Elhabian
2018 J jnl
Deep Learning for End-to-End Atrial Fibrillation Recurrence Estimation.
CoRR
Riddhish Bhalodia, Anupama Goparaju, Tim Sodergren, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Joshua Cates, Ross T. Whitaker, Shireen Y. Elhabian
2018 — conf
DeepSSM: A Deep Learning Framework for Statistical Shape Modeling from Raw Images.
ShapeMI@MICCAI
Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker
2018 J jnl
DeepSSM: A Deep Learning Framework for Statistical Shape Modeling from Raw Images.
CoRR
Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker
2018 — conf
Interactive Exploration of Left Atrium Population-Level Morphology in Atrial Fibrillation Patients.
CinC
Tim Sodergren, Anupama Goparaju, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Joshua Cates, Shireen Y. Elhabian
2018 — conf
Mixture Modeling of Global Shape Priors and Autoencoding Local Intensity Priors for Left Atrium Segmentation.
STACOM@MICCAI
Tim Sodergren, Riddhish Bhalodia, Ross T. Whitaker, Joshua Cates, Nassir Marrouche, Shireen Y. Elhabian
2018 — conf
On the Evaluation and Validation of Off-the-Shelf Statistical Shape Modeling Tools: A Clinical Application.
ShapeMI@MICCAI
Anupama Goparaju, Ibolya Csecs, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Ross T. Whitaker, Shireen Y. Elhabian
2018 J jnl
On the Evaluation and Validation of Off-the-shelf Statistical Shape Modeling Tools: A Clinical Application.
CoRR
Anupama Goparaju, Ibolya Csecs, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Ross T. Whitaker, Shireen Y. Elhabian
2018 J jnl
Skeletal Shape Correspondence Through Entropy.
IEEE Trans. Medical Imaging
Liyun Tu, Martin Styner, Jared Vicory, Shireen Y. Elhabian, Rui Wang, Jun-Pyo Hong, Beatriz Paniagua, Juan-Carlos Prieto, Dan Yang, Ross T. Whitaker, Stephen M. Pizer
2017 — conf
From Label Maps to Generative Shape Models: A Variational Bayesian Learning Approach.
IPMI
Shireen Y. Elhabian, Ross T. Whitaker
2017 — conf
Learning Deep Features for Automated Placement of Correspondence Points on Ensembles of Complex Shapes.
MICCAI (1)
Praful Agrawal, Ross T. Whitaker, Shireen Y. Elhabian
2017 J jnl
ShapeCut: Bayesian surface estimation using shape-driven graph.
Medical Image Anal.
Gopalkrishna Veni, Shireen Y. Elhabian, Ross T. Whitaker
2017 A* conf
ShapeOdds: Variational Bayesian Learning of Generative Shape Models.
CVPR
Shireen Y. Elhabian, Ross T. Whitaker
2016 — conf
Compressive sensing based Q-space resampling for handling fast bulk motion in hardi acquisitions.
ISBI
Shireen Y. Elhabian, Clement Vachet, Joseph Piven, Martin Styner, Guido Gerig
2016 J jnl
Entropy-based correspondence improvement of interpolated skeletal models.
Comput. Vis. Image Underst.
Liyun Tu, Jared Vicory, Shireen Y. Elhabian, Beatriz Paniagua, Juan-Carlos Prieto, James N. Damon, Ross T. Whitaker, Martin Styner, Stephen M. Pizer
2016 — conf
Optimal parameter map estimation for shape representation: A generative approach.
ISBI
Shireen Y. Elhabian, Praful Agrawal, Ross T. Whitaker
2016 — conf
Towards a Statistical Shape-Aware Deformable Contour Model for Cranial Nerve Identification.
CLIP@MICCAI
Sharmin Sultana, Praful Agrawal, Shireen Y. Elhabian, Ross T. Whitaker, Tanweer Rashid, Jason E. Blatt, Justin S. Cetas, Michel A. Audette
2015 — conf
A Bayesian formulation of graph-cut surface estimation with global shape priors.
ISBI
Gopalkrishna Veni, Shireen Y. Elhabian, Ross T. Whitaker
2015 J jnl
Helmholtz HSH-Based Basis: A Compact Phenomenological Representation of Arbitrary Reflectance.
Informatica
Shireen Y. Elhabian, Aly A. Farag
2014 — conf
A preliminary study on the effect of motion correction on HARDI reconstruction.
ISBI
Shireen Y. Elhabian, Yaniv Gur, Clement Vachet, Joseph Piven, Martin Styner, Ilana Leppert, G. Bruce Pike, Guido Gerig
2014 J jnl
Appearance-based approach for complete human jaw shape reconstruction.
IET Comput. Vis.
Shireen Y. Elhabian, Aly A. Farag
2014 J jnl
Image irradiance harmonics: a phenomenological model of image irradiance of arbitrary surface reflectance.
IET Comput. Vis.
Shireen Y. Elhabian, Aly A. Farag
2014 J jnl
Shape-from-shading using sensor and physical object characteristics applied to human teeth surface reconstruction.
IET Comput. Vis.
Aly S. Abdelrahim, Aly A. Farag, Shireen Y. Elhabian, Moumen T. El-Melegy
2014 B conf
Statistical morphable model for human teeth restoration.
ICIP
Eslam A. Mostafa, Shireen Y. Elhabian, Aly S. Abdelrahim, Salwa Elshazly, Aly A. Farag
2013 B conf
A 3D reconstruction of the human jaw from a single image.
ICIP
Aly S. Abdelrahim, Ahmed Shalaby, Shireen Y. Elhabian, James H. Graham, Aly A. Farag
2013 A* conf
Analytic Bilinear Appearance Subspace Construction for Modeling Image Irradiance under Natural Illumination and Non-Lambertian Reflectance.
