Shinn-Ying Ho

91 papers A 5B 14C 10Journal 53Unranked 9
YearRankTypeTitle / Venue / Authors
2025 C conf
EL-DRP: An Evolutionary Learning-Based Multi-Omics Framework for Drug Response Prediction with Interpretable Biomarker Selection.
CIBCB
Yann-Jen Ho, Paik You Sheng, Yu-Ruo Chen, Yun Tang, Shinn-Ying Ho, Tzong-Yi Lee
2025 J jnl
Establishing the Asia & Pacific Bioinformatics Joint Congress: a historic milestone in regional bioinformatics collaboration.
Briefings Bioinform.
Asif M. Khan, Susumu Goto, Kenta Nakai, Limsoon Wong, Diane E. Kovats, Yuki Saito, Shinya Ikematsu, Yoshihiro Yamanishi, Nurul Salwanie Che Wahid, Harpreet Singh, Pradeep Eranti, Yi-Ping Phoebe Chen, Tae-Min Kim, Shinn-Ying Ho, Jessica Cara Mar, Wataru Iwasaki, Jayaraman Valadi, Prashanth Suravajhala, Christian Schönbach, Tin Wee Tan, Shoba Ranganathan, Kiyoko F. Aoki-Kinoshita
2025 C conf
miSAM: Robust MicroRNA Expression Estimation Using Bi-Objective Evolutionary Learning Algorithm in Cancer Transcriptomics.
CIBCB
Yann-Lin Ho, Yann-Jen Ho, Shinn-Ying Ho, Tzong-Yi Lee
2024 — conf
Evolutionary learning-derived lncRNA signature with biomarker discovery for predicting stage of colon adenocarcinoma.
EMBC
Yann-Lin Ho, Yann-Jen Ho, Fang-Yu Ko, Shinn-Ying Ho
2020 J jnl
GREMA: modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem.
Bioinform.
Ming-Ju Tsai, Jyun-Rong Wang, Shinn-Jang Ho, Li-Sun Shu, Wen-Lin Huang, Shinn-Ying Ho
2018 — conf
Prediction of Metastasis in Head and Neck Cancer from Computed Tomography Images.
ICRAI
Tzu-Yun Lo, Pei-Yin Wei, Chia-Heng Yen, Jiing-Feng Lirng, Muh-Hwa Yang, Pen-Yuan Chu, Shinn-Ying Ho
2018 J jnl
Recognition-based character segmentation for multi-level writing style.
Int. J. Document Anal. Recognit.
Papangkorn Inkeaw, Jakramate Bootkrajang, Phasit Charoenkwan, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich
2017 J jnl
ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives.
Bioinform.
Jyun-Rong Wang, Wen-Lin Huang, Ming-Ju Tsai, Kai-Ti Hsu, Hui-Ling Huang, Shinn-Ying Ho
2017 J jnl
Recognition of handwritten Lanna Dhamma characters using a set of optimally designed moment features.
Int. J. Document Anal. Recognit.
Papangkorn Inkeaw, Phasit Charoenkwan, Hui-Ling Huang, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich
2016 J jnl
A hydrophobic spine stabilizes a surface-exposed α-helix according to analysis of the solvent-accessible surface area.
BMC Bioinform.
Yi-Fan Liou, Hui-Ling Huang, Shinn-Ying Ho
2016 — conf
Rule-Based Page Segmentation for Palm Leaf Manuscript on Color Image.
ICADL
Papangkorn Inkeaw, Jakramate Bootkrajang, Phasit Charoenkwan, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich
2016 J jnl
SCMBYK: prediction and characterization of bacterial tyrosine-kinases based on propensity scores of dipeptides.
BMC Bioinform.
Tamara Vasylenko, Yi-Fan Liou, Po-Chin Chiou, Hsiao-Wei Chu, Yung-Sung Lai, Yu-Ling Chou, Hui-Ling Huang, Shinn-Ying Ho
2015 J jnl
Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes.
BMC Bioinform.
