Sergio Santander-Jiménez

67 papers A 3B 3C 5Misc 2Journal 40Unranked 12

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Comment-based summarization using a multi-objective cuckoo search optimization approach. Appl. Soft Comput. Jesús M. Sánchez-Gómez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2026	J	`jnl`	High-level multi-platform approaches for scoring phylogenies on CPU and GPU devices. Future Gener. Comput. Syst. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2026	J	`jnl`	Multi-objective genetic algorithm with maximum-entropy classification and domain-specific evolutionary operators for microorganism selection on microbiomes. Appl. Soft Comput. Fernando M. Rodríguez-Bejarano, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2026	J	`jnl`	Multi-objective optimization approach with decomposition-based algorithm for selecting tagSNPs. Knowl. Based Syst. María Victoria Díaz-Galián, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2026	J	`jnl`	Multi-objective two-archive evolutionary algorithm to optimize the discovery of gene networks involved in cancer survival. Inf. Sci. Fernando M. Rodríguez-Bejarano, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2025	J	`jnl`	A multi-objective artificial bee colony approach for identifying cancer driver pathways. Expert Syst. Appl. Fernando M. Rodríguez-Bejarano, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2025	J	`jnl`	A multi-objective metaheuristic approach for generating cell type marker panels from single-cell transcriptomics. Swarm Evol. Comput. Fernando M. Rodríguez-Bejarano, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2025	—	`conf`	Advanced Decomposition-Based Bioinspired Algorithms for Multiobjective Phylogenetics. HAIS (2) Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2025	J	`jnl`	Multi-objective swarm-intelligence algorithm for document clustering. Expert Syst. Appl. Jesús M. Sánchez-Gómez, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2025	J	`jnl`	Multi-threaded SIMD strategies and frequency scaling for sustainable evolutionary biology. Clust. Comput. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2025	J	`jnl`	Reference Vector-guided Evolutionary Algorithm for cluster analysis of single-cell transcriptomes. Comput. Methods Programs Biomed. Fernando M. Rodríguez-Bejarano, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2024	J	`jnl`	GADPO: Genetic Algorithm based on Dominance for Primer Optimization. Expert Syst. Appl. Fernando M. Rodríguez-Bejarano, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2024	A	`conf`	IPU-EpiDet: Identifying Gene Interactions on Massively Parallel Graph-Based AI Accelerators. IPDPS Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
2024	J	`jnl`	Offline and online peer assessment in computer engineering: Insights from a 5-year experience. Educ. Inf. Technol. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, José M. Granado Criado, Álvaro Rubio-Largo, Juan Antonio Gómez Pulido, César Gómez-Martín, Arturo Durán-Domínguez
2023	J	`jnl`	A multi-objective butterfly optimization algorithm for protein encoding. Appl. Soft Comput. Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2023	B	`conf`	Interpreting High Order Epistasis Using Sparse Transformers. CHASE Miguel Graça, Diogo Marques, Sergio Santander-Jiménez, Leonel Sousa, Aleksandar Ilic
2022	J	`jnl`	Exploiting multi-level parallel metaheuristics and heterogeneous computing to boost phylogenetics. Future Gener. Comput. Syst. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
2022	J	`jnl`	Inter-Algorithm Multiobjective Cooperation for Phylogenetic Reconstruction on Amino Acid Data. IEEE Trans. Cybern. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
2022	J	`jnl`	Multiobjective evolutionary computation for high-order genetic interactions. Appl. Soft Comput. José M. Granado Criado, Álvaro Rubio-Largo, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2022	J	`jnl`	Parallel multi-objective optimization approaches for protein encoding. J. Supercomput. Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2022	B	`conf`	Tensor-Accelerated Fourth-Order Epistasis Detection on GPUs. ICPP Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
2022	A	`conf`	Unlocking Personalized Healthcare on Modern CPUs/GPUs: Three-way Gene Interaction Study. IPDPS Diogo Marques, Rafael Campos, Sergio Santander-Jiménez, Zakhar Matveev, Leonel Sousa, Aleksandar Ilic
2022	J	`jnl`	Unlocking Personalized Healthcare on Modern CPUs/GPUs: Three-way Gene Interaction Study. CoRR Diogo Marques, Rafael Campos, Sergio Santander-Jiménez, Zakhar Matveev, Leonel Sousa, Aleksandar Ilic
2021	B	`conf`	Fourth-Order Exhaustive Epistasis Detection for the xPU Era. ICPP Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
2021	Misc	`conf`	HEDAcc: FPGA-based Accelerator for High-order Epistasis Detection. FCCM Gaspar Ribeiro, Nuno Neves, Sergio Santander-Jiménez, Aleksandar Ilic
2021	J	`jnl`	Retargeting Tensor Accelerators for Epistasis Detection. IEEE Trans. Parallel Distributed Syst. Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
2020	J	`jnl`	A multi-objective optimization procedure for solving the high-order epistasis detection problem. Expert Syst. Appl. José M. Granado Criado, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo
2020	C	`conf`	Accelerating 3-Way Epistasis Detection with CPU+GPU Processing. JSSPP Ricardo Nobre, Sergio Santander-Jiménez, Leonel Sousa, Aleksandar Ilic
2020	A	`conf`	Exploring the Binary Precision Capabilities of Tensor Cores for Epistasis Detection. IPDPS Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
2020	J	`jnl`	GPU acceleration of Fitch's parsimony on protein data: from Kepler to Turing. J. Supercomput. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Antonio Zahinos-Márquez, Leonel Sousa
2020	—	`conf`	Heterogeneous CPU+iGPU Processing for Efficient Epistasis Detection. Euro-Par Rafael Campos, Diogo Marques, Sergio Santander-Jiménez, Leonel Sousa, Aleksandar Ilic
2020	J	`jnl`	Parallel evolutionary computation for multiobjective gene interaction analysis. J. Comput. Sci. Francisco Gonçalves, Sergio Santander-Jiménez, Leonel Sousa, José M. Granado Criado, Aleksandar Ilic
2019	J	`jnl`	A multiobjective adaptive approach for the inference of evolutionary relationships in protein-based scenarios. Inf. Sci. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
2019	Misc	`conf`	Analysis of MOEA/D Approaches for Inferring Ancestral Relationships. HAIS Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
2019	J	`jnl`	Comparative Analysis of Intra-Algorithm Parallel Multiobjective Evolutionary Algorithms: Taxonomy Implications on Bioinformatics Scenarios. IEEE Trans. Parallel Distributed Syst. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2019	J	`jnl`	Comparative assessment of GPGPU technologies to accelerate objective functions: A case study on parsimony. J. Parallel Distributed Comput. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Jorge Vicente-Viola, Leonel Sousa
2019	J	`jnl`	Multi-Objective Artificial Bee Colony for designing multiple genes encoding the same protein. Appl. Soft Comput. Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado Criado
2019	J	`jnl`	Multi-objective memetic meta-heuristic algorithm for encoding the same protein with multiple genes. Expert Syst. Appl. Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2019	J	`jnl`	Multi-objective protein encoding: Redefinition of the problem, new problem-aware operators, and approach based on Variable Neighborhood Search. Inf. Sci. Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2019	J	`jnl`	Parallel computing in bioinformatics: a view from high-performance, heterogeneous, and cloud computing. J. Supercomput. Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2018	—	`conf`	Analysis of Scheduling Policies in Metaheuristics for Evolutionary Biology. PBio@EuroMPI Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
2018	J	`jnl`	Multiobjective Frog-Leaping Optimization for the Study of Ancestral Relationships in Protein Data. IEEE Trans. Evol. Comput. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
2018	—	`conf`	Phylogenetic Reconstructions Using an Indicator-Based Bat Algorithm for Multicore Processors. BIBM Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
2018	—	`ed.`	Proceedings of the 6th International Workshop on Parallelism in Bioinformatics, PBio@EuroMPI 2018, Barcelona, Spain, September 23, 2018 PBio@EuroMPI Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado Criado, Rosa M. Badia
2017	J	`jnl`	Accelerating the phylogenetic parsimony function on heterogeneous systems. Concurr. Comput. Pract. Exp. Sergio Santander-Jiménez, Aleksandar Ilic, Leonel Sousa, Miguel A. Vega-Rodríguez
