Shan E Ahmed Raza

55 papers Journal 37Unranked 18

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	CellOMaps: A Compact Representation for Robust Classification of Lung Adenocarcinoma Growth Patterns. CoRR Arwa Al-Rubaian, Gozde Nur Gunesli, Wajd A. Althakfi, Ayesha Azam, David R. J. Snead, Nasir M. Rajpoot, Shan E Ahmed Raza
2025	J	`jnl`	CellOMaps: A compact representation for robust classification of lung adenocarcinoma growth patterns. Comput. Biol. Medicine Arwa Al-Rubaian, Gozde Nur Gunesli, Wajd A. Althakfi, Ayesha Azam, David R. J. Snead, Nasir M. Rajpoot, Shan E Ahmed Raza
2025	J	`jnl`	Deep Learning Based Segmentation of Blood Vessels from H&E Stained Oesophageal Adenocarcinoma Whole-Slide Images. CoRR Jiaqi Lv, Stefan S. Antonowicz, Shan E Ahmed Raza
2025	—	`conf`	DepthClassNet: A Multitask Framework for Monocular Depth Estimation and Texture Classification in Endoscopic Imaging. MIUA (2) Bashayer Abdallah, Shan E Ahmed Raza
2025	J	`jnl`	Domain Generalization in Computational Pathology: Survey and Guidelines. ACM Comput. Surv. Mostafa Jahanifar, Manahil Raza, Kesi Xu, Trinh Thi Le Vuong, Robert Jewsbury, Adam Shephard, Neda Zamanitajeddin, Jin Tae Kwak, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
2025	J	`jnl`	From Traditional to Deep Learning Approaches in Whole Slide Image Registration: A Methodological Review. CoRR Behnaz Elhaminia, Abdullah Alsalemi, Esha Nasir, Mostafa Jahanifar, Ruqayya Awan, Lawrence Young, Nasir M. Rajpoot, Fayyaz Minhas, Shan E Ahmed Raza
2025	—	`conf`	Gland Segmentation Using SAM with Cancer Grade As A Prompt. ISBI Yijie Zhu, Shan E Ahmed Raza
2025	—	`conf`	Leveraging Pathology Foundation Models for Panoptic Segmentation of Melanoma in H&E Images. MIUA (1) Jiaqi Lv, Yijie Zhu, Carmen Guadalupe Colin Tenorio, Brinder Singh Chohan, Mark Eastwood, Shan E Ahmed Raza
2025	J	`jnl`	Leveraging Pathology Foundation Models for Panoptic Segmentation of Melanoma in H&E Images. CoRR Jiaqi Lv, Yijie Zhu, Carmen Guadalupe Colin Tenorio, Brinder Singh Chohan, Mark Eastwood, Shan E Ahmed Raza
2025	—	`conf`	MitoNet: Efficient Ki-67 Detection in H&E-Stained Images. MIUA (1) Celia Benitez Camacho, Esha Sadia Nasir, Shan E Ahmed Raza
2025	J	`jnl`	ModalSurv: A Multimodal Deep Survival Framework for Prostate and Bladder Cancer. CoRR Noorul Wahab, Ethar Alzaid, Jiaqi Lv, Adam Shephard, Shan E Ahmed Raza
2025	—	`conf`	SWIFT-Reg: Slide-Wide Intelligent Feature-Based Tissue Registration. MIUA (1) Esha Sadia Nasir, Shan E Ahmed Raza
2024	J	`jnl`	An AI based Digital Score of Tumour-Immune Microenvironment Predicts Benefit to Maintenance Immunotherapy in Advanced Oesophagogastric Adenocarcinoma. CoRR Quoc Dang Vu, Caroline Fong, Anderley Gordon, Tom Lund, Tatiany L. Silveira, Daniel Rodrigues, Katharina von Loga, Shan E Ahmed Raza, David Cunningham, Nasir M. Rajpoot
2024	—	`conf`	An Attention Based Pipeline for Identifying Pre-Cancer Lesions in Head and Neck Clinical Images. ISBI Abdullah Alsalemi, Anza Shakeel, Mollie Clark, Syed Ali Khurram, Shan E Ahmed Raza