Yerukala Sathipati Srinivasulu, Jyun-Rong Wang, Kai-Ti Hsu, Ming-Ju Tsai, Phasit Charoenkwan, Wen-Lin Huang, Hui-Ling Huang, Shinn-Ying Ho
2015 J jnl
Discovery of prognostic biomarkers for predicting lung cancer metastasis using microarray and survival data.
BMC Bioinform.
Hui-Ling Huang, Yu-Chung Wu, Li-Jen Su, Yun-Ju Huang, Phasit Charoenkwan, Wen-Liang Chen, Hua-Chin Lee, William C. Chu, Shinn-Ying Ho
2015 J jnl
GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes.
Bioinform.
Yi-Hsiung Chen, Chi-Dung Yang, Ching-Ping Tseng, Hsien-Da Huang, Shinn-Ying Ho
2015 J jnl
SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method.
BMC Bioinform.
Tamara Vasylenko, Yi-Fan Liou, Hong-An Chen, Phasit Charoenkwan, Hui-Ling Huang, Shinn-Ying Ho
2014 J jnl
SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides.
BMC Bioinform.
Yi-Fan Liou, Phasit Charoenkwan, Yerukala Sathipati Srinivasulu, Tamara Vasylenko, Shih-Chung Lai, Hua-Chin Lee, Yi-Hsiung Chen, Hui-Ling Huang, Shinn-Ying Ho
2013 — conf
Applying Cloud Computing Technologies to Gerontology and Geriatrics Health Care System (GGHCS).
QSIC
Tse-Chuan Hsu, Chih-Hung Chang, William C. Chu, Shinn-Ying Ho, Nien-Lin Hsueh, Wei-Bin Lee
2013 C conf
Designing predictors of halophilic and non-halophilic proteins using support vector machines.
CIBCB
Hui-Ling Huang, Yerukala Sathipati Srinivasulu, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho
2013 — conf
EEG-based motion sickness classification system with genetic feature selection.
CCMB
Li-Wei Ko, Hua-Chin Lee, Shu-Fang Tsai, Tsung-Chin Shih, Ya-Ting Chuang, Hui-Ling Huang, Shinn-Ying Ho, Chin-Teng Lin
2013 J jnl
HCS-Neurons: identifying phenotypic changes in multi-neuron images upon drug treatments of high-content screening.
BMC Bioinform.
Phasit Charoenkwan, Eric Hwang, Robert W. Cutler, Hua-Chin Lee, Li-Wei Ko, Hui-Ling Huang, Shinn-Ying Ho
2013 C conf
Predicting protein crystallization using a simple scoring card method.
CIBCB
Watshara Shoombuatong, Hui-Ling Huang, Jeerayut Chaijaruwanich, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho
2013 — conf
Prediction of Mouse Senescence from HE-Stain Liver Images Using an Ensemble SVM Classifier.
ACIIDS (2)
Hui-Ling Huang, Ming-Hsin Hsu, Hua-Chin Lee, Phasit Charoenkwan, Shinn-Jang Ho, Shinn-Ying Ho
2012 B conf
Motion sickness estimation system.
IJCNN
Chin-Teng Lin, Shu-Fang Tsai, Hua-Chin Lee, Hui-Ling Huang, Shinn-Ying Ho, Li-Wei Ko
2012 J jnl
Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition.
BMC Bioinform.
Hui-Ling Huang, Phasit Charoenkwan, Te-Fen Kao, Hua-Chin Lee, Fang-Lin Chang, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, Wen-Liang Chen, Shinn-Ying Ho
2011 J jnl
NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery.
BMC Bioinform.
Shinn-Ying Ho, Chih-Yuan Chao, Hui-Ling Huang, Tzai-Wen Chiu, Phasit Charoenkwan, Eric Hwang
2011 J jnl
POPISK: T-cell reactivity prediction using support vector machines and string kernels.
BMC Bioinform.
Chun-Wei Tung, Matthias Ziehm, Andreas Kämper, Oliver Kohlbacher, Shinn-Ying Ho
2011 J jnl
Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties.
BMC Bioinform.
