Shaika Chowdhury

18 papers A* 1Journal 12Unranked 5

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Advancing efficacy prediction for electronic health records based emulated trials in repurposing heart failure therapies. npj Digit. Medicine Nansu Zong, Shaika Chowdhury, Shibo Zhou, Sivaraman Rajaganapathy, Yue Yu, Liewei Wang, Qiying Dai, Pengyang Li, Xiaoke Liu, Suzette J. Bielinski, Jun Chen, Yongbin Chen, James R. Cerhan
2025	J	`jnl`	Enhancing Lung Cancer Treatment Outcome Prediction through Semantic Feature Engineering Using Large Language Models. CoRR MunHwan Lee, Shaika Chowdhury, Xiaodi Li, Sivaraman Rajaganapathy, Eric W. Klee, Ping Yang, Terence T. Sio, Liewei Wang, James R. Cerhan, Nansu Zong
2025	J	`jnl`	LLM-Match: An Open-Sourced Patient Matching Model Based on Large Language Models and Retrieval-Augmented Generation. CoRR Xiaodi Li, Shaika Chowdhury, Chung-Il Wi, Maria Vassilaki, Xiaoke Liu, Terence T. Sio, Owen Garrick, Young J. Juhn, James R. Cerhan, Cui Tao, Nansu Zong
2024	J	`jnl`	Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. J. Am. Medical Informatics Assoc. Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J. Bielinski, Alanna M. Chamberlain, James R. Cerhan, Nansu Zong
2023	—	`conf`	Evaluating Drug Effectiveness for Antihypertensives in Heart Failure Prognosis: Leveraging Composite Clinical Endpoints and Biomarkers from Electronic Health Records. BCB Shaika Chowdhury, Yongbin Chen, Xiao Ma, Qiying Dai, Yue Yu, Nansu Zong
2023	J	`jnl`	Evaluation of GPT-3 for Anti-Cancer Drug Sensitivity Prediction. CoRR Shaika Chowdhury, Sivaraman Rajaganapathy, Lichao Sun, James R. Cerhan, Nansu Zong
2022	J	`jnl`	BETA: a comprehensive benchmark for computational drug-target prediction. Briefings Bioinform. Nansu Zong, Ning Li, Andrew Wen, Victoria Ngo, Yue Yu, Ming Huang, Shaika Chowdhury, Chao Jiang, Sunyang Fu, Richard Weinshilboum, Guoqian Jiang, Lawrence Hunter, Hongfang Liu
2021	—	`conf`	Ensemble Fine-tuned mBERT for Translation Quality Estimation. WMT@EMNLP Shaika Chowdhury, Naouel Baili, Brian Vannah
2021	J	`jnl`	Ensemble Fine-tuned mBERT for Translation Quality Estimation. CoRR Shaika Chowdhury, Naouel Baili, Brian Vannah
2021	—	`conf`	MedTextSeg: A Deep Dual Sequential Model for Section Segmentation in Medical Reports. IEEE BigData Shaika Chowdhury, Halid Ziya Yerebakan, Yoshihisa Shinagawa, Philip S. Yu
2020	—	`conf`	Improving Medical NLI Using Context-Aware Domain Knowledge. *SEM@COLING Shaika Chowdhury, Philip S. Yu, Yuan Luo
2020	J	`jnl`	Interpretable Multi-Step Reasoning with Knowledge Extraction on Complex Healthcare Question Answering. CoRR Ye Liu, Shaika Chowdhury, Chenwei Zhang, Cornelia Caragea, Philip S. Yu
2020	—	`conf`	Med2Meta: Learning Representations of Medical Concepts with Meta-embeddings. HEALTHINF Shaika Chowdhury, Chenwei Zhang, Philip S. Yu, Yuan Luo
2019	J	`jnl`	Hierarchical Semantic Correspondence Learning for Post-Discharge Patient Mortality Prediction. CoRR Shaika Chowdhury, Chenwei Zhang, Philip S. Yu, Yuan Luo
2019	J	`jnl`	Med2Meta: Learning Representations of Medical Concepts with Meta-Embeddings. CoRR Shaika Chowdhury, Chenwei Zhang, Philip S. Yu, Yuan Luo
2019	J	`jnl`	Mixed Pooling Multi-View Attention Autoencoder for Representation Learning in Healthcare. CoRR Shaika Chowdhury, Chenwei Zhang, Philip S. Yu, Yuan Luo
2018	A*	`conf`	Multi-Task Pharmacovigilance Mining from Social Media Posts. WWW Shaika Chowdhury, Chenwei Zhang, Philip S. Yu
2018	J	`jnl`	Multi-Task Pharmacovigilance Mining from Social Media Posts. CoRR Shaika Chowdhury, Chenwei Zhang, Philip S. Yu