2017	J	`jnl`	Asynchronous Non-Generational Model to Parallelize Metaheuristics: A Bioinformatics Case Study. IEEE Trans. Parallel Distributed Syst. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2017	C	`conf`	Parallel Multi-objective Optimization for High-Order Epistasis Detection. ICA3PP Daniel Gallego-Sánchez, José M. Granado Criado, Sergio Santander-Jiménez, Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez
2017	J	`jnl`	Parallelism-based approaches in computational biology: a view from diverse case studies. Clust. Comput. Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2017	J	`jnl`	Using mixed mode programming to parallelize an indicator-based evolutionary algorithm for inferring multiobjective phylogenetic histories. Soft Comput. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2016	—	`ed.`	Algorithms for Computational Biology - Third International Conference, AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings AlCoB María Botón-Fernández, Carlos Martín-Vide, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2016	—	`conf`	Improving Multiobjective Phylogenetic Searches by Using a Parallel \varepsilon -Dominance Based Adaptation of the Firefly Algorithm. Euro-Par Workshops Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2016	J	`jnl`	Performance evaluation of dominance-based and indicator-based multiobjective approaches for phylogenetic inference. Inf. Sci. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2015	J	`jnl`	A hybrid approach to parallelize a fast non-dominated sorting genetic algorithm for phylogenetic inference. Concurr. Comput. Pract. Exp. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2015	J	`jnl`	On the design of shared memory approaches to parallelize a multiobjective bee-inspired proposal for phylogenetic reconstruction. Inf. Sci. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2015	J	`jnl`	Parallel Multiobjective Metaheuristicsfor Inferring Phylogenies on Multicore Clusters. IEEE Trans. Parallel Distributed Syst. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2015	J	`jnl`	Parallelism-based technologies in bioinformatics and biomedicine: a view from diverse perspectives. Concurr. Comput. Pract. Exp. Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
2014	C	`conf`	Applying OpenMP-based parallel implementations of NSGA-II and SPEA2 to study phylogenetic relationships. CLUSTER Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2014	—	`conf`	Inferring Multiobjective Phylogenetic Hypotheses by Using a Parallel Indicator-Based Evolutionary Algorithm. TPNC Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2014	—	`conf`	Performance analysis of Multiobjective Artificial Bee Colony implementations for phylogenetic reconstruction. NaBIC Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2013	—	`conf`	A Multiobjective Proposal Based on the Firefly Algorithm for Inferring Phylogenies. EvoBIO Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2013	—	`conf`	A Parallel Multiobjective Algorithm Inspired by Fireflies for Inferring Evolutionary Trees on Multicore Machines. EUROCAST (1) Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2013	—	`conf`	A comparative study on distance methods applied to a multiobjective firefly algorithm for phylogenetic inference. GECCO (Companion) Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2013	J	`jnl`	Applying a multiobjective metaheuristic inspired by honey bees to phylogenetic inference. Biosyst. Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2013	C	`conf`	Parallelizing a multiobjective swarm intelligence approach to phylogenetics using hybrid MPI/OpenMP schemes. EuroMPI Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
2012	—	`conf`	Comparing Different Operators and Models to Improve a Multiobjective Artificial Bee Colony Algorithm for Inferring Phylogenies. TPNC Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan Antonio Gómez Pulido, Juan Manuel Sánchez-Pérez
2012	C	`conf`	Evaluating the Performance of a Parallel Multiobjective Artificial Bee Colony Algorithm for Inferring Phylogenies on Multicore Architectures. ISPA Sergio Santander-Jiménez, Miguel Ángel Vega Rodríguez, Juan Antonio Gómez Pulido, Juan Manuel Sánchez-Pérez
2012	—	`conf`	Inferring Phylogenetic Trees Using a Multiobjective Artificial Bee Colony Algorithm. EvoBIO Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan Antonio Gómez Pulido, Juan Manuel Sánchez-Pérez