Hui-Ling Huang, I-Che Lin, Yi-Fan Liou, Chia-Ta Tsai, Kai-Ti Hsu, Wen-Lin Huang, Shinn-Jang Ho, Shinn-Ying Ho
2009 J jnl
Predicting protein subnuclear localization using GO-amino-acid composition features.
Biosyst.
Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shinn-Ying Ho
2009 J jnl
Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.
BMC Bioinform.
Hsin-Nan Lin, Ching-Tai Chen, Ting-Yi Sung, Shinn-Ying Ho, Wen-Lian Hsu
2009 J jnl
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes.
Nucleic Acids Res.
Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang
2008 J jnl
A Novel Intelligent Multiobjective Simulated Annealing Algorithm for Designing Robust PID Controllers.
IEEE Trans. Syst. Man Cybern. Part A
Ming-Hao Hung, Li-Sun Shu, Shinn-Jang Ho, Shiow-Fen Hwang, Shinn-Ying Ho
2008 J jnl
Computational identification of ubiquitylation sites from protein sequences.
BMC Bioinform.
Chun-Wei Tung, Shinn-Ying Ho
2008 B conf
Inferring S-system models of genetic networks from a time-series real data set of gene expression profiles.
IEEE Congress on Evolutionary Computation
Hui-Ling Huang, Kuan-Wei Chen, Shinn-Jang Ho, Shinn-Ying Ho
2008 J jnl
OPSO: Orthogonal Particle Swarm Optimization and Its Application to Task Assignment Problems.
IEEE Trans. Syst. Man Cybern. Part A
Shinn-Ying Ho, Hung-Sui Lin, Weei-Hurng Liauh, Shinn-Jang Ho
2008 J jnl
ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization.
BMC Bioinform.
Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang, Shinn-Ying Ho
2008 C conf
ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localization.
CIBCB
Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shinn-Ying Ho
2007 J jnl
Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method.
Biosyst.
Wen-Lin Huang, Hung-Ming Chen, Shiow-Fen Hwang, Shinn-Ying Ho
2007 — conf
Acquisition of rule-based knowledge for analyzing DNA-binding sites in proteins.
Infoscale
Shinn-Jang Ho, Chia-Yun Chang, Liang-Tsung Huang, Shiow-Fen Hwang, Shinn-Ying Ho
2007 J jnl
An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway Identification From Gene Expression Profiles.
IEEE ACM Trans. Comput. Biol. Bioinform.
Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang
2007 C conf
Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data.
CIBCB
Hui-Ling Huang, Yi-Hsiung Chen, Dwight D. Koeberl, Shinn-Ying Ho
2007 J jnl
Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method.
Biosyst.
Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang
2007 J jnl
POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties.
Bioinform.
Chun-Wei Tung, Shinn-Ying Ho
2007 J jnl
ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features.
Biosyst.
Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho
2007 J jnl
SODOCK: Swarm optimization for highly flexible protein-ligand docking.
J. Comput. Chem.
Hung-Ming Chen, Bo-Fu Liu, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho
2007 J jnl
Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers.
Biosyst.
Hui-Ling Huang, Chong-Cheng Lee, Shinn-Ying Ho
2007 J jnl
iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations.
Bioinform.
Liang-Tsung Huang, M. Michael Gromiha, Shinn-Ying Ho
2006 B conf
Intelligent Particle Swarm Optimization in Multi-objective Problems.
PAKDD
Shinn-Jang Ho, Wen-Yuan Ku, Jun-Wun Jou, Ming-Hao Hung, Shinn-Ying Ho
2006 J jnl
Knowledge acquisition and development of accurate rules for predicting protein stability changes.
Comput. Biol. Chem.
Liang-Tsung Huang, M. Michael Gromiha, Shiow-Fen Hwang, Shinn-Ying Ho
2006 J jnl
Optimizing fuzzy neural networks for tuning PID controllers using an orthogonal simulated annealing algorithm OSA.
IEEE Trans. Fuzzy Syst.
Shinn-Jang Ho, Li-Sun Shu, Shinn-Ying Ho
2006 B conf
Scoring Method for Tumor Prediction from Microarray Data Using an Evolutionary Fuzzy Classifier.
