Sharmila S. Mande

20 papers Journal 19Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text.
Comput. Biol. Chem.
Krishanu Das Baksi, Vatsala Pokhrel, Anand Eruvessi Pudavar, Sharmila S. Mande, Bhusan K. Kuntal
2023 J jnl
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text.
CoRR
Krishanu Das Baksi, Vatsala Pokhrel, Bhusan K. Kuntal, Sharmila S. Mande
2021 J jnl
NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through Venn-integrated network diagrams.
Bioinform.
Sunil Nagpal, Bhusan K. Kuntal, Sharmila S. Mande
2021 — conf
Utilizing domain-based features to improve classification accuracy of biomedical text having bacterial associations.
BIBM
Vatsala Pokhrel, Bhusan K. Kuntal, Divyanshu Srivastava, Sharmila S. Mande, Krishanu Das Baksi
2020 J jnl
FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information.
Bioinform.
Swadha Anand, Bhusan K. Kuntal, Anwesha Mohapatra, Vineet Bhatt, Sharmila S. Mande
2020 J jnl
MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks.
Nucleic Acids Res.
Sunil Nagpal, Rashmi Singh, Deepak Yadav, Sharmila S. Mande
2019 J jnl
Correction to: CompNet: a GUI based tool for comparison of multiple biological interaction networks.
BMC Bioinform.
Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande
2017 J jnl
Web-igloo: a web based platform for multivariate data visualization.
Bioinform.
Bhusan K. Kuntal, Sharmila S. Mande
2016 J jnl
CompNet: a GUI based tool for comparison of multiple biological interaction networks.
BMC Bioinform.
Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande
2015 J jnl
FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets.
J. Bioinform. Comput. Biol.
Anirban Dutta, Mohammed Monzoorul Haque, Tungadri Bose, Ch. V. Siva K. Reddy, Sharmila S. Mande
2015 J jnl
Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly.
J. Bioinform. Comput. Biol.
Tarini Shankar Ghosh, Varun Mehra, Sharmila S. Mande
2012 J jnl
Classification of metagenomic sequences: methods and challenges.
Briefings Bioinform.
Sharmila S. Mande, Monzoorul Haque Mohammed, Tarini Shankar Ghosh
2012 J jnl
DELIMINATE - a fast and efficient method for loss-less compression of genomic sequences: Sequence analysis.
Bioinform.
Monzoorul Haque Mohammed, Anirban Dutta, Tungadri Bose, Sudha Chadaram, Sharmila S. Mande
2011 J jnl
HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences.
BMC Bioinform.
Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Hannah Rajasingh, Sudha Chadaram, Sharmila S. Mande
2011 J jnl
SPHINX - an algorithm for taxonomic binning of metagenomic sequences.
Bioinform.
Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Nitin Kumar Singh, Sharmila S. Mande
2010 J jnl
DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences.
BMC Bioinform.
Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Sharmila S. Mande
2009 J jnl
Mathematical Modeling of Regulation of Type III Secretion System in Salmonella enterica Serovar Typhimurium by SirA.
Silico Biol.
Aparna B. Ganesh, Hannah Rajasingh, Sharmila S. Mande
2009 J jnl
SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences.
Bioinform.
Mohammed Monzoorul Haque, Tarini Shankar Ghosh, Dinakar Komanduri, Sharmila S. Mande
2008 J jnl
The 4M (Mixed Memory Markov Model) Algorithm for Finding Genes in Prokaryotic Genomes.
IEEE Trans. Autom. Control.
Mathukumalli Vidyasagar, Sharmila S. Mande, Ch. V. Siva K. Reddy, V. V. Raja Rao
2007 J jnl
Identification of compositionally distinct regions in genomes using the centroid method.
Bioinform.
Issaac Rajan, Sarang Aravamuthan, Sharmila S. Mande