CVPR
Shireen Y. Elhabian, Aly A. Farag
2013 — conf
Clinical crowns shape reconstruction - An image-based approach.
ISBI
Shireen Y. Elhabian, Aly S. Abdelrahim, Amal A. Farag, David Tasman, Wael Aboelmaaty, Allan G. Farman
2013 J jnl
Towards efficient image irradiance modelling of convex Lambertian surfaces under single viewpoint and frontal illumination.
IET Comput. Vis.
Shireen Y. Elhabian, Aly A. Farag
2012 — conf
A passive stereo system for 3D human face reconstruction and recognition at a distance.
CVPR Workshops
Mostafa Abdelrahman, Asem M. Ali, Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag
2012 — conf
Fully automated 3D colon segmentation for early detection of colorectal cancer based on convex formulation of the active contour model.
CVPR Workshops
Marwa Ismail, Shireen Y. Elhabian, Aly A. Farag, Gerald W. Dryden, Albert Seow
2012 — conf
Model-Based Human Teeth Shape Recovery from a Single Optical Image with Unknown Illumination.
MCV
Aly A. Farag, Shireen Y. Elhabian, Aly S. Abdelrehim, Wael Aboelmaaty, Allan G. Farman, David Tasman
2012 B conf
Modeling image irradiance under natural illumination and isotropic surface reflectance.
ICIP
Shireen Y. Elhabian, Aly A. Farag
2012 — conf
Non-Lambertian Model-based Facial Shape Recovery from Single Image Under Unknown General Illumination.
CRV
Shireen Y. Elhabian, Eslam A. Mostafa, Ham M. Rara, Aly A. Farag
2012 B conf
Occlusal surface reconstruction of human teeth from a single image based on object and sensor physical characteristics.
ICIP
Aly S. Abdelrahim, Aly A. Farag, Shireen Y. Elhabian, Eslam A. Mostafa, Wael Aboelmaaty
2011 — conf
Illumination-invariant Statistical Shape Recovery with Contiguous Occlusion.
CRV
Shireen Y. Elhabian, Ham M. Rara, Asem M. Ali, Aly A. Farag
2011 — conf
Modeling Lambertian Surfaces Under Unknown Distant Illumination Using Hemispherical Harmonics.
CRV
Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag
2011 B conf
On the use of hemispherical harmonics for modeling images of objects under unknown distant illumination.
ICIP
Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag
2011 — conf
Solving Geometric Co-registration Problem of Multi-spectral Remote Sensing Imagery Using SIFT-Based Features toward Precise Change Detection.
ISVC (2)
Mostafa Abdelrahman, Asem M. Ali, Shireen Y. Elhabian, Aly A. Farag
2011 A conf
Towards Efficient and Compact Phenomenological Representation of Arbitrary Bidirectional Surface Reflectance.
BMVC
Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag
2011 A* conf
Towards accurate and efficient representation of image irradiance of convex-Lambertian objects under unknown near lighting.
ICCV
Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag
2010 B conf
3D face recovery from intensities of general and unknown lighting using Partial Least Squares.
ICIP
Ham M. Rara, Shireen Y. Elhabian, Thomas L. Starr, Aly A. Farag
2010 B conf
Face Recognition at-a-Distance Using Texture, Dense- and Sparse-Stereo Reconstruction.
ICPR
Ham M. Rara, Asem M. Ali, Shireen Y. Elhabian, Thomas L. Starr, Aly A. Farag
2010 — conf
Face recognition at-a-distance using texture and sparse-stereo reconstruction.
BTAS
Ham M. Rara, Aly A. Farag, Shireen Y. Elhabian, Asem M. Ali, William Miller, Thomas L. Starr, Todd Davis
2010 — conf
Feature-Based Lung Nodule Classification.
ISVC (3)
Amal A. Farag, Asem M. Ali, James H. Graham, Shireen Y. Elhabian, Aly A. Farag, Robert Falk
2010 — conf
Surface Modeling of the Corpus Callosum from MRI Scans.
ISVC (3)
Ahmed A. Farag, Shireen Y. Elhabian, Mostafa Abdelrahman, James H. Graham, Aly A. Farag, Dongqing Chen, Manuel Casanova
2010 — conf
Toward Precise Pulmonary Nodule Descriptors for Nodule Type Classification.
MICCAI (3)
Amal A. Farag, Shireen Y. Elhabian, James H. Graham, Aly A. Farag, Robert Falk
2009 — conf
A Framework for Long Distance Face Recognition Using Dense - and Sparse-Stereo Reconstruction.
ISVC (1)
Ham M. Rara, Shireen Y. Elhabian, Asem M. Ali, Travis R. Gault, Mike Miller, Thomas L. Starr, Aly A. Farag
2009 B conf
Distant face recognition based on sparse-stereo reconstruction.
ICIP
Ham M. Rara, Shireen Y. Elhabian, Asem M. Ali, Mike Miller, Thomas L. Starr, Aly A. Farag
2009 — conf
Face recognition at-a-distance based on sparse-stereo reconstruction.
CVPR Workshops
Ham M. Rara, Shireen Y. Elhabian, Asem M. Ali, Mike Miller, Thomas L. Starr, Aly A. Farag
2009 B conf
Model-based shape recovery from single images of general and unknown lighting.
ICIP
Ham M. Rara, Shireen Y. Elhabian, Thomas L. Starr, Aly A. Farag
2008 — conf
Noise Analysis of a SFS Algorithm Formulated under Various Imaging Conditions.
ISVC (1)
Amal A. Farag, Shireen Y. Elhabian, Abdelrehim H. Ahmed, Aly A. Farag