PAKDD
Shinn-Ying Ho, Chih-Hung Hsieh, Kuan-Wei Chen, Hui-Ling Huang, Hung-Ming Chen, Shinn-Jang Ho
2005 J jnl
Design of nearest neighbor classifiers: multi-objective approach.
Int. J. Approx. Reason.
Jian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho
2005 J jnl
Designing structure-specified mixed H
IEEE Trans. Control. Syst. Technol.
Shinn-Jang Ho, Shinn-Ying Ho, Ming-Hao Hung, Li-Sun Shu, Hui-Ling Huang
2005 B conf
Efficient gene selection for classification of microarray data.
Congress on Evolutionary Computation
Shinn-Ying Ho, Chong-Cheng Lee, Hung-Ming Chen, Hui-Ling Huang
2005 B conf
Evolutionary divide-and-conquer approach to inferring S-system models of genetic networks.
Congress on Evolutionary Computation
Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang
2005 B conf
Flexible protein-ligand docking using particle swarm optimization.
Congress on Evolutionary Computation
Bo-Fu Liu, Hung-Ming Chen, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho
2005 — conf
Inference of S-system Models for Large-Scale Genetic Networks.
ICDE Workshops
Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu
2005 C conf
Interpretable Prediction of Protein Stability Changes upon Mutation by Using Decision Tree.
CIBCB
Larry Huang, Wen-Lin Huang, Shinn-Ying Ho, Shiow-Fen Hwang
2005 A conf
MeSwarm: memetic particle swarm optimization.
GECCO
Bo-Fu Liu, Hung-Ming Chen, Jian-Hung Chen, Shiow-Fen Hwang, Shinn-Ying Ho
2005 A conf
Quality-time analysis of multi-objective evolutionary algorithms.
GECCO
Jian-Hung Chen, Shinn-Ying Ho, David E. Goldberg
2004 — conf
A Novel Multi-objective Orthogonal Simulated Annealing Algorithm for Solving Multi-objective Optimization Problems with a Large Number of Parameters.
GECCO (1)
Li-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho, Jian-Hung Chen, Ming-Hao Hung
2004 J jnl
An orthogonal simulated annealing algorithm for large floorplanning problems.
IEEE Trans. Very Large Scale Integr. Syst.
Shinn-Ying Ho, Shinn-Jang Ho, Yi-Kuang Lin, W. C.-C. Chu
2004 B conf
Design of Nearest Neighbor Classifiers Using an Intelligent Multi-objective Evolutionary Algorithm.
PRICAI
Jian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho
2004 J jnl
Design of accurate classifiers with a compact fuzzy-rule base using an evolutionary scatter partition of feature space.
IEEE Trans. Syst. Man Cybern. Part B
Shinn-Ying Ho, Hung-Ming Chen, Shinn-Jang Ho, Tai-Kang Chen
2004 J jnl
Inheritable genetic algorithm for biobjective 0/1 combinatorial optimization problems and its applications.
IEEE Trans. Syst. Man Cybern. Part B
Shinn-Ying Ho, Jian-Hung Chen, Meng-Hsun Huang
2004 J jnl
Intelligent evolutionary algorithms for large parameter optimization problems.
IEEE Trans. Evol. Comput.
Shinn-Ying Ho, Li-Sun Shu, Jian-Hung Chen
2004 J jnl
OSA: orthogonal simulated annealing algorithm and its application to designing mixed H
IEEE Trans. Syst. Man Cybern. Part A
Shin-Hang Ho, Shinn-Ying Ho, Li-Sun Shu
2003 C conf
A Non-parametric Image Segmentation Algorithm Using an Orthogonal Experimental Design Based Hill-Climbing.
IDEAL
Kual-Zheng Lee, Wei-Che Chuang, Shinn-Ying Ho
2003 C conf
A Novel Orthogonal Simulated Annealing Algorithm for Optimization of Electromagnetic Problems.
IDEAL
Li-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho
2003 J jnl
Design and Analysis of an Efficient Evolutionary Image Segmentation Algorithm.
J. VLSI Signal Process.
Shinn-Ying Ho, Kual-Zheng Lee
2003 J jnl
Mesh optimization for surface approximation using an efficient coarse-to-fine evolutionary algorithm.
