Shilin Zhao - RankMe

57 papers A* 3B 1Journal 43Unranked 10

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Explainable Pathomics Feature Visualization via Correlation-aware Conditional Feature Editing. CoRR Yuechen Yang, Junlin Guo, Ruining Deng, Junchao Zhu, Zhengyi Lu, Chongyu Qu, Yanfan Zhu, Xingyi Guo, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2026	J	`jnl`	Square Superpixel Generation and Representation Learning via Granular Ball Computing. CoRR Shuyin Xia, Meng Yang, Dawei Dai, Fan Chen, Shilin Zhao, Junwei Han, Xinbo Gao, Guoyin Wang, Wen Lu
2025	A*	`conf`	ASIGN: An Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics. CVPR Junchao Zhu, Ruining Deng, Tianyuan Yao, Juming Xiong, Chongyu Qu, Junlin Guo, Siqi Lu, Mengmeng Yin, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2025	J	`jnl`	Evaluating New AI Cell Foundation Models on Challenging Kidney Pathology Cases Unaddressed by Previous Foundation Models. CoRR Runchen Wang, Junlin Guo, Siqi Lu, Ruining Deng, Zhengyi Lu, Yanfan Zhu, Yuechen Yang, Chongyu Qu, Yu Wang, Shilin Zhao, Catie Chang, D. Mitchell Wilkes, Mengmeng Yin, Haichun Yang, Yuankai Huo
2025	J	`jnl`	Fault localization using sliding adaptive data segmentation and improved k-nearest neighbour with application to railway track circuits. Comput. Electr. Eng. Shilin Zhao, Guangwu Chen, Peng Li, Jianqiang Shi, Vyacheslav Potekhin
2025	A*	`conf`	From Sparse to Complete: Semantic Understanding Based on Stroke Evolution in On-the-fly Sketch-based Image Retrieval. IJCAI Yingge Liu, Dawei Dai, Xiangling Hou, Shilin Zhao, Guoyin Wang
2025	J	`jnl`	HistoWAS: A Pathomics Framework for Large-Scale Feature-Wide Association Studies of Tissue Topology and Patient Outcomes. CoRR Yuechen Yang, Junlin Guo, Yanfan Zhu, Jialin Yue, Junchao Zhu, Yu Wang, Shilin Zhao, Haichun Yang, Xingyi Guo, Jovan Tanevski, Laura Barisoni, Avi Z. Rosenberg, Yuankai Huo
2025	J	`jnl`	How Close Are We? Limitations and Progress of AI Models in Banff Lesion Scoring. CoRR Yanfan Zhu, Juming Xiong, Ruining Deng, Yu Wang, Yaohong Wang, Shilin Zhao, Mengmeng Yin, Yuqing Liu, Haichun Yang, Yuankai Huo
2025	J	`jnl`	IRS: Incremental Relationship-guided Segmentation for Digital Pathology. CoRR Ruining Deng, Junchao Zhu, Juming Xiong, Can Cui, Tianyuan Yao, Junlin Guo, Siqi Lu, Marilyn Lionts, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Yihe Yang, Paul Dennis Simonson, Mert R. Sabuncu, Haichun Yang, Yuankai Huo
2025	J	`jnl`	Img2ST-Net: Efficient High-Resolution Spatial Omics Prediction from Whole Slide Histology Images via Fully Convolutional Image-to-Image Learning. CoRR Junchao Zhu, Ruining Deng, Junlin Guo, Tianyuan Yao, Juming Xiong, Chongyu Qu, Mengmeng Yin, Yu Wang, Shilin Zhao, Haichun Yang, Daguang Xu, Yucheng Tang, Yuankai Huo
2025	J	`jnl`	KPIs 2024 Challenge: Advancing Glomerular Segmentation from Patch- to Slide-Level. CoRR Ruining Deng, Tianyuan Yao, Yucheng Tang, Junlin Guo, Siqi Lu, Juming Xiong, Lining Yu, Quan Huu Cap, Pengzhou Cai, Libin Lan, Ze Zhao, Adrian Galdran, Amit Kumar, Gunjan Deotale, Dev Kumar Das, Inyoung Paik, Joonho Lee, Geongyu Lee, Yujia Chen, Wangkai Li, Zhaoyang Li, Xuege Hou, Zeyuan Wu, Shengjin Wang, Maximilian Fischer, Lars Kramer, Anghong Du, Le Zhang, Maria Sanchez Sanchez, Helena Sanchez Ulloa, David Ribalta Heredia, Carlos Perez de Arenaza Garcia, Shuoyu Xu, Bingdou He, Xinping Cheng, Tao Wang, Noémie Moreau, Katarzyna Bozek, Shubham Innani, Ujjwal Baid, Kaura Solomon Kefas, Bennett A. Landman, Yu Wang, Shilin Zhao, Mengmeng Yin, Haichun Yang, Yuankai Huo
2025	J	`jnl`	MagNet: Multi-Level Attention Graph Network for Predicting High-Resolution Spatial Transcriptomics. CoRR Junchao Zhu, Ruining Deng, Tianyuan Yao, Juming Xiong, Chongyu Qu, Junlin Guo, Siqi Lu, Yucheng Tang, Daguang Xu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yaohong Wang, Haichun Yang, Yuankai Huo
2025	J	`jnl`	MedFoundationHub: A Lightweight and Secure Toolkit for Deploying Medical Vision Language Foundation Models. CoRR Xiao Li, Yanfan Zhu, Ruining Deng, Wei-Qi Wei, Yu Wang, Shilin Zhao, Yaohong Wang, Haichun Yang, Yuankai Huo
