Shaheer U. Saeed

60 papers A* 1Journal 41Unranked 18

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Interpretability and Individuality in Knee MRI: Patient-Specific Radiomic Fingerprint with Reconstructed Healthy Personas. CoRR Yaxi Chen, Simin Ni, Shuai Li, Shaheer U. Saeed, Aleksandra Ivanova, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
2026	J	`jnl`	Promptable segmentation with region exploration enables minimal-effort expert-level prostate cancer delineation. CoRR Junqing Yang, Natasha Thorley, Ahmed Nadeem Abbasi, Shonit Punwani, Zion Tse, Yipeng Hu, Shaheer U. Saeed
2026	J	`jnl`	Radiomics-Integrated Deep Learning with Hierarchical Loss for Osteosarcoma Histology Classification. CoRR Yaxi Chen, Zi Ye, Shaheer U. Saeed, Oliver Yu, Simin Ni, Jie Huang, Yipeng Hu
2026	J	`jnl`	Retrieving Patient-Specific Radiomic Feature Sets for Transparent Knee MRI Assessment. CoRR Yaxi Chen, Simin Ni, Jingjing Zhang, Shaheer U. Saeed, Yipei Wang, Aleksandra Ivanova, Rikin Hargunani, Chaozong Liu, Jie Huang, Yipeng Hu
2026	J	`jnl`	Understanding the Transfer Limits of Vision Foundation Models. CoRR Shiqi Huang, Yipei Wang, Natasha Thorley, Alexander Ng, Shaheer U. Saeed, Mark Emberton, Shonit Punwani, Veeru Kasivisvanathan, Dean C. Barratt, Daniel C. Alexander, Yipeng Hu
2025	J	`jnl`	Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation. IEEE Trans. Pattern Anal. Mach. Intell. Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2025	J	`jnl`	Cryo-RL: automating prostate cancer cryoablation planning with reinforcement learning. CoRR Trixia Simangan, Ahmed Nadeem Abbasi, Yipeng Hu, Shaheer U. Saeed
2025	—	`conf`	Patient-Specific Radiomic Feature Selection with Reconstructed Healthy Persona of Knee MR Images. MICCAI (14) Yaxi Chen, Simin Ni, Shaheer U. Saeed, Aleksandra Ivanova, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
2025	J	`jnl`	Patient-specific radiomic feature selection with reconstructed healthy persona of knee MR images. CoRR Yaxi Chen, Simin Ni, Aleksandra Ivanova, Shaheer U. Saeed, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
2025	—	`conf`	Policy to Assist Iteratively Local Segmentation: Optimising Modality and Location Selection for Prostate Cancer Localisation. MLMI@MICCAI Xiangcen Wu, Shaheer U. Saeed, Yipei Wang, Ester Bonmati Coll, Yipeng Hu
2025	J	`jnl`	Policy to Assist Iteratively Local Segmentation: Optimising Modality and Location Selection for Prostate Cancer Localisation. CoRR Xiangcen Wu, Shaheer U. Saeed, Yipei Wang, Ester Bonmati Coll, Yipeng Hu
2025	—	`conf`	Promptable Cancer Segmentation Using Minimal Expert-Curated Data. MIUA (3) Lynn Karam, Yipei Wang, Veeru Kasivisvanathan, Mirabela Rusu, Yipeng Hu, Shaheer U. Saeed
2025	J	`jnl`	Promptable cancer segmentation using minimal expert-curated data. CoRR Lynn Karam, Yipei Wang, Veeru Kasivisvanathan, Mirabela Rusu, Yipeng Hu, Shaheer U. Saeed
2025	—	`conf`	Radiomic Fingerprints for Knee MR Image Assessment. iMIMIC@MICCAI Yaxi Chen, Simin Ni, Shaheer U. Saeed, Aleksandra Ivanova, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
2025	J	`jnl`	Radiomic fingerprints for knee MR images assessment. CoRR Yaxi Chen, Simin Ni, Shaheer U. Saeed, Aleksandra Ivanova, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
2025	J	`jnl`	Reasoning in machine vision: learning to think fast and slow. CoRR Shaheer U. Saeed, Yipei Wang, Veeru Kasivisvanathan, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu, Daniel C. Alexander
2025	—	`conf`	SPARS: Self-Play Adversarial Reinforcement Learning for Segmentation of Liver Tumours. MIUA (3) Catalina Tan, Yipeng Hu, Shaheer U. Saeed
2025	J	`jnl`	SPARS: Self-Play Adversarial Reinforcement Learning for Segmentation of Liver Tumours. CoRR Catalina Tan, Yipeng Hu, Shaheer U. Saeed
2025	—	`conf`	T2-Only Prostate Cancer Prediction by Meta-Learning from BI-Parametric MR Imaging. ISBI Weixi Yi, Yipei Wang, Natasha Thorley, Alexander Ng, Shonit Punwani, Veeru Kasivisvanathan, Dean C. Barratt, Shaheer U. Saeed, Yipeng Hu
2025	J	`jnl`	TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External Tracker. CoRR Qi Li, Shaheer U. Saeed, Yuliang Huang, Mingyuan Luo, Zhongnuo Yan, Jiongquan Chen, Xin Yang, Dong Ni, Nektarios Winter, Phuc Nguyen, Lucas Steinberger, Caelan Haney, Yuan Zhao, Mingjie Jiang, Bowen Ren, SiYeoul Lee, Seonho Kim, Minkyung Seo, Minwoo Kim, Yimeng Dou, Zhiwei Zhang, Yin Li, Tomy Varghese, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2024	J	`jnl`	Active learning using adaptable task-based prioritisation. Medical Image Anal. Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
2024	—	`conf`	Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. MICCAI (2) Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2024	J	`jnl`	Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. CoRR Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2024	J	`jnl`	Competing for pixels: a self-play algorithm for weakly-supervised segmentation. CoRR Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2024	—	`conf`	Segmentation by Registration-Enabled SAM Prompt Engineering Using Five Reference Images. WBIR Yaxi Chen, Aleksandra Ivanova, Shaheer U. Saeed, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
