Sergey Knyazev

15 papers C 1Journal 8Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Estimating Enzyme Expression and Metabolic Pathway Activity in
J. Comput. Biol.
Filipp Rondel, Hafsa Farooq, Roya Hosseini, Akshay Juyal, Sergey Knyazev, Serghei Mangul, Artem S. Rogovskyy, Alexander Zelikovsky
2021 — conf
A Novel Network Representation of SARS-CoV-2 Sequencing Data.
ISBRA
Sergey Knyazev, Daniel Novikov, Mark Grinshpon, Harman Singh, Ram Ayyala, Varuni Sarwal, Roya Hosseini, Pelin Icer Baykal, Pavel Skums, Ellsworth Campbell, Serghei Mangul, Alex Zelikovsky
2021 J jnl
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.
Briefings Bioinform.
Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky
2021 J jnl
From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering.
J. Comput. Biol.
Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson
2021 J jnl
MicrobeTrace: Retooling molecular epidemiology for rapid public health response.
PLoS Comput. Biol.
Ellsworth M. Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, Sergey Knyazev, Roxana Cintron, William M. Switzer
2021 J jnl
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.
J. Comput. Biol.
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky
2021 J jnl
Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations.
J. Comput. Biol.
Daniel Novikov, Sergey Knyazev, Mark Grinshpon, Pelin B. Icer, Pavel Skums, Alex Zelikovsky
2020 — conf
Benchmarking of computational error-correction methods for next-generation sequencing data.
BCB
Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina Gerasimov, Russell Littman, Brian L. Hill, Nicholas C. Wu, Harry (Taegyun) Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alex Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul
2020 — conf
Clustering Based Identification of SARS-CoV-2 Subtypes.
ICCABS
Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson
2020 — conf
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data.
ISBRA
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky
2018 J jnl
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Bioinform.
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov
2018 J jnl
Repeat-aware evaluation of scaffolding tools.
Bioinform.
Igor Mandric, Sergey Knyazev, Alex Zelikovsky
2017 — conf
Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities.
ISBRA
Igor Mandric, Sergey Knyazev, Cory Padilla, Frank Stewart, Ion I. Mandoiu, Alex Zelikovsky
2014 — conf
Coarse-grained model of protein interaction for bio-inspired nano-communication.
ICUMT
Sergey Knyazev, Sergey Tarakanov, Vladimir Kuznetsov, Yuri Porozov, Yevgeni Koucheryavy, Eugene O. Stepanov
2014 C conf
Protein Conformation Motion Modeling Using Sep-CMA-ES.
ICMLA
Maxim Buzdalov, Sergey Knyazev, Yuri Porozov