2025	J	`jnl`	PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit. CoRR Yuechen Yang, Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao, Haichun Yang, Yuankai Huo
2025	J	`jnl`	SCR2-ST: Combine Single Cell with Spatial Transcriptomics for Efficient Active Sampling via Reinforcement Learning. CoRR Junchao Zhu, Ruining Deng, Junlin Guo, Tianyuan Yao, Chongyu Qu, Juming Xiong, Siqi Lu, Zhengyi Lu, Yanfan Zhu, Marilyn Lionts, Yuechen Yang, Yalin Zheng, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2025	J	`jnl`	The improved mountain gazelle optimizer for spatiotemporal support vector regression: a novel method for railway subgrade settlement prediction integrating multi-source information. Appl. Intell. Guangwu Chen, Shilin Zhao, Peng Li, Shilin Wang, Xin Zhou, Vyacheslav Potekhin
2025	J	`jnl`	stImage: a versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration. Briefings Bioinform. Yu Wang, Haichun Yang, Ruining Deng, Yuankai Huo, Qi Liu, Yu Shyr, Shilin Zhao
2024	J	`jnl`	ASIGN: An Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics. CoRR Junchao Zhu, Ruining Deng, Tianyuan Yao, Juming Xiong, Chongyu Qu, Junlin Guo, Siqi Lu, Mengmeng Yin, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2024	J	`jnl`	Adapting Mouse Pathological Model to Human Glomerular Lesion Segmentation. CoRR Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2024	J	`jnl`	Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology. CoRR Junchao Zhu, Mengmeng Yin, Ruining Deng, Yitian Long, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2024	J	`jnl`	Glo-In-One-v2: Holistic Identification of Glomerular Cells, Tissues, and Lesions in Human and Mouse Histopathology. CoRR Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui, Junlin Guo, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2024	—	`conf`	HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis. MICCAI (4) Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo
2024	J	`jnl`	HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis. CoRR Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo
2024	J	`jnl`	How Good Are We? Evaluating Cell AI Foundation Models in Kidney Pathology with Human-in-the-Loop Enrichment. CoRR Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao, Yizhe Lin, Marilyn Lionts, Quan Liu, Juming Xiong, Yu Wang, Shilin Zhao, Catie Chang, D. Mitchell Wilkes, Mengmeng Yin, Haichun Yang, Yuankai Huo
2024	A*	`conf`	PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation. CVPR Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong, Lining Yu, Yifei Wu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo
2024	J	`jnl`	PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation. CoRR Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong, Lining Yu, Yifei Wu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo
2023	J	`jnl`	Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers. CoRR Muhao Liu, Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
2023	J	`jnl`	Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation. IEEE Trans. Biomed. Eng. Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo
2023	J	`jnl`	Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging. CoRR Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Lee E. Wheless, Lori A. Coburn, Keith T. Wilson, Yaohong Wang, Shilin Zhao, Agnes B. Fogo, Haichun Yang, Yucheng Tang, Yuankai Huo
2023	J	`jnl`	Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology. CoRR Jiayuan Chen, Yu Wang, Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Yilin Liu, Jianyong Zhong, Agnes B. Fogo, Haichun Yang, Shilin Zhao, Yuankai Huo
2022	J	`jnl`	Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data. Briefings Bioinform. Shih-Kai Chu, Shilin Zhao, Yu Shyr, Qi Liu
2022	J	`jnl`	Deep Multi-modal Fusion of Image and Non-image Data in Disease Diagnosis and Prognosis: A Review. CoRR Can Cui, Haichun Yang, Yaohong Wang, Shilin Zhao, Zuhayr Asad, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo
2022	B	`conf`	Integrate memory efficiency methods for self-supervised learning on pathological image analysis. Image Processing Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
