Shigehiko Kanaya

80 papers C 3Journal 42Unranked 34
YearRankTypeTitle / Venue / Authors
2025 — conf
An Approach to Identify Mechanism of Actions of Predicted Natural Antibiotics.
BIBM
Muhammad Hendrick Sedayu, Ahmad Kamal Nasution, Mahfujul Islam Rumman, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2025 J jnl
Flexible variational information bottleneck: Achieving diverse compression with a single training.
Neurocomputing
Sota Kudo, Naoaki Ono, Shigehiko Kanaya, Ming Huang
2024 J jnl
Exploring the Trade-Off in the Variational Information Bottleneck for Regression with a Single Training Run.
Entropy
Sota Kudo, Naoaki Ono, Shigehiko Kanaya, Ming Huang
2024 J jnl
Flexible Variational Information Bottleneck: Achieving Diverse Compression with a Single Training.
CoRR
Sota Kudo, Naoaki Ono, Shigehiko Kanaya, Ming Huang
2024 — conf
No-Reference Blurred Image Detection from Colonoscopy Videos Using Walsh-Hadamard Transform and Kolmogorov Smirnov Test.
IST
Md. Shakhaout Hossain, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2023 — conf
Investigating Potential Natural Antibiotics Plants Based on Unani Formula Using Supervised Network Analysis and Machine Learning Approach.
BIBM
Ahmad Kamal Nasution, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2023 J jnl
Learning vector quantized representation for cancer subtypes identification.
Comput. Methods Programs Biomed.
Zheng Chen, Ziwei Yang, Lingwei Zhu, Peng Gao, Takashi Matsubara, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2023 J jnl
Pre-training of Molecular GNNs as Conditional Boltzmann Generator.
CoRR
Daiki Koge, Naoaki Ono, Shigehiko Kanaya
2023 — conf
Utilizing Contrastive Predictive Coding for the Detection of Epilepsy in EEG Data.
GCCE
Zihang Wang, Guangxian Zhu, Haohui Jia, Kenta T. Suzuki, Dafang Zhao, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2023 J jnl
Variational Autoencoding Molecular Graphs with Denoising Diffusion Probabilistic Model.
CoRR
Daiki Koge, Naoaki Ono, Shigehiko Kanaya
2022 — conf
A Stochastic Coding Method of EEG Signals for Sleep Stage Classification.
SOCC
Guangxian Zhu, Huijia Wang, Yirong Kan, Zheng Chen, Ming Huang, Md. Altaf-Ul-Amin, Naoaki Ono, Shigehiko Kanaya, Renyuan Zhang, Yasuhiko Nakashima
2022 — conf
Algorithm Cocktail Approach for Predicting Body Constitution and Bias Recovery.
LifeTech
Guang Shi, Zheng Chen, Ming Huang, Renyuan Zhang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 J jnl
Cancer Subtyping by Improved Transcriptomic Features Using Vector Quantized Variational Autoencoder.
CoRR
Zheng Chen, Ziwei Yang, Lingwei Zhu, Guang Shi, Kun Yue, Takashi Matsubara, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2022 — conf
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data.
EMBC
Ziwei Yang, Lingwei Zhu, Zheng Chen, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 J jnl
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data.
CoRR
Ziwei Yang, Lingwei Zhu, Zheng Chen, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 J jnl
Clustering analysis of soil microbial community at global scale.
Int. J. Bioinform. Res. Appl.
Tetsushi Tanaka, André Freire Cruz, Naoaki Ono, Shigehiko Kanaya
2022 — conf
Deep Learning-Based Sleep Staging with Acceleration and Heart Rate Data of a Consumer Wearable Device.
LifeTech
Sota Kudo, Zheng Chen, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
2022 J jnl
Enhancement on Model Interpretability and Sleep Stage Scoring Performance with A Novel Pipeline Based on Deep Neural Network.
CoRR
Zheng Chen, Ziwei Yang, Ming Huang, Toshiyo Tamura, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 — conf
Feature Extraction and Unsupervised Clustering of Histopathological Images of Pancreatic Cancer Using Information Maximization.
GCCE
Mahfujul Islam Rumman, Naoaki Ono, Kenoki Ohuchida, Md. Altaf-Ul-Amin, Ming Huang, Shigehiko Kanaya
2022 — conf
Hierarchical Categorical Generative Modeling for Multi-omics Cancer Subtyping.
BIBM
Ziwei Yang, Lingwei Zhu, Chen Li, Zheng Chen, Naoki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 C conf
Prediction of Potential Natural Antibiotics based on Jamu Formula Using Machine Learning Approach.
