Shangwei Ning

31 papers Journal 31
YearRankTypeTitle / Venue / Authors
2025 J jnl
Comprehensive characterization of respiratory genes based on a computational framework in pan-cancer to develop stratified treatment strategies.
PLoS Comput. Biol.
Caiyu Zhang, Chenyu Liu, Zhuoru Wang, Di Wang, Wenli Chen, Jian Li, Qianyi Lu, Jiajun Zhou, Yetong Chang, Peng Wang, Yue Gao, Junwei Wang, Hui Zhi, Shangwei Ning
2025 J jnl
Dynamic changes of synergy relationship between lncRNA and immune checkpoint in cancer progression.
Briefings Bioinform.
Chenyu Liu, Qianyi Lu, Jian Li, Di Wang, Zhuoru Wang, Wenli Chen, Yakun Zhang, Caiyu Zhang, Yue Gao, Shangwei Ning
2025 J jnl
ISENICS: a model for identifying senescent immune cells and samples and characterization of their roles in tumor microenvironment.
Briefings Bioinform.
Miaomiao Tian, Hao Cui, Xinyu Wang, Huading Hu, Longlong Dong, Song Xiao, Changfan Qu, Peng Wang, Hui Zhi, Shangwei Ning, Yue Gao
2025 J jnl
MRdb: a comprehensive database of univariate and multivariate Mendelian randomization with large-scale GWAS summary data.
Database J. Biol. Databases Curation
Qian Liu, Yujie Zhang, Houxing Li, Jiatong Li, Mengyu Xin, Rui Sun, Yifan Dai, Xinxin Shan, Yuting He, Borui Xu, Shangwei Ning, Peng Wang, Qiuyan Guo
2024 J jnl
AVM: A Manually Curated Database of Aerosol-transmitted Virus Mutations, Human Diseases, and Drugs.
Genom. Proteom. Bioinform.
Lan Mei, Yaopan Hou, Jiajun Zhou, Yetong Chang, Yuwei Liu, Di Wang, Yunpeng Zhang, Shangwei Ning, Xia Li
2024 J jnl
Comprehensive quantitative radiogenomic evaluation reveals novel radiomic subtypes with distinct immune pattern in glioma.
Comput. Biol. Medicine
Yue Sun, Yakun Zhang, Jing Gan, Hanxiao Zhou, Shuang Guo, Xinyue Wang, Caiyu Zhang, Wen Zheng, Xiaoxi Zhao, Xia Li, Li Wang, Shangwei Ning
2024 J jnl
MSGD: a manually curated database of genomic, transcriptomic, proteomic and drug information for multiple sclerosis.
Database J. Biol. Databases Curation
Tao Wu, Yaopan Hou, Guanghao Xin, Jingyan Niu, Shanshan Peng, Fanfan Xu, Ying Li, Yuling Chen, Yifangfei Yu, Huixue Zhang, Xiaotong Kong, Yuze Cao, Shangwei Ning, Lihua Wang, Junwei Hao
2024 J jnl
Metabolic-Related Gene Prognostic Index for Predicting Prognosis, Immunotherapy Response, and Candidate Drugs in Ovarian Cancer.
J. Chem. Inf. Model.
Shuang Guo, Yuwei Liu, Yue Sun, Hanxiao Zhou, Yue Gao, Peng Wang, Hui Zhi, Yakun Zhang, Jing Gan, Shangwei Ning
2023 J jnl
CellTracer: a comprehensive database to dissect the causative multilevel interplay contributing to cell development trajectories.
Nucleic Acids Res.
Qiuyan Guo, Peng Wang, Qian Liu, Yangyang Hao, Yue Gao, Yue Qi, Rongji Xu, Hongyan Chen, Mengyu Xin, Xiaoting Wu, Rui Sun, Hui Zhi, Yunpeng Zhang, Shangwei Ning, Xia Li
2023 J jnl
LncPCD: a manually curated database of experimentally supported associations between lncRNA-mediated programmed cell death and diseases.
Database J. Biol. Databases Curation
Ni He, Danyang Li, Fanfan Xu, Jingnan Jin, Lifang Li, Liting Tian, Biying Chen, Xiaoju Li, Shangwei Ning, Lihua Wang, Jianjian Wang
2023 J jnl
LncTarD 2.0: an updated comprehensive database for experimentally-supported functional lncRNA-target regulations in human diseases.
Nucleic Acids Res.
Hongying Zhao, Xiangzhe Yin, Haotian Xu, Kailai Liu, Wangyang Liu, Lixia Wang, Caiyu Zhang, Lin Bo, Xicheng Lan, Shihua Lin, Ke Feng, Shangwei Ning, Yunpeng Zhang, Li Wang
2023 J jnl
RNA2Immune: A Database of Experimentally Supported Data Linking Non-coding RNA Regulation to The Immune System.
Genom. Proteom. Bioinform.
Jianjian Wang, Shuang Li, Tianfeng Wang, Si Xu, Xu Wang, Xiaotong Kong, Xiaoyu Lu, Huixue Zhang, Lifang Li, Meng Feng, Shangwei Ning, Lihua Wang
2023 J jnl
Tumor biology, immune infiltration and liver function define seven hepatocellular carcinoma subtypes linked to distinct drivers, survival and drug response.
Comput. Biol. Medicine
Ruihong Wu, Yue Gao, Xiaoxi Zhao, Shuang Guo, Hanxiao Zhou, Yakun Zhang, Yaopan Hou, Lan Mei, Hui Zhi, Peng Wang, Xia Li, Shangwei Ning, Yunpeng Zhang
2022 J jnl
AgingBank: a manually curated knowledgebase and high-throughput analysis platform that provides experimentally supported multi-omics data relevant to aging in multiple species.
Briefings Bioinform.
Yue Gao, Shipeng Shang, Shuang Guo, Xinyue Wang, Hanxiao Zhou, Yue Sun, Jing Gan, Yakun Zhang, Xia Li, Shangwei Ning, Yunpeng Zhang
2022 J jnl
Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer.
Briefings Bioinform.
Xin Li, Xu Pan, Hanxiao Zhou, Peng Wang, Yue Gao, Shipeng Shang, Shuang Guo, Jie Sun, Zhiying Xiong, Shangwei Ning, Hui Zhi, Xia Li
2022 J jnl
Epigenome signature as an immunophenotype indicator prompts durable clinical immunotherapy benefits in lung adenocarcinoma.
Briefings Bioinform.
Xu Pan, Caiyu Zhang, Junwei Wang, Peng Wang, Yue Gao, Shipeng Shang, Shuang Guo, Xin Li, Hui Zhi, Shangwei Ning
2022 J jnl
LncACTdb 3.0: an updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine.
Nucleic Acids Res.
Peng Wang, Qiuyan Guo, Yue Qi, Yangyang Hao, Yue Gao, Hui Zhi, Yuanfu Zhang, Yue Sun, Yakun Zhang, Mengyu Xin, Yunpeng Zhang, Shangwei Ning, Xia Li
2021 J jnl
LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements.
Nucleic Acids Res.
Yue Gao, Xin Li, Shipeng Shang, Shuang Guo, Peng Wang, Dailin Sun, Jing Gan, Jie Sun, Yakun Zhang, Junwei Wang, Xinyue Wang, Xia Li, Yunpeng Zhang, Shangwei Ning
2021 J jnl
LnCeCell: a comprehensive database of predicted lncRNA-associated ceRNA networks at single-cell resolution.
Nucleic Acids Res.
Peng Wang, Qiuyan Guo, Yangyang Hao, Qian Liu, Yue Gao, Hui Zhi, Xin Li, Shipeng Shang, Shuang Guo, Yunpeng Zhang, Shangwei Ning, Xia Li
2021 J jnl
Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data.
Nucleic Acids Res.
Yue Gao, Shipeng Shang, Shuang Guo, Xin Li, Hanxiao Zhou, Hongjia Liu, Yue Sun, Junwei Wang, Peng Wang, Hui Zhi, Xia Li, Shangwei Ning, Yunpeng Zhang
2020 J jnl
LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation.
Nucleic Acids Res.
Peng Wang, Xin Li, Yue Gao, Qiuyan Guo, Shangwei Ning, Yunpeng Zhang, Shipeng Shang, Junwei Wang, Yanxia Wang, Hui Zhi, Ying Fang, Weitao Shen, Guangmei Zhang, Steven Xi Chen, Xia Li
2020 J jnl
MicroRNAs and nervous system diseases: network insights and computational challenges.
Briefings Bioinform.
Jianjian Wang, Yuze Cao, Xiaoyu Lu, Tianfeng Wang, Shuang Li, Xiaotong Kong, Chunrui Bo, Jie Li, Xiaolong Wang, Heping Ma, Lei Li, Huixue Zhang, Shangwei Ning, Lihua Wang
2019 J jnl
Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers.
Nucleic Acids Res.
Yue Gao, Peng Wang, Yanxia Wang, Xueyan Ma, Hui Zhi, Dianshuang Zhou, Xin Li, Ying Fang, Weitao Shen, Yingqi Xu, Shipeng Shang, Lihua Wang, Li Wang, Shangwei Ning, Xia Li
2019 J jnl
LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments.
Nucleic Acids Res.
Peng Wang, Xin Li, Yue Gao, Qiuyan Guo, Yanxia Wang, Ying Fang, Xueyan Ma, Hui Zhi, Dianshuang Zhou, Weitao Shen, Weisha Liu, Lihua Wang, Yunpeng Zhang, Shangwei Ning, Xia Li
2018 J jnl
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease.
Nucleic Acids Res.
Hui Zhi, Xin Li, Peng Wang, Yue Gao, Baoqing Gao, Dianshuang Zhou, Yan Zhang, Maoni Guo, Ming Yue, Weitao Shen, Shangwei Ning, Lianhong Jin, Xia Li
2018 J jnl
MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases.
Nucleic Acids Res.
Ming Yue, Dianshuang Zhou, Hui Zhi, Peng Wang, Yan Zhang, Yue Gao, Maoni Guo, Xin Li, Yanxia Wang, Yunpeng Zhang, Shangwei Ning, Xia Li
2017 J jnl
LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs.
Nucleic Acids Res.
Shangwei Ning, Ming Yue, Peng Wang, Yue Liu, Hui Zhi, Yan Zhang, Jizhou Zhang, Yue Gao, Maoni Guo, Dianshuang Zhou, Xin Li, Xia Li
2017 J jnl
NSDNA: a manually curated database of experimentally supported ncRNAs associated with nervous system diseases.
Nucleic Acids Res.
Jianjian Wang, Yuze Cao, Huixue Zhang, Tianfeng Wang, Qinghua Tian, Xiaoyu Lu, Xiaoyan Lu, Xiaotong Kong, Zhaojun Liu, Ning Wang, Shuai Zhang, Heping Ma, Shangwei Ning, Lihua Wang
2016 J jnl
Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers.
Nucleic Acids Res.
Shangwei Ning, Jizhou Zhang, Peng Wang, Hui Zhi, Jianjian Wang, Yue Liu, Yue Gao, Maoni Guo, Ming Yue, Lihua Wang, Xia Li
2015 J jnl
miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs.
Database J. Biol. Databases Curation
Peng Wang, Hui Zhi, Yunpeng Zhang, Yue Liu, Jizhou Zhang, Yue Gao, Maoni Guo, Shangwei Ning, Xia Li
2014 J jnl
LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs.
BMC Bioinform.
Shangwei Ning, Zuxianglan Zhao, Jingrun Ye, Peng Wang, Hui Zhi, Ronghong Li, Tingting Wang, Xia Li