2024	J	`jnl`	An Attention Based Pipeline for Identifying Pre-Cancer Lesions in Head and Neck Clinical Images. CoRR Abdullah Alsalemi, Anza Shakeel, Mollie Clark, Syed Ali Khurram, Shan E Ahmed Raza
2024	—	`conf`	An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. ISBI Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza
2024	—	`conf`	Cell Maps Representation for Lung Adenocarcinoma Growth Patterns Classification in Whole Slide Images. ISBI Arwa Al-Rubaian, Gozde Nur Gunesli, Wajd A. Althakfi, Ayesha Azam, Nasir M. Rajpoot, Shan E Ahmed Raza
2024	J	`jnl`	Consistency regularisation in varying contexts and feature perturbations for semi-supervised semantic segmentation of histology images. Medical Image Anal. Raja Muhammad Saad Bashir, Talha Qaiser, Shan E Ahmed Raza, Nasir M. Rajpoot
2024	J	`jnl`	Mitosis detection, fast and slow: Robust and efficient detection of mitotic figures. Medical Image Anal. Mostafa Jahanifar, Adam Shephard, Neda Zamanitajeddin, Simon Graham, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
2024	J	`jnl`	Nuclei-Location Based Point Set Registration of Multi-Stained Whole Slide Images. CoRR Adith Jeyasangar, Abdullah Alsalemi, Shan E Ahmed Raza
2024	—	`conf`	Nuclei-Location Based Point Set Registration of Multi-stained Whole Slide Images. MIUA (1) Adith Jeyasangar, Abdullah Alsalemi, Shan E Ahmed Raza
2024	J	`jnl`	TIAViz: A Browser-based Visualization Tool for Computational Pathology Models. CoRR Mark Eastwood, John Pocock, Mostafa Jahanifar, Adam Shephard, Skiros Habib, Ethar Alzaid, Abdullah Alsalemi, Jan Lukas Robertus, Nasir M. Rajpoot, Shan E Ahmed Raza, Fayyaz Minhas
2023	J	`jnl`	A Fully Automated and Explainable Algorithm for the Prediction of Malignant Transformation in Oral Epithelial Dysplasia. CoRR Adam J. Shephard, Raja Muhammad Saad Bashir, Hanya Mahmood, Mostafa Jahanifar, Fayyaz Minhas, Shan E Ahmed Raza, Kris D. McCombe, Stephanie G. Craig, Jacqueline A. James, Jill Brooks, Paul Nankivell, Hisham Mehanna, Syed Ali Khurram, Nasir M. Rajpoot
2023	J	`jnl`	An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. CoRR Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza
2023	J	`jnl`	Cell Maps Representation For Lung Adenocarcinoma Growth Patterns Classification In Whole Slide Images. CoRR Arwa Al-Rubaian, Gozde Nur Gunesli, Wajd A. Althakfi, Ayesha Azam, Nasir M. Rajpoot, Shan E Ahmed Raza
2023	J	`jnl`	Consistency Regularisation in Varying Contexts and Feature Perturbations for Semi-Supervised Semantic Segmentation of Histology Images. CoRR Raja Muhammad Saad Bashir, Talha Qaiser, Shan E Ahmed Raza, Nasir M. Rajpoot
2023	J	`jnl`	Deep feature based cross-slide registration. Comput. Medical Imaging Graph. Ruqayya Awan, Shan E Ahmed Raza, Johannes Lotz, Nick Weiss, Nasir M. Rajpoot
2023	J	`jnl`	Domain Generalization in Computational Pathology: Survey and Guidelines. CoRR Mostafa Jahanifar, Manahil Raza, Kesi Xu, Trinh Thi Le Vuong, Robert Jewsbury, Adam Shephard, Neda Zamanitajeddin, Jin Tae Kwak, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
2023	J	`jnl`	LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. CoRR Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathon Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Thomas Watson, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
2023	J	`jnl`	Nuclear Segmentation and Classification: On Color & Compression Generalization. CoRR Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan E Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir M. Rajpoot
2023	J	`jnl`	Transformer-based Model for Oral Epithelial Dysplasia Segmentation. CoRR Adam J. Shephard, Hanya Mahmood, Shan E Ahmed Raza, Anna Luíza Damaceno Araújo, Alan Roger Santos-Silva, Marcio Ajudarte Lopes, Pablo Agustin Vargas, Kris D. McCombe, Stephanie G. Craig, Jacqueline A. James, Jill Brooks, Paul Nankivell, Hisham Mehanna, Syed Ali Khurram, Nasir M. Rajpoot
2022	—	`conf`	A Novel Framework for Coarse-Grained Semantic Segmentation of Whole-Slide Images. MIUA Raja Muhammad Saad Bashir, Muhammad Shaban, Shan E Ahmed Raza, Syed Ali Khurram, Nasir M. Rajpoot
2022	J	`jnl`	Deep Learning based Prediction of MSI in Colorectal Cancer via Prediction of the Status of MMR Markers. CoRR Ruqayya Awan, Mohammed Nimir, Shan E Ahmed Raza, Johannes Lotz, David R. J. Snead, Andrew Robison, Nasir M. Rajpoot
2022	J	`jnl`	Handcrafted Histological Transformer (H2T): Unsupervised Representation of Whole Slide Images. CoRR Quoc Dang Vu, Kashif Rajpoot, Shan E Ahmed Raza, Nasir M. Rajpoot
2022	J	`jnl`	Stain-Robust Mitotic Figure Detection for MIDOG 2022 Challenge. CoRR Mostafa Jahanifar, Adam J. Shephard, Neda Zamanitajeddin, Shan E Ahmed Raza, Nasir M. Rajpoot
2022	J	`jnl`	TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge. CoRR Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza
2021	—	`conf`	A Novel Cell Map Representation for Weakly Supervised Prediction of ER & PR Status from H&E WSIs. COMPAY@MICCAI Hammam M. AlGhamdia, Navid Alemi Koohbanani, Nasir M. Rajpoot, Shan E Ahmed Raza
2021	J	`jnl`	A digital score of tumour-associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma. CoRR Muhammad Shaban, Shan E Ahmed Raza, Mariam Hassan, Arif Jamshed, Sajid Mushtaq, Asif Loya, Nikolaos Batis, Jill Brooks, Paul Nankivell, Neil Sharma, Max Robinson, Hisham Mehanna, Syed Ali Khurram, Nasir M. Rajpoot
2021	J	`jnl`	CoNIC: Colon Nuclei Identification and Counting Challenge 2022. CoRR Simon Graham, Mostafa Jahanifar, Quoc Dang Vu, Giorgos Hadjigeorghiou, Thomas Leech, David R. J. Snead, Shan E Ahmed Raza, Fayyaz A. Minhas, Nasir M. Rajpoot
2021	J	`jnl`	FedDropoutAvg: Generalizable federated learning for histopathology image classification. CoRR Gozde Nur Gunesli, Mohsin Bilal, Shan E Ahmed Raza, Nasir M. Rajpoot
2021	J	`jnl`	Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations. CoRR Noor ul Wahab, Islam M. Miligy, Katherine Dodd, Harvir Sahota, Michael Toss, Wenqi Lu, Mostafa Jahanifar, Mohsin Bilal, Simon Graham, Young Park, Giorgos Hadjigeorghiou, Abhir Bhalerao, Ayat Lashen, Asmaa Ibrahim, Ayaka Katayama, Henry O. Ebili, Matthew Parkin, Tom Sorell, Shan E Ahmed Raza, Emily Hero, Hesham Eldaly, Yee-Wah Tsang, Kishore Gopalakrishnan, David R. J. Snead, Emad Rakha, Nasir M. Rajpoot, Fayyaz A. Minhas
2020	—	`conf`	Cross-Domain Knowledge Transfer for Prediction of Chemosensitivity in Ovarian Cancer Patients. CVPR Workshops Asfand Yaar, Amina Asif, Shan E Ahmed Raza, Nasir M. Rajpoot, Fayyaz A. Minhas
2020	J	`jnl`	HydraMix-Net: A Deep Multi-task Semi-supervised Learning Approach for Cell Detection and Classification. CoRR Raja Muhammad Saad Bashir, Talha Qaiser, Shan E Ahmed Raza, Nasir M. Rajpoot
2019	—	`conf`	Deconvolving Convolutional Neural Network for Cell Detection. ISBI Shan E Ahmed Raza, Khalid AbdulJabbar, Mariam Jamal-Hanjani, Selvaraju Veeriah, John Le Quesne, Charles Swanton, Yinyin Yuan
2019	J	`jnl`	Hover-Net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images. Medical Image Anal. Simon Graham, Quoc Dang Vu, Shan E Ahmed Raza, Ayesha Azam, Yee-Wah Tsang, Jin Tae Kwak, Nasir M. Rajpoot
2019	J	`jnl`	Micro-Net: A unified model for segmentation of various objects in microscopy images. Medical Image Anal. Shan E Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David B. A. Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot
2018	—	`conf`	A bottom-up approach for tumour differentiation in whole slide images of lung adenocarcinoma. Digital Pathology Najah Alsubaie, Korsuk Sirinukunwattana, Shan E Ahmed Raza, David R. J. Snead, Nasir M. Rajpoot
2018	J	`jnl`	Deconvolving convolution neural network for cell detection. CoRR Shan E Ahmed Raza, Khalid AbdulJabbar, Mariam Jamal-Hanjani, Selvaraju Veeriah, John Le Quesne, Charles Swanton, Yinyin Yuan
2018	J	`jnl`	DeepSDCS: Dissecting cancer proliferation heterogeneity in Ki67 digital whole slide images. CoRR Priya Lakshmi Narayanan, Shan E Ahmed Raza, Andrew Dodson, Barry Gusterson, Mitchell Dowsett, Yinyin Yuan
2018	J	`jnl`	XY Network for Nuclear Segmentation in Multi-Tissue Histology Images. CoRR Simon Graham, Quoc Dang Vu, Shan E Ahmed Raza, Jin Tae Kwak, Nasir M. Rajpoot
2017	—	`conf`	MIMONet: Gland Segmentation Using Multi-Input-Multi-Output Convolutional Neural Network. MIUA Shan E Ahmed Raza, Linda Cheung, David B. A. Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot
2016	—	`conf`	Handcrafted features with convolutional neural networks for detection of tumor cells in histology images. ISBI Muhammad Nasim Kashif, Shan E Ahmed Raza, Korsuk Sirinukunwattana, Muhammad Arif, Nasir M. Rajpoot
2016	J	`jnl`	Locality Sensitive Deep Learning for Detection and Classification of Nuclei in Routine Colon Cancer Histology Images. IEEE Trans. Medical Imaging Korsuk Sirinukunwattana, Shan E Ahmed Raza, Yee-Wah Tsang, David R. J. Snead, Ian A. Cree, Nasir M. Rajpoot
2015	—	`conf`	A Novel Cell Orientation Congruence Descriptor for Superpixel Based Epithelium Segmentation in Endometrial Histology Images. Patch-MI@MICCAI Guannan Li, Shan E Ahmed Raza, Nasir M. Rajpoot
2015	—	`conf`	A Spatially Constrained Deep Learning Framework for Detection of Epithelial Tumor Nuclei in Cancer Histology Images. Patch-MI@MICCAI Korsuk Sirinukunwattana, Shan E Ahmed Raza, Yee-Wah Tsang, David R. J. Snead, Ian A. Cree, Nasir M. Rajpoot