Shandar Ahmad

31 papers B 3Journal 22Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Global and local genomic features together modulate the spontaneous single nucleotide mutation rate.
Comput. Biol. Chem.
Akash Ajay, Tina Begum, Ajay Arya, Krishan Kumar, Shandar Ahmad
2023 J jnl
On Performance and Calibration of Natural Gradient Langevin Dynamics.
IEEE Access
Hanif Amal Robbani, Alhadi Bustamam, Risman Adnan, Shandar Ahmad
2019 J jnl
A Comparison of Shallow and Deep Learning Methods for Predicting Cognitive Performance of Stroke Patients From MRI Lesion Images.
Frontiers Neuroinformatics
Sucheta Chauhan, Lovekesh Vig, Michele De Filippo De Grazia, Maurizio Corbetta, Shandar Ahmad, Marco Zorzi
2019 — ch.
Computational Prediction of Nucleic Acid Binding Residues From Sequence.
Encyclopedia of Bioinformatics and Computational Biology (3)
Nur S. A. Ghani, Mohd Firdaus Raih, Shandar Ahmad
2019 J jnl
ECG anomaly class identification using LSTM and error profile modeling.
Comput. Biol. Medicine
Sucheta Chauhan, Lovekesh Vig, Shandar Ahmad
2019 — ch.
Protein-DNA Interactions.
Encyclopedia of Bioinformatics and Computational Biology (2)
Preeti Pandey, Sabeeha Hasnain, Shandar Ahmad
2016 J jnl
Improved pose and affinity predictions using different protocols tailored on the basis of data availability.
J. Comput. Aided Mol. Des.
Philip Prathipati, Chioko Nagao, Shandar Ahmad, Kenji Mizuguchi
2012 — ed.
Pattern Recognition in Bioinformatics - 7th IAPR International Conference, PRIB 2012, Tokyo, Japan, November 8-10, 2012. Proceedings
PRIB
Tetsuo Shibuya, Hisashi Kashima, Jun Sese, Shandar Ahmad
2011 J jnl
Prediction of dinucleotide-specific RNA-binding sites in proteins.
BMC Bioinform.
Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad
2010 J jnl
CCRXP: exploring clusters of conserved residues in protein structures.
Nucleic Acids Res.
Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov
2010 J jnl
Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.
BMC Bioinform.
Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paudel, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi
2010 J jnl
PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools.
Adv. Bioinformatics
Adeel Malik, Ahmad Firoz, Vivekanand Jha, Shandar Ahmad
2010 J jnl
Pattern Recognition in Bioinformatics.
Pattern Recognit. Lett.
Shandar Ahmad, Madhu Chetty, Bertil Schmidt
2010 J jnl
Proteochemometric Recognition of Stable Kinase Inhibition Complexes Using Topological Autocorrelation and Support Vector Machines.
J. Chem. Inf. Model.
Michael Fernández, Shandar Ahmad, Akinori Sarai
2009 B conf
Recognition of Drug-Target Interaction Patterns using Genetic Algorithm-optimized Bayesian-regularized Neural Networks and Support Vector Machines.
SMC
Michael Fernández, Akinori Sarai, Shandar Ahmad
2008 B conf
ATP-binding site as a further application of neural networks to residue level prediction.
IJCNN
Shandar Ahmad, Zulfiqar Ahmad
2008 — conf
Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products.
ISBRA
Shandar Ahmad
2008 B conf
Neural network based prediction of protein structure and Function: Comparison with other machine learning methods.
IJCNN
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
2008 — ed.
Pattern Recognition in Bioinformatics, Third IAPR International Conference, PRIB 2008, Melbourne, Australia, October 15-17, 2008. Proceedings
PRIB
Madhu Chetty, Alioune Ngom, Shandar Ahmad
2007 — conf
Dynamic Outlier Exclusion Training Algorithm for Sequence Based Predictions in Proteins Using Neural Network.
PRIB
Shandar Ahmad
2006 J jnl
Dimensionality of amino acid space and solvent accessibility prediction with neural networks.
Comput. Biol. Chem.
Marcos J. Araúzo-Bravo, Shandar Ahmad, Akinori Sarai
2006 J jnl
ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition.
Nucleic Acids Res.
Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai
2005 J jnl
Application of residue distribution along the sequence for discriminating outer membrane proteins.
Comput. Biol. Chem.
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
2005 J jnl
PSSM-based prediction of DNA binding sites in proteins.
BMC Bioinform.
Shandar Ahmad, Akinori Sarai
2005 J jnl
TMBETA-NET: discrimination and prediction of membrane spanning ß-strands in outer membrane proteins.
Nucleic Acids Res.
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
2004 J jnl
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.
Bioinform.
Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
2004 J jnl
Neural network-based prediction of transmembrane -strand segments in outer membrane proteins.
J. Comput. Chem.
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
2004 J jnl
Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins.
Nucleic Acids Res.
Shandar Ahmad, Akinori Sarai
2003 J jnl
Design and training of a neural network for predicting the solvent accessibility of proteins.
J. Comput. Chem.
Shandar Ahmad, M. Michael Gromiha
2003 J jnl
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.
Bioinform.
Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
2002 J jnl
NETASA: neural network based prediction of solvent accessibility.
Bioinform.
Shandar Ahmad, M. Michael Gromiha