BIBE
Ahmad Kamal Nasution, Sony Hartono Wijaya, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2022 — conf
Reconciling of the distances in physical space and latent feature space for complex activity modeling.
LifeTech
Yongxin Zhang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
2022 — conf
Straightforward Clustering and Identification of Morphological-Level Pancreatic Carcinoma.
GCCE
Guangxian Zhu, Huijia Wang, Ming Huang, Md. Altaf-Ul-Amin, Naoaki Ono, Shigehiko Kanaya
2021 J jnl
A Real-Time Portable IoT System for Telework Tracking.
Frontiers Digit. Health
Yongxin Zhang, Zheng Chen, Haoyu Tian, Koshiro Kido, Naoaki Ono, Wei Chen, Toshiyo Tamura, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
2021 — conf
An Approach to Construct and Validate TCM Dataset Effective against Bacterial Pneumonia.
LifeTech
Pei Gao, Zheng Chen, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2021 — conf
An End-to-End Sleep Staging Simulator Based on Mixed Deep Neural Networks.
BIBM
Zheng Chen, Ziwei Yang, Dong Wang, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2021 — conf
An Integrated Multi-Omics Approach for AMR Phenotype Prediction of Gut Microbiota.
BIBM
Pei Gao, Zheng Chen, Dong Wang, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2021 J jnl
DPClusSBO: An integrated software for clustering of simple and bipartite graphs.
SoftwareX
Mohammad Bozlul Karim, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2021 J jnl
Development of a biomarker database toward performing disease classification and finding disease interrelations.
Database J. Biol. Databases Curation
Shaikh Farhad Hossain, Ming Huang, Naoaki Ono, Aki Morita, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2021 — conf
Exploring Feasibility of Truth-Involved Automatic Sleep Staging Combined with Transformer.
BIBM
Ziwei Yang, Dong Wang, Zheng Chen, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2021 — conf
Feasibility Analysis of Symbolic Representation for Single-Channel EEG-Based Sleep Stages.
EMBC
Zheng Chen, Pei Gao, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2021 J jnl
Kinematics approach with neural networks for early detection of sepsis (KANNEDS).
BMC Medical Informatics Decis. Mak.
Márcio Freire Cruz, Naoaki Ono, Ming Huang, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Carlos Arthur Mattos Teixeira Cavalcante
2021 — conf
Prediction of Body Constitutions through Life-Style for Health Guidance.
LifeTech
Guang Shi, Zheng Chen, Shigehiko Kanaya, Md. Altaf-Ul-Amin, Naoaki Ono, Ming Huang
2021 J jnl
The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals.
Comput. Methods Programs Biomed.
Zheng Chen, Naoaki Ono, Wei Chen, Toshiyo Tamura, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
2020 J jnl
BiClusO: A Novel Biclustering Approach and Its Application to Species-VOC Relational Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Mohammad Bozlul Karim, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2020 — conf
iVAE: An Improved Deep Learning Structure for EEG Signal Characterization and Reconstruction.
BIBM
Zheng Chen, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
2019 J jnl
A Novel CNN-Based Framework for Classification of Signal Quality and Sleep Position from a Capacitive ECG Measurement.
Sensors
Koshiro Kido, Toshiyo Tamura, Naoaki Ono, Md. Altaf-Ul-Amin, Masaki Sekine, Shigehiko Kanaya, Ming Huang
2019 — conf
Cardiotoxicity Prediction Based on Integreted hERG Database with Molecular Convolution Model.
BIBM
Jieying Hu, Ming Huang, Naoaki Ono, Ye Chen-Izu, Leighton T. Izu, Shigehiko Kanaya
2019 J jnl
Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks.
BMC Bioinform.
Ryohei Eguchi, Naoaki Ono, Aki Hirai, Tetsuo Katsuragi, Satoshi Nakamura, Ming Huang, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2019 J jnl
Implementation of BiClusO and its comparison with other biclustering algorithms.
Appl. Netw. Sci.
Mohammad Bozlul Karim, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2019 C conf
Inter Disease Relations Based on Human Biomarkers by Network Analysis.
BIBE
Shaikh Farhad Hossain, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2019 — ch.
Investigating Metabolic Pathways and Networks.
Encyclopedia of Bioinformatics and Computational Biology (3)
Md. Altaf-Ul-Amin, Shigehiko Kanaya, Zeti-Azura Mohamed-Hussein
2019 — conf
The Feasibility of Arrhythmias Detection from A Capacitive ECG Measurement Using Convolutional Neural Network.
EMBC
Koshiro Kido, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
2018 J jnl
An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease.
BMC Bioinform.
Ryohei Eguchi, Mohammad Bozlul Karim, Pingzhao Hu, Tetsuo Sato, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2018 J jnl
Classification of lung adenocarcinoma transcriptome subtypes from pathological images using deep convolutional networks.
Int. J. Comput. Assist. Radiol. Surg.
Victor Andrew A. Antonio, Naoaki Ono, Akira Saito, Tetsuo Sato, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2018 — conf
Comparison of BiClusO with Five Different Biclustering Algorithms Using Biological and Synthetic Data.
COMPLEX NETWORKS (2)
Mohammad Bozlul Karim, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2018 — conf
Feature extraction and Cluster analysis of Pancreatic Pathological Image Based on Unsupervised Convolutional Neural Network.
BIBM
Konosuke Asanou, Naoaki Ono, Chika Iwamoto, Kenoki Ohuchida, Koji Shindo, Shigehiko Kanaya
2018 — conf
Power Spectral Analysis of Short-Term Blood Pressure Recordings for Assessing Daily Variations of Blood Pressure in Human.
EMBC
Hiroyuki Kinoshita, Hiroshi Mannoji, Keita Saku, Jumpei Mano, Tadayoshi Miyamoto, Koji Todaka, Takuya Kishi, Shigehiko Kanaya, Kenji Sunagawa
2018 C conf
Prediction of Plant-Disease Relations Based on Unani Formulas by Network Analysis.
BIBE
Shaikh Farhad Hossain, Sony Hartono Wijaya, Ming Huang, Irmanida Batubara, Shigehiko Kanaya, Md. Altaf-Ul-Amin Farhad
2018 J jnl
UC2 search: using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics.
Bioinform.
Nozomu Sakurai, Takafumi Narise, Joon-Soo Sim, Chang-Muk Lee, Chiaki Ikeda, Nayumi Akimoto, Shigehiko Kanaya
2017 J jnl
A Chair-Based Unobtrusive Cuffless Blood Pressure Monitoring System Based on Pulse Arrival Time.
IEEE J. Biomed. Health Informatics
Zunyi Tang, Toshiyo Tamura, Masaki Sekine, Ming Huang, Wenxi Chen, Masaki Yoshida, Kaoru Sakatani, Hiroshi Kobayashi, Shigehiko Kanaya
2017 J jnl
A Wearable Thermometry for Core Body Temperature Measurement and Its Experimental Verification.
IEEE J. Biomed. Health Informatics
Ming Huang, Toshiyo Tamura, Zunyi Tang, Wenxi Chen, Shigehiko Kanaya
2016 J jnl
Finding an appropriate equation to measure similarity between binary vectors: case studies on Indonesian and Japanese herbal medicines.
BMC Bioinform.
Sony Hartono Wijaya, Farit Mochamad Afendi, Irmanida Batubara, Latifah K. Darusman, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2016 J jnl
Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles.
J. Biomed. Informatics
Nelson Kibinge, Naoaki Ono, Masafumi Horie, Tetsuo Sato, Tadao Sugiura, Md. Altaf-Ul-Amin, Akira Saito, Shigehiko Kanaya
2016 J jnl
Structural Optimization of a Wearable Deep Body Thermometer: From Theoretical Simulation to Experimental Verification.
J. Sensors
Ming Huang, Toshiyo Tamura, Zunyi Tang, Wenxi Chen, Shigehiko Kanaya
2016 — conf
Wearable deep body thermometers and their uses in continuous monitoring for daily healthcare.
EMBC
Ming Huang, Toshiyo Tamura, Takumi Yoshimura, Tadahiro Tsuchikawa, Shigehiko Kanaya
2015 — conf
Evaluation of a noninvasive deep body thermometer in measurement of specific positions.
EMBC
Ming Huang, Toshiyo Tamura, Wenxi Chen, Naoaki Ono, Tetsuo Sato, Shigehiko Kanaya
2014 J jnl
A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network.
BMC Syst. Biol.
Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Shigehiko Kanaya, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Eberhard O. Voit, Fumihide Shiraishi, Masami Y. Hirai
2014 — conf
Characterization of ultradian and circadian rhythms of core body temperature based on wavelet analysis.
EMBC
Ming Huang, Toshiyo Tamura, Wenxi Chen, Keiichiro Kitamura, Tetsu Nemoto, Shigehiko Kanaya
2014 — conf
Geometrical Improvement of a Noninvasive Core Temperature Thermometer based on Numeric Modeling and Experiment Validation.
BIODEVICES
Ming Huang, Toshiyo Tamura, Wenxi Chen, Keiichiro Kitamura, Tetsu Nemoto, Shigehiko Kanaya
2014 J jnl
KEGGscape: a Cytoscape app for pathway data integration.
