Shao-Wu Zhang - RankMe

45 papers Journal 32Unranked 13

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Few-shot drug synergy prediction via rapid cross-tier adaptation meta-optimization. Briefings Bioinform. Yue-Hua Feng, Ze-Lin Feng, Xiao-Ying Yan, Shao-Wu Zhang, Jian-Yu Shi
2024	J	`jnl`	Identifying cooperating cancer driver genes in individual patients through hypergraph random walk. J. Biomed. Informatics Tong Zhang, Shao-Wu Zhang, Ming-Yu Xie, Yan Li
2023	J	`jnl`	A novel heterophilic graph diffusion convolutional network for identifying cancer driver genes. Briefings Bioinform. Tong Zhang, Shao-Wu Zhang, Ming-Yu Xie, Yan Li
2023	J	`jnl`	A social theory-enhanced graph representation learning framework for multitask prediction of drug-drug interactions. Briefings Bioinform. Yue-Hua Feng, Shao-Wu Zhang, Yi-Yang Feng, Qing-Qing Zhang, Ming-Hui Shi, Jian-Yu Shi
2023	J	`jnl`	Diagnosis of Alzheimer's disease by joining dual attention CNN and MLP based on structural MRIs, clinical and genetic data. Artif. Intell. Medicine Yan-Rui Qiang, Shao-Wu Zhang, Jia-Ni Li, Yan Li, Qin-Yi Zhou
2023	J	`jnl`	PhenoDriver: interpretable framework for studying personalized phenotype-associated driver genes in breast cancer. Briefings Bioinform. Yan Li, Shao-Wu Zhang, Ming-Yu Xie, Tong Zhang
2022	J	`jnl`	DGMP: Identifying Cancer Driver Genes by Jointing DGCN and MLP from Multi-omics Genomic Data. Genom. Proteom. Bioinform. Shao-Wu Zhang, Jing-Yu Xu, Tong Zhang
2022	J	`jnl`	Prioritization of cancer driver gene with prize-collecting steiner tree by introducing an edge weighted strategy in the personalized gene interaction network. BMC Bioinform. Shao-Wu Zhang, Zhen-Nan Wang, Yan Li, Weifeng Guo
2021	J	`jnl`	An Integrative Framework for Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning. IEEE ACM Trans. Comput. Biol. Bioinform. Fang Jing, Shao-Wu Zhang, Zhen Cao, Shihua Zhang
2021	J	`jnl`	Identifying driver genes for individual patients through inductive matrix completion. Bioinform. Tong Zhang, Shao-Wu Zhang, Yan Li
2021	J	`jnl`	Performance assessment of sample-specific network control methods for bulk and single-cell biological data analysis. PLoS Comput. Biol. Weifeng Guo, Xiangtian Yu, Qianqian Shi, Jing Liang, Shao-Wu Zhang, Tao Zeng
2021	J	`jnl`	Resilience function uncovers the critical transitions in cancer initiation. Briefings Bioinform. Yan Li, Shao-Wu Zhang
2020	J	`jnl`	Identification of Alzheimer's disease based on wavelet transformation energy feature of the structural MRI image and NN classifier. Artif. Intell. Medicine Jinwang Feng, Shao-Wu Zhang, Luonan Chen, Alzheimer's Disease Neuroimaging Initiative
2020	J	`jnl`	Prediction of enhancer-promoter interactions using the cross-cell type information and domain adversarial neural network. BMC Bioinform. Fang Jing, Shao-Wu Zhang, Shihua Zhang
2020	J	`jnl`	smsMap: mapping single molecule sequencing reads by locating the alignment starting positions. BMC Bioinform. Ze-Gang Wei, Shao-Wu Zhang, Fei Liu
2019	J	`jnl`	A novel network control model for identifying personalized driver genes in cancer. PLoS Comput. Biol. Weifeng Guo, Shao-Wu Zhang, Tao Zeng, Yan Li, Jianxi Gao, Luonan Chen
2019	J	`jnl`	FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes. Bioinform. Song-Yao Zhang, Shao-Wu Zhang, Xiao-Nan Fan, Teng Zhang, Jia Meng, Yufei Huang
2019	J	`jnl`	LPI-BLS: Predicting lncRNA-protein interactions with a broad learning system-based stacked ensemble classifier. Neurocomputing Xiao-Nan Fan, Shao-Wu Zhang
2019	J	`jnl`	Prediction of drug-target interaction by integrating diverse heterogeneous information source with multiple kernel learning and clustering methods. Comput. Biol. Chem. Xiao-Ying Yan, Shao-Wu Zhang, Chang-Run He
2019	J	`jnl`	Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information. BMC Bioinform. Xiao-Nan Fan, Shao-Wu Zhang, Song-Yao Zhang, Kunju Zhu, Songjian Lu
2018	—	`conf`	Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning. ISBRA Fang Jing, Shao-Wu Zhang, Zhen Cao, Shihua Zhang
