Shinichi Morishita

77 papers A* 7B 8Journal 40Unranked 19
YearRankTypeTitle / Venue / Authors
2025 J jnl
Approximating edit distances between complex tandem repeats efficiently.
Bioinform.
Riki Kawahara, Shinichi Morishita
2023 J jnl
Decomposing mosaic tandem repeats accurately from long reads.
Bioinform.
Bansho Masutani, Riki Kawahara, Shinichi Morishita
2023 J jnl
JTK: targeted diploid genome assembler.
Bioinform.
Bansho Masutani, Yoshihiko Suzuki, Yuta Suzuki, Shinichi Morishita
2021 J jnl
Finding long tandem repeats in long noisy reads.
Bioinform.
Shinichi Morishita, Kazuki Ichikawa, Eugene W. Myers
2021 J jnl
Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing.
PLoS Comput. Biol.
Bansho Masutani, Shin-ichi Arimura, Shinichi Morishita
2020 J jnl
HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C.
Bioinform.
Ryo Nakabayashi, Shinichi Morishita
2019 J jnl
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.
Bioinform.
Bansho Masutani, Shinichi Morishita
2019 J jnl
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.
Bioinform.
Bansho Masutani, Shinichi Morishita
2016 J jnl
AgIn: measuring the landscape of CpG methylation of individual repetitive elements.
Bioinform.
Yuta Suzuki, Jonas Korlach, Stephen W. Turner, Tatsuya Tsukahara, Junko Taniguchi, Wei Qu, Kazuki Ichikawa, Jun Yoshimura, Hideaki Yurino, Yuji Takahashi, Jun Mitsui, Hiroyuki Ishiura, Shoji Tsuji, Hiroyuki Takeda, Shinichi Morishita
2016 — ed.
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016, Shenzhen, China, December 15-18, 2016
BIBM
Tianhai Tian, Qinghua Jiang, Yunlong Liu, Kevin Burrage, Jiangning Song, Yadong Wang, Xiaohua Hu, Shinichi Morishita, Qian Zhu, Guohua Wang
2016 — conf
Preface.
BIBM
Yadong Wang, Kevin Burrage, Yunlong Liu, Shinichi Morishita, Tianhai Tian, Qinghua Jiang, Jiangning Song, Guohua Wang, Qian Zhu, Xiaohua Tony Hu
2015 J jnl
A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states.
BMC Genom.
Kazuki Ichikawa, Shinichi Morishita
2014 J jnl
A Simple but Powerful Heuristic Methodfor Accelerating $k$ -Means Clusteringof Large-Scale Data in Life Science.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kazuki Ichikawa, Shinichi Morishita
2014 J jnl
Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing.
Bioinform.
Koichiro Doi, Taku Monjo, Pham H. Hoang, Jun Yoshimura, Hideaki Yurino, Jun Mitsui, Hiroyuki Ishiura, Yuji Takahashi, Yaeko Ichikawa, Jun Goto, Shoji Tsuji, Shinichi Morishita
2011 J jnl
Accelerating Path-free XML Queries in RDBMS.
Inf. Media Technol.
Hongyan Wu, Taro L. Saito, Shinichi Morishita
2011 — ed.
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, Atlanta, GA, USA, November 12-15, , 2011
BIBM
Fang-Xiang Wu, Mohammed Javeed Zaki, Shinichi Morishita, Yi Pan, Stephen Wong, Anastasia Christianson, Xiaohua Hu
2011 — conf
Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs.
ICCABS
Shinichi Morishita
2011 — conf
Poster: Robust estimation of DNA methylation with local regression.
ICCABS
Atsushi Sasaki, Shinichi Morishita
2009 J jnl
MachiBase: a
Nucleic Acids Res.
Budrul Ahsan, Taro L. Saito, Shin-ichi Hashimoto, Keigo Muramatsu, Manabu Tsuda, Atsushi Sasaki, Kouji Matsushima, Toshiro Aigaki, Shinichi Morishita
2009 J jnl
UTGB toolkit for personalized genome browsers.
Bioinform.
Taro L. Saito, Jun Yoshimura, Shin Sasaki, Budrul Ahsan, Atsushi Sasaki, Reginaldo Kuroshu, Shinichi Morishita
2009 J jnl
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect.
BMC Bioinform.
Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei
2008 — conf
Relational-style XML query.
SIGMOD Conference
Taro L. Saito, Shinichi Morishita
2008 J jnl
UTGB/medaka: genomic resource database for medaka biology.
Nucleic Acids Res.
Budrul Ahsan, Daisuke Kobayashi, Tomoyuki Yamada, Masahiro Kasahara, Shin Sasaki, Taro L. Saito, Yukinobu Nagayasu, Koichiro Doi, Yoichiro Nakatani, Wei Qu, Tomoko Jindo, Atsuko Shimada, Kiyoshi Naruse, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita
2007 B conf
Efficient Integration of Structure Indexes of XML.
DASFAA
Taro L. Saito, Shinichi Morishita
2006 — conf
Amoeba Join: Overcoming Structural Fluctuations in XML Data.
WebDB
Taro L. Saito, Shinichi Morishita
2006 J jnl
PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome.
Nucleic Acids Res.
Tomoyuki Yamada, Haruhiko Soma, Shinichi Morishita
2005 J jnl
5'SAGE: 5'-end Serial Analysis of Gene Expression database.
Nucleic Acids Res.
Yasuhiro Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji Matsushima, Shinichi Morishita
2005 J jnl
Accelerated off-target search algorithm for siRNA.
Bioinform.
Tomoyuki Yamada, Shinichi Morishita
2005 J jnl
Data mining tools for the
Nucleic Acids Res.
Taro L. Saito, Jun Sese, Yoichiro Nakatani, Fumi Sano, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita
2005 J jnl
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.
Nucleic Acids Res.
Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita
2004 J jnl
Computing Highly Specific and Noise-tolerant Oligomers Efficiently.
J. Bioinform. Comput. Biol.
Tomoyuki Yamada, Shinichi Morishita
2004 J jnl
Constrained clusters of gene expression profiles with pathological features.
Bioinform.
Jun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato, Shinichi Morishita
2004 — conf
Data Mining: The Next Generation.
Perspectives Workshop: Data Mining: The Next Generation
Raghu Ramakrishnan, Rakesh Agrawal, Johann-Christoph Freytag, Toni Bollinger, Christopher W. Clifton, Saso Dzeroski, Jochen Hipp, Daniel A. Keim, Stefan Kramer, Hans-Peter Kriegel, Ulf Leser, Bing Liu, Heikki Mannila, Rosa Meo, Shinichi Morishita, Raymond T. Ng, Jian Pei, Prabhakar Raghavan, Myra Spiliopoulou, Jaideep Srivastava, Vicenç Torra
2004 J jnl
Development of Image Processing Program for Yeast Cell Morphology.
J. Bioinform. Comput. Biol.
Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita
2004 — conf
Itemset Classified Clustering.
PKDD
Jun Sese, Shinichi Morishita
2004 — ed.
Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), August 22th, 2004, Seattle, Washington, USA
BIOKDD
Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos
2004 J jnl
Report on BIOKDD04: workshop on data mining in Bioinformatics.
SIGKDD Explor.
Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos
2004 J jnl
SCMD: Saccharomyces cerevisiae Morphological Database.
Nucleic Acids Res.
Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita
2004 J jnl
siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.
Nucleic Acids Res.
Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo
2003 J jnl
A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome.
J. Bioinform. Comput. Biol.
Jun Ogasawara, Shinichi Morishita
2003 — conf
Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently.
CSB
Tomoyuki Yamada, Shinichi Morishita
2003 J jnl
Preface.
Theor. Comput. Sci.
Setsuo Arikawa, Koichi Furukawa, Shinichi Morishita, Hiroshi Motoda
2002 — conf
Answering the Most Correlated N Association Rules Efficiently.
PKDD
Jun Sese, Shinichi Morishita
2002 — conf
Computing Optimal Hypotheses Efficiently for Boosting.
Progress in Discovery Science
Shinichi Morishita
2002 — conf
Fast and Sensitive Algorithm for Aligning ESTs to Human Genome.
CSB
Jun Ogasawara, Shinichi Morishita
2002 J jnl
KDD Cup 2001 Report.
SIGKDD Explor.
Jie Cheng, Christos Hatzis, Hisashi Hayashi, Mark-A. Krogel, Shinichi Morishita, David Page, Jun Sese
2002 B conf
Practical Software for Aligning ESTs to Human Genome.
