Shantanu Singh

41 papers A* 4A 1Journal 21Unranked 15

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Cubic: CUDA-Accelerated 3D Bioimage Computing. ICCVW Alexandr A. Kalinin, Anne E. Carpenter, Shantanu Singh, Matthew J. O'Meara
2025	J	`jnl`	Foreground-aware Virtual Staining for Accurate 3D Cell Morphological Profiling. CoRR Alexandr A. Kalinin, Paula Llanos, Theresa Maria Sommer, Giovanni Sestini, Xinhai Hou, Jonathan Z. Sexton, Xiang Wan, Ivo D. Dinov, Brian D. Athey, Nicolas Rivron, Anne E. Carpenter, Beth A. Cimini, Shantanu Singh, Matthew J. O'Meara
2025	A*	`conf`	Learning Molecular Representation in a Cell. ICLR Gang Liu, Srijit Seal, John Arevalo, Zhenwen Liang, Anne E. Carpenter, Meng Jiang, Shantanu Singh
2025	J	`jnl`	Projected incrementally scattering passive systems on closed convex sets. Syst. Control. Lett. Shantanu Singh, Sébastien Fueyo, George Weiss
2025	J	`jnl`	The local representation of incrementally scattering passive nonlinear systems. Math. Control. Signals Syst. Shantanu Singh, George Weiss
2025	J	`jnl`	cp_measure: API-first feature extraction for image-based profiling workflows. CoRR Alán F. Muñoz, Tim Treis, Alexandr A. Kalinin, Shatavisha Dasgupta, Fabian J. Theis, Anne E. Carpenter, Shantanu Singh
2025	J	`jnl`	cubic: CUDA-accelerated 3D Bioimage Computing. CoRR Alexandr A. Kalinin, Anne E. Carpenter, Shantanu Singh, Matthew J. O'Meara
2024	J	`jnl`	Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning. PLoS Comput. Biol. Robert van Dijk, John Arevalo, Mehrtash Babadi, Anne E. Carpenter, Shantanu Singh
2024	J	`jnl`	Insights into Drug Cardiotoxicity from Biological and Chemical Data: The First Public Classifiers for FDA Drug-Induced Cardiotoxicity Rank. J. Chem. Inf. Model. Srijit Seal, Ola Spjuth, Layla Hosseini-Gerami, Miguel García-Ortegón, Shantanu Singh, Andreas Bender, Anne E. Carpenter
2024	J	`jnl`	Learning Molecular Representation in a Cell. CoRR Gang Liu, Srijit Seal, John Arevalo, Zhenwen Liang, Anne E. Carpenter, Meng Jiang, Shantanu Singh
2024	J	`jnl`	MOTI CoRR John Arevalo, Ellen Su, Anne E. Carpenter, Shantanu Singh
2024	A*	`conf`	MOTIVE: A Drug-Target Interaction Graph For Inductive Link Prediction. NeurIPS John Arevalo, Ellen Su, Anne E. Carpenter, Shantanu Singh
2024	J	`jnl`	Numerical and Lyapunov-Based Investigation of the Effect of Stenosis on Blood Transport Stability Using a Control-Theoretic PDE Model of Cardiovascular Flow. CoRR Shantanu Singh, Nikolaos Bekiaris-Liberis
2024	J	`jnl`	Numerical and Lyapunov-Based Investigation of the Effect of Stenosis on Blood Transport Stability Using a Control-Theoretic PDE Model of Cardiovascular Flow. IEEE Control. Syst. Lett. Shantanu Singh, Nikolaos Bekiaris-Liberis
2024	J	`jnl`	Understanding Biology in the Age of Artificial Intelligence. CoRR Elsa Lawrence, Adham El-Shazly, Srijit Seal, Chaitanya K. Joshi, Pietro Liò, Shantanu Singh, Andreas Bender, Pietro Sormanni, Matthew Greenig
2023	—	`conf`	Incrementally passive infinite dimensional systems with a constrained state variable. CDC Shantanu Singh, Sébastien Fueyo, George Weiss
2023	—	`conf`	MultiFacet: A Multi-Tasking Framework for Speech-to-Sign Language Generation. ICMI Companion Mounika Kanakanti, Shantanu Singh, Manish Shrivastava
2023	A*	`conf`	Pseudo-Labeling Enhanced by Privileged Information and Its Application to In Situ Sequencing Images. IJCAI Marzieh Haghighi, Mario C. Cruz, Erin Weisbart, Beth A. Cimini, Avtar Singh, Julia Bauman, Maria E. Lozada, Sanam L. Kavari, James T. Neal, Paul C. Blainey, Anne E. Carpenter, Shantanu Singh