Pattern Recognit.
Hui-Ling Huang, Shinn-Ying Ho
2003 C conf
Model-Based Pose Estimation of Human Motion Using Orthogonal Simulated Annealing.
IDEAL
Kual-Zheng Lee, Ting-Wei Liu, Shinn-Ying Ho
2002 B conf
An evolutionary approach for pose determination and interpretation of occluded articulated objects.
IEEE Congress on Evolutionary Computation
Shinn-Ying Ho, Zhen-Bang Huang, Shinn-Jang Ho
2002 B conf
Design of an optimal nearest neighbor classifier using an intelligent genetic algorithm.
IEEE Congress on Evolutionary Computation
Shinn-Ying Ho, Chia-Cheng Liu, Soundy Liu, Jun-Wen Jou
2002 J jnl
Design of an optimal nearest neighbor classifier using an intelligent genetic algorithm.
Pattern Recognit. Lett.
Shinn-Ying Ho, Chia-Cheng Liu, Soundy Liu
2002 B conf
Design of high performance fuzzy controllers using flexible parameterized membership functions and intelligent genetic algorithms.
IEEE Congress on Evolutionary Computation
Shinn-Ying Ho, Tai-Kang Chen, Shinn-Jang Ho
2002 A conf
Fitness Inheritance In Multi-objective Optimization.
GECCO
Jian-Hung Chen, David E. Goldberg, Shinn-Ying Ho, Kumara Sastry
2001 J jnl
An efficient evolutionary algorithm for accurate polygonal approximation.
Pattern Recognit.
Shinn-Ying Ho, Yeong-Chinq Chen
2001 B conf
An efficient evolutionary image segmentation algorithm.
CEC
Shinn-Ying Ho, Kual-Zheng Lee
2001 J jnl
Facial modeling from an uncalibrated face image using a coarse-to-fine genetic algorithm.
Pattern Recognit.
Shinn-Ying Ho, Hui-Ling Huang
2001 J jnl
Facial modeling from an uncalibrated face image using flexible generic parameterized facial models.
IEEE Trans. Syst. Man Cybern. Part B
Shinn-Ying Ho, Hui-Ling Huang
2001 B conf
Mesh optimization for surface approximation using an efficient coarse-to-fine evolutionary algorithm.
CEC
Hui-Ling Huang, Shinn-Ying Ho
2000 A conf
A Simple and Fast GA-SA hybrid Image Segmentation Algorithm.
GECCO
Shinn-Ying Ho, Kual-Zheng Lee
2000 A conf
An Efficient Quadratic Curve Approximation Using an Intelligent Genetic Algorithm.
GECCO
Shinn-Ying Ho, Meng-Hsun Huang
2000 B conf
Designing an Efficient Fuzzy classifier Using an Intelligent Genetic Algorithm.
COMPSAC
Shinn-Ying Ho, Tai-Kang Chen, Shinn-Jang Ho
1998 J jnl
An analytic solution for the pose determination of human faces from a monocular image.
Pattern Recognit. Lett.
Shinn-Ying Ho, Hui-Ling Huang
1994 J jnl
Measuring 3-D location and shape parameters of cylinders by a spatial encoding technique.
IEEE Trans. Robotics Autom.
Zen Chen, Tsorng-Lin Chia, Shinn-Ying Ho
1993 J jnl
An effective search approach to camera parameter estimation using an arbitrary planar calibration object.
Pattern Recognit.
Zen Chen, Chao-Ming Wang, Shinn-Ying Ho
1993 J jnl
Incremental model building of polyhedral objects using structured light.
Pattern Recognit.
Zen Chen, Shinn-Ying Ho
1993 J jnl
Polyhedral face reconstruction and modeling from a single image with structured light.
IEEE Trans. Syst. Man Cybern.
Zen Chen, Shinn-Ying Ho, Din-Chang Tseng
1991 J jnl
Computer vision for robust 3D aircraft recognition with fast library search.
Pattern Recognit.
Zen Chen, Shinn-Ying Ho