Shi-Hua Zhang

27 papers Journal 18Unranked 8
YearRankTypeTitle / Venue / Authors
2016 J jnl
L0-norm Sparse Graph-regularized SVD for Biclustering.
CoRR
Wenwen Min, Juan Liu, Shi-Hua Zhang
2015 — conf
A novel two-stage method for identifying microRNA-gene regulatory modules in breast cancer.
BIBM
Wenwen Min, Juan Liu, Fei Luo, Shi-Hua Zhang
2015 J jnl
Guest Editorial for Special Section on ISB/TBC 2014.
IEEE ACM Trans. Comput. Biol. Bioinform.
Shi-Hua Zhang, Luonan Chen
2015 J jnl
IIIDB: a database for isoform-isoform interactions and isoform network modules.
BMC Genom.
Yu-Ting Tseng, Wenyuan Li, Ching-Hsien Chen, Shi-Hua Zhang, Jeremy J. W. Chen, Xianghong Jasmine Zhou, Chun-Chi Liu
2015 J jnl
Infer Metagenomic Abundance and Reveal Homologous Genomes Based on the Structure of Taxonomy Tree.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yu-Qing Qiu, Xue Tian, Shi-Hua Zhang
2015 J jnl
Quantitative Function and Algorithm for Community Detection in Bipartite Networks.
CoRR
Zhen-Ping Li, Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang
2013 J jnl
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data.
BMC Syst. Biol.
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang
2012 J jnl
Efficient methods for identifying mutated driver pathways in cancer.
Bioinform.
Junfei Zhao, Shi-Hua Zhang, Ling-Yun Wu, Xiang-Sun Zhang
2012 J jnl
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.
Bioinform.
Wenyuan Li, Shi-Hua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou
2012 — conf
Identifying mutated core modules in glioblastoma by integrative network analysis.
ISB
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang
2011 — conf
A Querying Method with Feedback Mechanism for Protein Interaction Network.
HISB
Jiang Xie, Shi-Hua Zhang, Tieqiao Wen, Guangtai Ding, Shu Yu, Zhili Gu, Wu Zhang
2011 J jnl
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules.
Bioinform.
Shi-Hua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou
2011 J jnl
Co-community Structure in Multiple Evolving Networks
CoRR
Shi-Hua Zhang, Junfei Zhao, Xiang-Sun Zhang
2010 J jnl
A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps.
Bioinform.
Shi-Hua Zhang, Daven Vasishtan, Min Xu, Maya Topf, Frank Alber
2010 J jnl
Detecting disease associated modules and prioritizing active genes based on high throughput data.
BMC Bioinform.
Yu-Qing Qiu, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Determining modular organization of protein interaction networks by maximizing modularity density.
BMC Syst. Biol.
Shi-Hua Zhang, Xue-Mei Ning, Chris H. Q. Ding, Xiang-Sun Zhang
2009 — conf
3D Rotation Invariant Features for the Characterization of Molecular Density Maps.
BIBM
Min Xu, Shi-Hua Zhang, Frank Alber
2009 — conf
A Method for Querying Conserved Subnetwork in a Large-Scale Biomolecular Network.
HPCA (China)
Jiang Xie, Weibing Feng, Shi-Hua Zhang, Songbei Li, Guoyong Mao, Luwen Zhang, Tieqiao Wen, Wu Zhang
2009 J jnl
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.
Int. J. Data Min. Bioinform.
Shi-Hua Zhang, Hongwei Liu, Xue-Mei Ning, Xiang-Sun Zhang
2009 J jnl
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
PLoS Comput. Biol.
Jiguang Wang, Shi-Hua Zhang, Yong Wang, Luonan Chen, Xiang-Sun Zhang
2009 — ch.
Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks.
Fuzzy Systems in Bioinformatics and Computational Biology
Shi-Hua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures.
Neurocomputing
Rui-Sheng Wang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
Alignment of molecular networks by integer quadratic programming.
Bioinform.
Zhen-Ping Li, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 — conf
Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks.
ICIC (2)
Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen
2006 — conf
A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.
ICDM Workshops
Shi-Hua Zhang, Hongwei Liu, Xue-Mei Ning, Xiang-Sun Zhang
2006 J jnl
Identification of functional modules in a PPI network by clique percolation clustering.
Comput. Biol. Chem.
Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang
2006 — conf
Prediction of Protein Complexes Based on Protein Interaction Data and Functional Annotation Data Using Kernel Methods.
ICIC (3)
Shi-Hua Zhang, Xue-Mei Ning, Hongwei Liu, Xiang-Sun Zhang