Shannon K. McWeeney

19 papers Misc 3Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Recent Advances, Applications and Open Challenges in Machine Learning for Health: Reflections from Research Roundtables at ML4H 2024 Symposium.
CoRR
Amin Adibi, Xu Cao, Zongliang Ji, Jivat Neet Kaur, Winston Chen, Elizabeth Healey, Brighton Nuwagira, Wenqian Ye, Geoffrey Woollard, Maxwell A. Xu, Hejie Cui, Johnny Xi, Trenton Chang, Vasiliki Bikia, Nicole Zhang, Ayush Noori, Yuan Xia, Md. Belal Hossain, Hanna A. Frank, Alina Peluso, Yuan Pu, Shannon Zejiang Shen, John Wu, Adibvafa Fallahpour, Sazan Mahbub, Ross Duncan, Yuwei Zhang, Yurui Cao, Zuheng Xu, Michael Craig, Rahul G. Krishnan, Rahmatollah Beheshti, James M. Rehg, Mohammad Ehsanul Karim, Megan Coffee, Leo Anthony Celi, Jason Alan Fries, Mohsen Sadatsafavi, Dennis L. Shung, Shannon K. McWeeney, Jessica Dafflon, Sarah Jabbour
2024 J jnl
Data Valuation with Gradient Similarity.
CoRR
Nathaniel J. Evans, Gordon B. Mills, Guanming Wu, Xubo Song, Shannon K. McWeeney
2023 J jnl
Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease.
Patterns
Joshua G. Burkhart, Guanming Wu, Xubo Song, Francesco Raimondi, Shannon K. McWeeney, Melissa H. Wong, Youping Deng
2021 J jnl
Biology and medicine in the landscape of quantum advantages.
CoRR
Benjamin A. Cordier, Nicolas P. D. Sawaya, Gian Giacomo Guerreschi, Shannon K. McWeeney
2018 Misc conf
Data Science in Biomedical Informatics Education: Critical Problems and Innovative Solutions.
AMIA
Harry Hochheiser, Javed Mostafa, Nils Gehlenborg, Shannon K. McWeeney, Valerie Florance
2016 J jnl
HitWalker2: visual analytics for precision medicine and beyond.
Bioinform.
Daniel Bottomly, Shannon K. McWeeney, Beth Wilmot
2016 J jnl
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus.
BMC Syst. Biol.
Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters
2015 — conf
Data Like This: Ranked Search of Genomic Data Vision Paper.
ExploreDB@SIGMOD/PODS
V. M. Megler, David Maier, Daniel Bottomly, Libbey White, Shannon K. McWeeney, Beth Wilmot
2015 J jnl
plethy: management of whole body plethysmography data in R.
BMC Bioinform.
Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney
2014 Misc conf
Challenges in Secondary Analysis of High Throughput Screening Data.
Pacific Symposium on Biocomputing
Aurora S. Blucher, Shannon K. McWeeney
2014 J jnl
oligoMask: A Framework for Assessing and Removing the Effect of Genetic Variants on Microarray Probes.
R J.
Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney
2013 J jnl
A simulation framework to investigate in vitro viral infection dynamics.
J. Comput. Sci.
Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon K. McWeeney, Peter M. A. Sloot
2013 J jnl
HitWalker: variant prioritization for personalized functional cancer genomics.
Bioinform.
Daniel Bottomly, Beth Wilmot, Jeffrey W. Tyner, Christopher A. Eide, Marc M. Loriaux, Brian J. Druker, Shannon K. McWeeney
2013 J jnl
Protein co-expression network analysis (ProCoNA).
J. Clin. Bioinform.
David L. Gibbs, Arie Baratt, Ralph S. Baric, Yoshihiro Kawaoka, Richard D. Smith, Eric S. Orwoll, Michael G. Katze, Shannon K. McWeeney
2012 J jnl
The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations.
IEEE ACM Trans. Comput. Biol. Bioinform.
Michael Mooney, Beth Wilmot, Shannon K. McWeeney
2012 J jnl
Utilizing RNA-Seq data for
Bioinform.
Ovidiu D. Iancu, Sunita Kawane, Daniel Bottomly, Robert P. Searles, Robert Hitzemann, Shannon K. McWeeney
2011 Misc conf
A Simulation Framework to Investigate in vitro Viral Infection Dynamics.
ICCS
Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon K. McWeeney, Peter M. A. Sloot
2011 J jnl
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems.
BMC Syst. Biol.
Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters
2002 J jnl
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic Acids Res.
Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.