2024	J	`jnl`	Segmentation by registration-enabled SAM prompt engineering using five reference images. CoRR Yaxi Chen, Aleksandra Ivanova, Shaheer U. Saeed, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
2024	J	`jnl`	Semi-weakly-supervised neural network training for medical image registration. CoRR Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2024	J	`jnl`	The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. Iani J. M. B. Gayo, Shaheer U. Saeed, Ester Bonmati, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2024	—	`conf`	Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images. ISBI Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2024	J	`jnl`	Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images. CoRR Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2023	J	`jnl`	A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models. CoRR Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
2023	—	`conf`	Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. MIDL Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew John Clarkson, Dean C. Barratt, Yipeng Hu
2023	J	`jnl`	Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. CoRR Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
2023	—	`conf`	Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. MLMI@MICCAI (1) Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2023	J	`jnl`	Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. CoRR Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2023	—	`conf`	Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. DGM4MICCAI Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
2023	J	`jnl`	Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. CoRR Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
2023	—	`conf`	Non-rigid Medical Image Registration using Physics-informed Neural Networks. IPMI Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2023	J	`jnl`	Non-rigid Medical Image Registration using Physics-informed Neural Networks. CoRR Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2023	J	`jnl`	Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. Medical Image Anal. Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2023	A*	`conf`	SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery. NeurIPS Nina Montaña Brown, Shaheer U. Saeed, Ahmed Abdulaal, Thomas Dowrick, Yakup Kilic, Sophie Wilkinson, Jack Gao, Meghavi Mashar, Chloe He, Alkisti Stavropoulou, Emma Thomson, Zachary M. C. Baum, Simone Foti, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
2022	J	`jnl`	Active learning using adaptable task-based prioritisation. CoRR Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
2022	J	`jnl`	Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. Int. J. Comput. Assist. Radiol. Surg. João Ramalhinho, Bongjin Koo, Nina Montaña Brown, Shaheer U. Saeed, Ester Bonmati, Kurinchi Gurusamy, Stephen P. Pereira, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
2022	J	`jnl`	Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. CoRR Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu
2022	J	`jnl`	Image quality assessment for machine learning tasks using meta-reinforcement learning. CoRR Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
2022	J	`jnl`	Image quality assessment for machine learning tasks using meta-reinforcement learning. Medical Image Anal. Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
2022	J	`jnl`	Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. CoRR Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2022	—	`conf`	Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. CaPTion@MICCAI Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2022	J	`jnl`	Strategising template-guided needle placement for MR-targeted prostate biopsy. CoRR Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2021	—	`conf`	Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. ASMUS@MICCAI Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
2021	J	`jnl`	Adaptable image quality assessment using meta-reinforcement learning of task amenability. CoRR Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
2021	—	`conf`	Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels. ASMUS@MICCAI Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu
2021	J	`jnl`	Development and evaluation of intraoperative ultrasound segmentation with negative image frames and multiple observer labels. CoRR Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu
2021	—	`conf`	Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. IPMI Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
2021	J	`jnl`	Learning image quality assessment by reinforcing task amenable data selection. CoRR Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
2020	J	`jnl`	DeepReg: a deep learning toolkit for medical image registration. CoRR Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2020	J	`jnl`	DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2020	J	`jnl`	Introduction to Medical Image Registration with DeepReg, Between Old and New. CoRR Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu
2020	—	`conf`	Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes. MICCAI (4) Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu
2020	J	`jnl`	Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes. CoRR Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu