Sheng-Da Hsu

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2018 J jnl
The aquatic animals' transcriptome resource for comparative functional analysis.
BMC Genom.
Chih-Hung Chou, Hsi-Yuan Huang, Wei-Chih Huang, Sheng-Da Hsu, Chung-Der Hsiao, Chia-Yu Liu, Yu-Hung Chen, Yu-Chen Liu, Wei-Yun Huang, Meng-Lin Lee, Yi-Chang Chen, Hsien-Da Huang
2016 J jnl
CircNet: a database of circular RNAs derived from transcriptome sequencing data.
Nucleic Acids Res.
Yu-Chen Liu, Jianrong Li, Chuan-Hu Sun, Erik Andrews, Rou-Fang Chao, Feng-Mao Lin, Shun-Long Weng, Sheng-Da Hsu, Chieh-Chen Huang, Chao Cheng, Chun-Chi Liu, Hsien-Da Huang
2016 J jnl
Transcriptome sequencing based annotation and homologous evidence based scaffolding of
BMC Genom.
Yu-Chen Liu, Sheng-Da Hsu, Chih-Hung Chou, Wei-Yun Huang, Yu-Hung Chen, Chia-Yu Liu, Guan-Jay Lyu, Shao-Zhen Huang, Sergey Aganezov Jr., Max A. Alekseyev, Chung-Der Hsiao, Hsien-Da Huang
2016 J jnl
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database.
Nucleic Acids Res.
Chih-Hung Chou, Nai-Wen Chang, Sirjana Shrestha, Sheng-Da Hsu, Yu-Ling Lin, Wei-Hsiang Lee, Chi-Dung Yang, Hsiao-Chin Hong, Ting-Yen Wei, Siang-Jyun Tu, Tzi-Ren Tsai, Shu-Yi Ho, Ting-Yan Jian, Hsin-Yi Wu, Pin-Rong Chen, Nai-Chieh Lin, Hsin-Tzu Huang, Tzu-Ling Yang, Chung-Yuan Pai, Chun-San Tai, Wen-Liang Chen, Chia-Yen Huang, Chun-Chi Liu, Shun-Long Weng, Kuang-Wen Liao, Wen-Lian Hsu, Hsien-Da Huang
2015 J jnl
Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.
BMC Genom.
Sheng-Da Hsu, Hsi-Yuan Huang, Chih-Hung Chou, Yi-Ming Sun, Ming-Ta Hsu, Ann-Ping Tsou
2015 J jnl
MethHC: a database of DNA methylation and gene expression in human cancer.
Nucleic Acids Res.
Wei-Yun Huang, Sheng-Da Hsu, Hsi-Yuan Huang, Yi-Ming Sun, Chih-Hung Chou, Shun-Long Weng, Hsien-Da Huang
2014 J jnl
miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions.
Nucleic Acids Res.
Sheng-Da Hsu, Yu-Ting Tseng, Sirjana Shrestha, Yu-Ling Lin, Anas Khaleel, Chih-Hung Chou, Chao-Fang Chu, Hsi-Yuan Huang, Ching-Min Lin, Shu-Yi Ho, Ting-Yan Jian, Feng-Mao Lin, Tzu-Hao Chang, Shun-Long Weng, Kuang-Wen Liao, I-En Liao, Chun-Chi Liu, Hsien-Da Huang
2013 J jnl
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing.
BMC Genom.
Chih-Hung Chou, Feng-Mao Lin, Min-Te Chou, Sheng-Da Hsu, Tzu-Hao Chang, Shun-Long Weng, Sirjana Shrestha, Chiung-Chih Hsiao, Jui-Hung Hung, Hsien-Da Huang
2011 J jnl
miRTar: an integrated system for identifying miRNA-target interactions in Human.
BMC Bioinform.
Justin Bo-Kai Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang
2011 J jnl
miRTarBase: a database curates experimentally validated microRNA-target interactions.
Nucleic Acids Res.
Sheng-Da Hsu, Feng-Mao Lin, Wei-Yun Wu, Chao Liang, Wei-Chih Huang, Wen-Ling Chan, Wen-Ting Tsai, Goun-Zhou Chen, Chia-Jung Lee, Chih-Min Chiu, Chia-Hung Chien, Ming-Chia Wu, Chi-Ying F. Huang, Ann-Ping Tsou, Hsien-Da Huang
2008 J jnl
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes.
Nucleic Acids Res.
Sheng-Da Hsu, Chia-Huei Chu, Ann-Ping Tsou, Shu-Jen Chen, Hua-Chien Chen, Paul Wei-Che Hsu, Yung-Hao Wong, Yi-Hsuan Chen, Gian-Hung Chen, Hsien-Da Huang
2007 J jnl
ViTa: prediction of host microRNAs targets on viruses.
Nucleic Acids Res.
Paul Wei-Che Hsu, Li-Zen Lin, Sheng-Da Hsu, Justin Bo-Kai Hsu, Hsien-Da Huang
2006 J jnl
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.
Nucleic Acids Res.
Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker