Sergey Koren

14 papers B 1Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
Weighted minimizer sampling improves long read mapping.
Bioinform.
Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy
2019 J jnl
HLA*LA - HLA typing from linearly projected graph alignments.
Bioinform.
Alexander T. Dilthey, Alexander J. Mentzer, Raphael Carapito, Clare Cutland, Nezih Cereb, Shabir A Madhi, Arang Rhie, Sergey Koren, Seiamak Bahram, Gil McVean, Adam M. Phillippy
2019 J jnl
Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
PLoS Comput. Biol.
Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
2019 J jnl
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
Briefings Bioinform.
Nathan D. Olson, Todd J. Treangen, Christopher Michael Hill, Victoria Cepeda-Espinoza, Jay Ghurye, Sergey Koren, Mihai Pop
2018 J jnl
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.
J. Comput. Biol.
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
2018 J jnl
A fast adaptive algorithm for computing whole-genome homology maps.
Bioinform.
Chirag Jain, Sergey Koren, Alexander T. Dilthey, Adam M. Phillippy, Srinivas Aluru
2017 B conf
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.
RECOMB
Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy
2014 J jnl
Automated ensemble assembly and validation of microbial genomes.
BMC Bioinform.
Sergey Koren, Todd J. Treangen, Christopher Michael Hill, Mihai Pop, Adam M. Phillippy
2013 — conf
De novo likelihood-based measures for comparing metagenomic assemblies.
BIBM
Christopher Michael Hill, Irina Astrovskaya, Howard Huang, Sergey Koren, Atif Memon, Todd J. Treangen, Mihai Pop
2012 — —
Genome Assembly: Novel Applications by Harnessing Emerging Sequencing Technologies and Graph Algorithms.
Sergey Koren
2011 J jnl
Bambus 2: scaffolding metagenomes.
Bioinform.
Sergey Koren, Todd J. Treangen, Mihai Pop
2010 J jnl
An algorithm for automated closure during assembly.
BMC Bioinform.
Sergey Koren, Jason R. Miller, Brian Walenz, Granger G. Sutton
2009 J jnl
A consistency-based consensus algorithm for
Bioinform.
Tobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, Knut Reinert
2008 J jnl
Aggressive assembly of pyrosequencing reads with mates.
Bioinform.
Jason R. Miller, Arthur L. Delcher, Sergey Koren, Eli Venter, Brian Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark M. Mobarry, Granger G. Sutton