2023	J	`jnl`	Pseudo-Labeling Enhanced by Privileged Information and Its Application to In Situ Sequencing Images. CoRR Marzieh Haghighi, Mario C. Cruz, Erin Weisbart, Beth A. Cimini, Avtar Singh, Julia Bauman, Maria E. Lozada, Sanam L. Kavari, James T. Neal, Paul C. Blainey, Anne E. Carpenter, Shantanu Singh
2023	J	`jnl`	Second Order Systems on Hilbert Spaces with Nonlinear Damping. SIAM J. Control. Optim. Shantanu Singh, George Weiss
2022	J	`jnl`	A class of incrementally scattering-passive nonlinear systems. Autom. Shantanu Singh, George Weiss, Marius Tucsnak
2022	A	`conf`	IndoLayout: Leveraging Attention for Extended Indoor Layout Estimation from an RGB Image. IROS Shantanu Singh, Jaidev Shriram, Shaantanu Kulkarni, Brojeshwar Bhowmick, K. Madhava Krishna
2022	—	`conf`	Nonlinear perturbation of a class of conservative linear system. CDC Shantanu Singh, George Weiss
2022	J	`jnl`	Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic. PLoS Comput. Biol. Yuen Ler Chow, Shantanu Singh, Anne E. Carpenter, Gregory P. Way
2021	—	`conf`	Abstract nonlinear control systems. CDC Shantanu Singh, George Weiss, Marius Tucsnak
2019	—	`conf`	Capturing Single-Cell Phenotypic Variation via Unsupervised Representation Learning. MIDL Maxime W. Lafarge, Juan C. Caicedo, Anne E. Carpenter, Josien P. W. Pluim, Shantanu Singh, Mitko Veta
2019	J	`jnl`	Capturing variations in nuclear phenotypes. J. Comput. Sci. Sundaresan Raman, Shantanu Singh, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju
2019	J	`jnl`	Smart Laptop Bag with Machine Learning for Activity Recognition. CoRR Dwij Sukeshkumar Sheth, Shantanu Singh, Prakhar S. Mathur, Vydeki D
2018	—	`conf`	Combining morphological and migration profiles of in vitro time-lapse data. ISBI Tim Becker, Juan C. Caicedo, Shantanu Singh, Markus Weckmann, Anne E. Carpenter
2018	A*	`conf`	Weakly Supervised Learning of Single-Cell Feature Embeddings. CVPR Juan C. Caicedo, Claire McQuin, Allen Goodman, Shantanu Singh, Anne E. Carpenter
2016	J	`jnl`	CP-CHARM: segmentation-free image classification made accessible. BMC Bioinform. Virginie Uhlmann, Shantanu Singh, Anne E. Carpenter
2016	J	`jnl`	CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets. Bioinform. David Dao, Adam Fraser, Jane Hung, Vebjorn Ljosa, Shantanu Singh, Anne E. Carpenter
2013	—	`conf`	Who is repinning?: predicting a brand's user interactions using social media retrieval. MDM/KDD Shantanu Singh, Yan Wang, Lei Ding
2012	—	`conf`	Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images. ISBI Thierry Pécot, Shantanu Singh, Enrico Caserta, Kun Huang, Raghu Machiraju, Gustavo Leone
2011	—	`conf`	Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning. IPMI Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Gustavo Leone, Jens Rittscher, Raghu Machiraju
2011	—	`conf`	Non-parametric Population Analysis of Cellular Phenotypes. MICCAI (2) Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju
2011	J	`jnl`	Spatio-temporal models of mental processes from fMRI. NeuroImage Firdaus Janoos, Raghu Machiraju, Shantanu Singh, István Ákos Mórocz
2011	—	`conf`	State-Space Models of Mental Processes from fMRI. IPMI Firdaus Janoos, Shantanu Singh, Raghu Machiraju, William M. Wells III, István Ákos Mórocz
2010	—	`conf`	Analysis of spatial variation of nuclear morphology in tissue microenvironments. ISBI Shantanu Singh, Sundaresan Raman, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Jens Rittscher, Raghu Machiraju
2008	—	`conf`	Microstructure preserving synthesis of biomedical images. ISBI Shantanu Singh, Kishore Mosaliganti, Raghu Machiraju
2007	—	`conf`	Activity Analysis Using Spatio-Temporal Trajectory Volumes in Surveillance Applications. IEEE VAST Firdaus Janoos, Shantanu Singh, M. Okan Irfanoglu, Raghu Machiraju, Richard E. Parent