2022	—	`conf`	MAG: A Simple Learning-Based Patient-Level Aggregation Method for Detecting Microsatellite Instability from Whole-Slide Images. ISBI Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo
2022	J	`jnl`	MAg: a simple learning-based patient-level aggregation method for detecting microsatellite instability from whole-slide images. CoRR Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo
2022	—	`conf`	Multi-modal learning with missing data for cancer diagnosis using histopathological and genomic data. Computer-Aided Diagnosis Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
2022	J	`jnl`	Multimodality in meta-learning: A comprehensive survey. Knowl. Based Syst. Yao Ma, Shilin Zhao, Weixiao Wang, Yaoman Li, Irwin King
2022	J	`jnl`	Omni-Seg+: A Scale-aware Dynamic Network for Pathological Image Segmentation. CoRR Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo
2022	J	`jnl`	Partial Discharge Localization on Power Cables Based on a Novel Signal Relay System. IEEE Trans. Instrum. Meas. Kai Zhou, Yao Fu, Guangya Zhu, Shilin Zhao, Lu Lu, Xianjin Wang, Yuan Li, Pengfei Meng, Shiyu Ma
2022	—	`conf`	Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data. MICCAI (5) Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
2022	J	`jnl`	Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Demographic Data. CoRR Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
2022	—	`conf`	Ultra-Low-Loss Graphene Coated Optical Fiber Polarizer with PMMA Enhancement. OECC/PSC Jianwei Li, Xinwei Deng, Shilin Zhao, Ziyu Wang, Xinyue Wang
2021	J	`jnl`	BEDS: Bagging ensemble deep segmentation for nucleus segmentation with testing stage stain augmentation. CoRR Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
2021	—	`conf`	Beds: Bagging Ensemble Deep Segmentation For Nucleus Segmentation With Testing Stage Stain Augmentation. ISBI Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
2021	J	`jnl`	Multimodality in Meta-Learning: A Comprehensive Survey. CoRR Yao Ma, Shilin Zhao, Weixiao Wang, Yaoman Li, Irwin King
2021	—	`conf`	SimTriplet: Simple Triplet Representation Learning with a Single GPU. MICCAI (2) Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
2021	J	`jnl`	SimTriplet: Simple Triplet Representation Learning with a Single GPU. CoRR Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
2020	J	`jnl`	Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats. PLoS Comput. Biol. Hui Yu, Shilin Zhao, Scott Ness, Huining Kang, Quanhu Sheng, David C. Samuels, Olufunmilola Oyebamiji, Ying-Yong Zhao, Yan Guo
2019	—	`conf`	Traffic Classification and Application Identification Based on Machine Learning in Large-Scale Supercomputing Center. HPCC/SmartCity/DSS Shilin Zhao, Kejiang Ye, Cheng-Zhong Xu
2018	J	`jnl`	RnaSeqSampleSize: real data based sample size estimation for RNA sequencing. BMC Bioinform. Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr
2018	J	`jnl`	Strategies for processing and quality control of Illumina genotyping arrays. Briefings Bioinform. Shilin Zhao, Jing Wang, David C. Samuels, Quanghu Sheng, Yu Shyr, Yan Guo
2017	—	`conf`	Facial Expression Recognition Algorithm Based on CNN and LBP Feature Fusion. ICRAI Xinli Yang, Ming Li, Shilin Zhao
2017	—	`conf`	Robust Object Tracking Based on Collaborative Sparse Representation of Multifeature. ICRAI Shilin Zhao, Ming Li, Xinli Yang
2015	J	`jnl`	NGSPERL: a semi-automated framework for large scale next generation sequencing data analysis. Int. J. Comput. Biol. Drug Des. Quanhu Sheng, Shilin Zhao, Mingsheng Guo, Yu Shyr
2014	J	`jnl`	Detection of internal exon deletion with exon Del. BMC Bioinform. Yan Guo, Shilin Zhao, Brian D. Lehmann, Quanhu Sheng, Timothy M. Shaver, Thomas Stricker, Jennifer A. Pietenpol, Yu Shyr
2014	J	`jnl`	Heatmap3: an improved heatmap package with more powerful and convenient features. BMC Bioinform. Shilin Zhao, Yan Guo, Quanhu Sheng, Yu Shyr
2013	J	`jnl`	Gene and isoform expression signatures associated with tumor stage in kidney renal clear cell carcinoma. BMC Syst. Biol. Qi Liu, Shilin Zhao, Pei-Fang Su, Shyr Yu