Shawn M. Gomez

17 papers A* 1A 1Misc 1Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2024 A* conf
SALSA: Semantically-Aware Latent Space Autoencoder.
AAAI
Kathryn E. Kirchoff, Travis Maxfield, Alexander Tropsha, Shawn M. Gomez
2024 — conf
Utilizing Low-Dimensional Molecular Embeddings for Rapid Chemical Similarity Search.
ECIR (2)
Kathryn E. Kirchoff, James Wellnitz, Joshua E. Hochuli, Travis Maxfield, Konstantin I. Popov, Shawn M. Gomez, Alexander Tropsha
2024 J jnl
Utilizing Low-Dimensional Molecular Embeddings for Rapid Chemical Similarity Search.
CoRR
Kathryn E. Kirchoff, James Wellnitz, Joshua E. Hochuli, Travis Maxfield, Konstantin I. Popov, Shawn M. Gomez, Alexander Tropsha
2023 J jnl
Kinome inhibition states and multiomics data enable prediction of cell viability in diverse cancer types.
PLoS Comput. Biol.
Matthew E. Berginski, Chinmaya U. Joisa, Brian T. Golitz, Shawn M. Gomez
2023 J jnl
SALSA: Semantically-Aware Latent Space Autoencoder.
CoRR
Kathryn E. Kirchoff, Travis Maxfield, Alexander Tropsha, Shawn M. Gomez
2022 J jnl
EMBER: multi-label prediction of kinase-substrate phosphorylation events through deep learning.
Bioinform.
Kathryn E. Kirchoff, Shawn M. Gomez
2021 J jnl
The Dark Kinase Knowledgebase: an online compendium of knowledge and experimental results of understudied kinases.
Nucleic Acids Res.
Matthew E. Berginski, Nienke Moret, Changchang Liu, Dennis Goldfarb, Peter K. Sorger, Shawn M. Gomez
2013 J jnl
The Focal Adhesion Analysis Server: a web tool for analyzing focal adhesion dynamics.
F1000Research
Matthew E. Berginski, Shawn M. Gomez
2011 J jnl
A Whole-Body Model for Glycogen Regulation Reveals a Critical Role for Substrate Cycling in Maintaining Blood Glucose Homeostasis.
PLoS Comput. Biol.
Ke Xu, Kevin T. Morgan, Abby Todd Gehris, Timothy C. Elston, Shawn M. Gomez
2010 J jnl
Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS).
BMC Bioinform.
Jennifer M. Staab, Thomas M. O'Connell, Shawn M. Gomez
2009 J jnl
Comparison of phylogenetic trees through alignment of embedded evolutionary distances.
BMC Bioinform.
Kwangbom Choi, Shawn M. Gomez
2003 J jnl
Learning to predict protein-protein interactions from protein sequences.
Bioinform.
Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky
2002 A conf
Of truth and pathways: chasing bits of information through myriads of articles.
ISMB
Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky
2002 Misc conf
Towards the Prediction of Complete Protein-Protein Interaction Networks.
Pacific Symposium on Biocomputing
Shawn M. Gomez, Andrey Rzhetsky
2001 J jnl
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.
Bioinform.
Andrey Rzhetsky, Shawn M. Gomez
2001 — conf
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways.
German Conference on Bioinformatics
Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman
2000 J jnl
A knowledge model for analysis and simulation of regulatory networks.
Bioinform.
Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman