Shane C. Burgess

19 papers Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2019 J jnl
Chickspress: a resource for chicken gene expression.
Database J. Biol. Databases Curation
Fiona M. McCarthy, Ken Pendarvis, Amanda M. Cooksey, Cathy R. Gresham, Matt Bomhoff, Sean Davey, Eric Lyons, Tad S. Sonstegard, Susan M. Bridges, Shane C. Burgess
2012 J jnl
Nuclear Factor kappa B is central to Marek's Disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo.
BMC Syst. Biol.
Shyamesh Kumar, Dusan Kunec, Joram J. Buza, Hsin-I Chiang, Huaijun Zhou, Sugalesini Subramaniam, Ken Pendarvis, Hans H. Cheng, Shane C. Burgess
2012 J jnl
Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213.
BMC Bioinform.
Joseph S. Reddy, Ranjit Kumar, James M. Watt, Mark L. Lawrence, Shane C. Burgess, Bindu Nanduri
2011 J jnl
AgBase: supporting functional modeling in agricultural organisms.
Nucleic Acids Res.
Fiona M. McCarthy, Cathy R. Gresham, Teresia J. Buza, Philippe Chouvarine, Lakshmi R. Pillai, Ranjit Kumar, Seval Ozkan, Hui Wang, Prashanti Manda, Tony Arick, Susan M. Bridges, Shane C. Burgess
2011 J jnl
Prediction of Cell Penetrating Peptides by Support Vector Machines.
PLoS Comput. Biol.
William S. Sanders, C. Ian Johnston, Susan M. Bridges, Shane C. Burgess, Kenneth O. Willeford
2011 J jnl
TAAPP: Tiling Array Analysis Pipeline for Prokaryotes.
Genom. Proteom. Bioinform.
Ranjit Kumar, Shane C. Burgess, Mark L. Lawrence, Bindu Nanduri
2011 J jnl
The Proteogenomic Mapping Tool.
BMC Bioinform.
William S. Sanders, Nan Wang, Susan M. Bridges, Brandon M. Malone, Yoginder S. Dandass, Fiona M. McCarthy, Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess
2010 J jnl
GOModeler- A tool for hypothesis-testing of functional genomics datasets.
BMC Bioinform.
Prashanti Manda, McKinley G. Freeman, Susan M. Bridges, T. J. Jankun-Kelly, Bindu Nanduri, Fiona M. McCarthy, Shane C. Burgess
2010 — ch.
Gene Model Detection Using Mass Spectrometry.
Proteome Bioinformatics
Bindu Nanduri, Nan Wang, Mark L. Lawrence, Susan M. Bridges, Shane C. Burgess
2009 J jnl
An automated proteomic data analysis workflow for mass spectrometry.
BMC Bioinform.
Ken Pendarvis, Ranjit Kumar, Shane C. Burgess, Bindu Nanduri
2009 J jnl
Facilitating functional annotation of chicken microarray data.
BMC Bioinform.
Teresia J. Buza, Ranjit Kumar, Cathy R. Gresham, Shane C. Burgess, Fiona M. McCarthy
2009 — conf
Proteogenomic Mapping for Structural Annotation of Prokaryote Genomes.
IJCBS
Nan Wang, Shane C. Burgess, Mark L. Lawrence, Susan Bridges
2009 J jnl
Structural and functional-annotation of an equine whole genome oligoarray.
BMC Bioinform.
Lauren A. Bright, Shane C. Burgess, Bhanu Chowdhary, Cyprianna E. Swiderski, Fiona M. McCarthy
2008 J jnl
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research.
BMC Bioinform.
Yoginder S. Dandass, Shane C. Burgess, Mark L. Lawrence, Susan M. Bridges
2008 J jnl
Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility.
BMC Syst. Biol.
Divyaswetha Peddinti, Bindu Nanduri, Abdullah Kaya, Jean M. Feugang, Shane C. Burgess, Erdogan Memili
2008 — conf
Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks.
BIOCOMP
Nan Wang, Changhe Yuan, Shane C. Burgess, Bindu Nanduri, Mark L. Lawrence, Susan Bridges
2007 J jnl
AgBase: a unified resource for functional analysis in agriculture.
Nucleic Acids Res.
Fiona M. McCarthy, Susan M. Bridges, Nan Wang, G. Bryce Magee, W. Paul Williams, Dawn S. Luthe, Shane C. Burgess
2007 J jnl
Prediction of peptides observable by mass spectrometry applied at the experimental set level.
BMC Bioinform.
William S. Sanders, Susan M. Bridges, Fiona M. McCarthy, Bindu Nanduri, Shane C. Burgess
2007 J jnl
ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.
BMC Bioinform.
Susan M. Bridges, G. Bryce Magee, Nan Wang, W. Paul Williams, Shane C. Burgess, Bindu Nanduri