Shayn M. Peirce

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2025 J jnl
Generative diffusion model surrogates for mechanistic agent-based biological models.
CoRR
Tien Comlekoglu, Javier Quetzalcóatl Toledo-Marín, Douglas W. DeSimone, Shayn M. Peirce, Geoffrey C. Fox, James A. Glazier
2025 J jnl
Generative diffusion model surrogates for mechanistic agent-based biological models.
Mach. Learn. Sci. Technol.
Tien Comlekoglu, Javier Quetzalcóatl Toledo-Marín, Douglas W. DeSimone, Shayn M. Peirce, Geoffrey C. Fox, James A. Glazier
2025 J jnl
Surrogate modeling of Cellular-Potts Agent-Based Models as a segmentation task using the U-Net neural network architecture.
CoRR
Tien Comlekoglu, Javier Quetzalcóatl Toledo-Marín, Tina Comlekoglu, Douglas W. DeSimone, Shayn M. Peirce, Geoffrey C. Fox, James A. Glazier
2025 J jnl
Surrogate modeling of Cellular-Potts agent-based models as a segmentation task using the U-Net neural network architecture.
PLoS Comput. Biol.
Tien Comlekoglu, Javier Quetzalcóatl Toledo-Marín, Tina Comlekoglu, Douglas W. DeSimone, Shayn M. Peirce, Geoffrey C. Fox, James A. Glazier
2023 J jnl
Correction: A computational modeling approach for predicting multicell spheroid patterns based on signaling-induced differential adhesion.
PLoS Comput. Biol.
Nikita Sivakumar, Helen V. Warner, Shayn M. Peirce, Matthew Lazzara
2023 J jnl
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.
PLoS Comput. Biol.
Christopher J. Skalnik, Sean Y. Cheah, Mica Y. Yang, Mattheus B. Wolff, Ryan K. Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce, Eran Agmon, Markus W. Covert
2022 J jnl
A computational modeling approach for predicting multicell spheroid patterns based on signaling-induced differential adhesion.
PLoS Comput. Biol.
Nikita Sivakumar, Helen V. Warner, Shayn M. Peirce, Matthew Lazzara
2022 J jnl
Combining Machine Learning and Agent-Based Modeling to Study Biomedical Systems.
CoRR
Nikita Sivakumar, Cameron Mura, Shayn M. Peirce
2022 J jnl
Vivarium: an interface and engine for integrative multiscale modeling in computational biology.
Bioinform.
Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert
2021 J jnl
Agent-based model provides insight into the mechanisms behind failed regeneration following volumetric muscle loss injury.
PLoS Comput. Biol.
Amanda M. Westman, Shayn M. Peirce, George J. Christ, Silvia S. Blemker
2019 J jnl
CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures.
Bioinform.
Bruce A. Corliss, H. Clifton Ray, James T. Patrie, Jennifer Mansour, Sam Kesting, Janice H. Park, Gustavo K. Rohde, Paul A. Yates, Kevin A. Janes, Shayn M. Peirce
2019 J jnl
CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures.
Bioinform.
Bruce A. Corliss, H. Clifton Ray, James T. Patrie, Jennifer Mansour, Sam Kesting, Janice H. Park, Gustavo K. Rohde, Paul A. Yates, Kevin A. Janes, Shayn M. Peirce
2009 J jnl
Agent-Based Model of Therapeutic Adipose-Derived Stromal Cell Trafficking during Ischemia Predicts Ability To Roll on P-Selectin.
PLoS Comput. Biol.
Alexander M. Bailey, Michael B. Lawrence, Hulan Shang, Adam J. Katz, Shayn M. Peirce
2007 J jnl
Combining experiments with multi-cell agent-based modeling to study biological tissue patterning.
Briefings Bioinform.
Bryan C. Thorne, Alexander M. Bailey, Shayn M. Peirce
2007 J jnl
Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior.
BMC Syst. Biol.
Scott H. Robertson, Chris K. Smith, Anna L. Langhans, Sara E. McLinden, Matthew A. Oberhardt, Karoly R. Jakab, Bette Dzamba, Douglas W. DeSimone, Jason A. Papin, Shayn M. Peirce
2006 J jnl
Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations.
IBM J. Res. Dev.
Shayn M. Peirce, Thomas C. Skalak, Jason A. Papin