2018	J	`jnl`	Discovering personalized driver mutation profiles of single samples in cancer by network control strategy. Bioinform. Weifeng Guo, Shao-Wu Zhang, Li-Li Liu, Fei Liu, Qianqian Shi, Lei Zhang, Ying Tang, Tao Zeng, Luonan Chen
2018	J	`jnl`	MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome. Nucleic Acids Res. Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang
2018	J	`jnl`	NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model. BMC Bioinform. Ze-Gang Wei, Shao-Wu Zhang
2018	J	`jnl`	trumpet: transcriptome-guided quality assessment of m6A-seq data. BMC Bioinform. Teng Zhang, Shao-Wu Zhang, Lin Zhang, Jia Meng
2017	J	`jnl`	QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model. BMC Bioinform. Lian Liu, Shao-Wu Zhang, Yufei Huang, Jia Meng
2016	J	`jnl`	Exploring the interaction patterns among taxa and environments from marine metagenomic data. Quant. Biol. Ze-Gang Wei, Shao-Wu Zhang, Fang Jing
2016	J	`jnl`	Inference of Gene Regulatory Network Based on Local Bayesian Networks. PLoS Comput. Biol. Fei Liu, Shao-Wu Zhang, Weifeng Guo, Ze-Gang Wei, Luonan Chen
2016	J	`jnl`	m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks. PLoS Comput. Biol. Song-Yao Zhang, Shao-Wu Zhang, Lian Liu, Jia Meng, Yufei Huang
2014	—	`conf`	Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test. GlobalSIP Lin Zhang, Jia Meng, Hui Liu, Xiaodong Cui, Shao-Wu Zhang, Yidong Chen, Yufei Huang
2014	—	`conf`	Differential analysis of RNA methylome with improved spatial resolution. GlobalSIP Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Lin Zhang, Hui Liu, Xiaodong Cui, Yufei Huang, Jia Meng
2014	J	`jnl`	Supervised method for periodontitis phenotypes prediction based on microbial composition using 16S rRNA sequences. Int. J. Comput. Biol. Drug Des. Wei Chen, Yongmei Cheng, Shao-Wu Zhang, Quan Pan
2013	—	`conf`	Detecting seasonal marine microbial communities with symmetrical non-negative matrix factorization. BIBM Shao-Wu Zhang, Fei Liu, Ze-Gang Wei, Wei Chen, Chen Zhou
2012	—	`conf`	A seed-based approach to identify risk disease sub-networks in human lung cancer. ISB Yi-Bin Wang, Yongmei Cheng, Shao-Wu Zhang, Wei Chen
2011	—	`conf`	Prediction of Protein-Protein Interaction Using Distance Frequency of Amino Acids Grouped with their Physicochemical Properties. BIC-TA Shao-Wu Zhang, Yongmei Cheng, Li Luo, Quan Pan
2010	—	`conf`	Finding Fuzzy Communities in Directed Networks. ANNIIP Kun Zhao, Shao-Wu Zhang, Quan Pan
2010	J	`jnl`	PPLook: an automated data mining tool for protein-protein interaction. BMC Bioinform. Shao-Wu Zhang, Yao-Jun Li, Li C. Xia, Quan Pan
2010	—	`conf`	Prediction of Protein-RNA interaction site using SVM-KNN algorithm with spatial information. BIBM Wei Chen, Shao-Wu Zhang, Yongmei Cheng, Quan Pan
2010	J	`jnl`	Prediction of protein-protein interaction types using the decision templates based on multiple classier fusion. Math. Comput. Model. Wei Chen, Shao-Wu Zhang, Yongmei Cheng, Quan Pan
2008	—	`conf`	Predicting Protein Quaternary Structure with Multi-scale Energy of Amino Acid Factor Solution Scores and Their Combination. ICMB Shao-Wu Zhang, Wei Chen, Chunhui Zhao, Yongmei Cheng, Quan Pan
2008	—	`conf`	Prediction of Protein Homo-oligomer Types with a Novel Approach of Glide Zoom Window Feature Extraction. ICIC (1) Qi-Peng Li, Shao-Wu Zhang, Quan Pan
2008	—	`conf`	Using Multi-scale Glide Zoom Window Feature Extraction Approach to Predict Protein Homo-oligomer Types. PRIB Qi-Peng Li, Shao-Wu Zhang, Quan Pan
2007	—	`conf`	Using Decision Templates to Predict Subcellular Localization of Protein. PRIB Jianyu Shi, Shao-Wu Zhang, Quan Pan, Yanning Zhang
2006	—	`conf`	Prediction of Protein Subcellular Localizations Using Moment Descriptors and Support Vector Machine. PRIB Jianyu Shi, Shao-Wu Zhang, Yan Liang, Quan Pan
2003	J	`jnl`	Classification of protein quaternary structure with support vector machine. Bioinform. Shao-Wu Zhang, Quan Pan, Hongcai Zhang, Yun-Long Zhang, Hai-Yu Wang