F1000Research
Kozo Nishida, Keiichiro Ono, Shigehiko Kanaya, Koichi Takahashi
2013 J jnl
An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values.
Bioinform.
Nozomu Sakurai, Takeshi Ara, Shigehiko Kanaya, Yukiko Nakamura, Yoko Iijima, Mitsuo Enomoto, Takeshi Motegi, Koh Aoki, Hideyuki Suzuki, Daisuke Shibata
2012 J jnl
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset.
BMC Syst. Biol.
Shingo Kikugawa, Kensaku Nishikata, Katsuhiko Murakami, Yoshiharu Sato, Mami Suzuki, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Tadashi Imanishi
2011 J jnl
AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS.
BMC Bioinform.
Hiroki Takahashi, Takuya Morimoto, Naotake Ogasawara, Shigehiko Kanaya
2011 J jnl
Genome-wide binding profiles of the
Nucleic Acids Res.
Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
2011 J jnl
tRNADB-CE 2011: tRNA gene database curated manually by experts.
Nucleic Acids Res.
Takashi Abe, Toshimichi Ikemura, Junichi Sugahara, Akio Kanai, Yasuo Ohara, Hiroshi Uehara, Makoto Kinouchi, Shigehiko Kanaya, Yuko Yamada, Akira Muto, Hachiro Inokuchi
2010 — conf
System Biology Approach for Elucidating the Relationship Between Indonesian Herbal Plants and the Efficacy of Jamu.
ICDM Workshops
Farit Mochamad Afendi, Latifah K. Darusman, Aki Hirai, Md. Altaf-Ul-Amin, Hiroki Takahashi, Kensuke Nakamura, Shigehiko Kanaya
2009 — conf
A Large-Scale Genomics Studies Conducted with Batch-Learning SOM Utilizing High-Performance Supercomputers.
IWANN (1)
Takashi Abe, Yuta Hamano, Shigehiko Kanaya, Ken-nosuke Wada, Toshimichi Ikemura
2009 — conf
Batch-Learning Self-Organizing Map for Predicting Functions of Poorly-Characterized Proteins Massively Accumulated.
WSOM
Takashi Abe, Shigehiko Kanaya, Toshimichi Ikemura
2009 — conf
Ontology Checking and Integration of Crude-Drug and Kampo Information.
BMEI
Masanori Arita, Kazuhiro Suwa, Miwa Yoshimoto, Aki Hirai, Shigehiko Kanaya
2009 — conf
Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations.
GCB
Hisayuki Horai, Masanori Arita, Yuya Ojima, Yoshito Nihei, Shigehiko Kanaya, Takeshi Nishioka
2009 J jnl
tRNADB-CE: tRNA gene database curated manually by experts.
Nucleic Acids Res.
Takashi Abe, Toshimichi Ikemura, Yasuo Ohara, Hiroshi Uehara, Makoto Kinouchi, Shigehiko Kanaya, Yuko Yamada, Akira Muto, Hachiro Inokuchi
2007 J jnl
Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms.
Inf. Media Technol.
Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya
2007 J jnl
Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships.
Inf. Media Technol.
Hijiri Maeno, Md. Altaf-Ul-Amin, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
2007 J jnl
Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model.
BMC Bioinform.
Ryoko Morioka, Shigehiko Kanaya, Masami Y. Hirai, Mitsuru Yano, Naotake Ogasawara, Kazuki Saito
2006 J jnl
Development and implementation of an algorithm for detection of protein complexes in large interaction networks.
BMC Bioinform.
Md. Altaf-Ul-Amin, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya
2005 J jnl
Accurate extraction of functional associations between proteins based on common interaction partners and common domains.
Bioinform.
Kinya Okada, Shigehiko Kanaya, Kiyoshi Asai
2005 — conf
Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach.
ICDE Workshops
Md. Altaf-Ul-Amin, Toshihiro Koma, Ken Kurokawa, Shigehiko Kanaya
1996 J jnl
Condon usage tabulated from the international DNA sequence databases.
Nucleic Acids Res.
Yasukazu Nakamura, Ken-nosuke Wada, Yoshiko Wada, Hirofumi Doi, Shigehiko Kanaya, Takashi Gojobori, Toshimichi Ikemura
1996 J jnl
Detection of genes in Escherichia coli sequences determined by genome projects and prediction of protein production levels, based on multivariate diversity in codon usage.
Comput. Appl. Biosci.
Shigehiko Kanaya, Yoshihiro Kudo, Yasukazu Nakamura, Toshimichi Ikemura