CPM
Jun Ogasawara, Shinichi Morishita
2002 J jnl
The Gene Resource Locator: gene locus maps for transcriptome analysis.
Nucleic Acids Res.
Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada, Shinichi Morishita
2001 J jnl
BodyMap incorporated PCR-based expression profiling data and a gene ranking system.
Nucleic Acids Res.
Jun Sese, Hitoshi Nikaidou, Shoko Kawamoto, Yuichi Minesaki, Shinichi Morishita, Kousaku Okubo
2001 J jnl
Data Mining with optimized two-dimensional association rules.
ACM Trans. Database Syst.
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
2001 J jnl
Efficient Construction of Regression Trees with Range and Region Splitting.
Mach. Learn.
Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita
2000 J jnl
BodyMap: a human and mouse gene expression database.
Nucleic Acids Res.
Teruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita, Kousaku Okubo
2000 B ed.
Discovery Science, Third International Conference, DS 2000, Kyoto, Japan, December 4-6, 2000, Proceedings
Discovery Science
Setsuo Arikawa, Shinichi Morishita
2000 A* conf
Traversing Itemset Lattice with Statistical Metric Pruning.
PODS
Shinichi Morishita, Jun Sese
1999 J jnl
Mining Optimized Association Rules for Numeric Attributes.
J. Comput. Syst. Sci.
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
1999 — conf
Parallel Branch-and-Bound Graph Search for Correlated Association Rules.
Large-Scale Parallel Data Mining
Shinichi Morishita, Akihiro Nakaya
1999 — conf
Towards Mining Gene Expression Database.
1999 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery
Shinichi Morishita, Teruyoshi Hishiki, Kousaku Okubo
1999 B conf
Weighted Majority Decision among Region Rules for a Categorical Dataset.
Discovery Science
Akihiro Nakaya, Shinichi Morishita
1999 B conf
Weighted Majority Decision among Several Region Rules for Scientific Discovery.
Discovery Science
Akihiro Nakaya, Hideharu Furukawa, Shinichi Morishita
1998 B conf
On Classification and Regression.
Discovery Science
Shinichi Morishita
1997 J jnl
Avoiding Cartesian products for multiple joins.
J. ACM
Shinichi Morishita
1997 A* conf
Computing Optimized Rectilinear Regions for Association Rules.
KDD
Kunikazu Yoda, Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
1997 A* conf
Efficient Construction of Regression Trees with Range and Region Splitting.
VLDB
Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita
1996 J jnl
An Extension of Van Gelder's Alternating Fixpoint to Magic Programs.
J. Comput. Syst. Sci.
Shinichi Morishita
1996 A* conf
Constructing Efficient Decision Trees by Using Optimized Numeric Association Rules.
VLDB
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
1996 — conf
Data Mining Using Two-Dimensional Optimized Accociation Rules: Scheme, Algorithms, and Visualization.
SIGMOD Conference
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
1996 B conf
Interval Finding and Its Application to Data Mining.
ISAAC
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
1996 A* conf
Mining Optimized Association Rules for Numeric Attributes.
PODS
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
1996 — conf
SONAR: System for Optimized Numeric AssociationRules.
SIGMOD Conference
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
1994 J jnl
The Glue-Nail Deductive Database System: Design, Implementation, and Evaluation
VLDB J.
Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps
1993 A* conf
An Alternating Fixpoint Tailored to Magic Programs.
PODS
Shinichi Morishita
1993 — conf
Design and Implementation of the Glue-Nail Database System.
SIGMOD Conference
Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps
1992 — conf
An anternating fixpoint tailored to magic programs.
Workshop on Deductive Databases, JICSLP
Shinichi Morishita
1992 A* conf
Avoiding Cartesian Products in Programs for Multiple Joins.
PODS
Shinichi Morishita
1988 — conf
Lattice Programming Methodology.
LP
Kouichi Fukunaga, Shinichi Morishita
1987 B conf
Symbolical Construction of Truth Value Domain for Logic Program.
ICLP
Shinichi Morishita, Masayuki Numao, Shin'ichi Hirose
1986 — conf
Prolog Computation Model BPM and its Debugger PROEDIT2.
LP
Shinichi Morishita, Masayuki Numao