Sergei Maslov

27 papers Journal 24Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Coarse-grained model of serial dilution dynamics in synthetic human gut microbiome.
PLoS Comput. Biol.
Tarun Mahajan, Sergei Maslov
2025 J jnl
Evolutionary chemical learning in dimerization networks.
CoRR
Alexei V. Tkachenko, Bortolo Matteo Mognetti, Sergei Maslov
2024 J jnl
Semi-quantitative group testing for efficient and accurate qPCR screening of pathogens with a wide range of loads.
BMC Bioinform.
Ananthan Nambiar, Chao Pan, Vishal Rana, Mahdi Cheraghchi, João Ribeiro, Sergei Maslov, Olgica Milenkovic
2023 J jnl
FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi.
PLoS Comput. Biol.
Ananthan Nambiar, Veronika Dubinkina, Simon Liu, Sergei Maslov
2023 J jnl
Predicting metabolomic profiles from microbial composition through neural ordinary differential equations.
Nat. Mac. Intell.
Tong Wang, Xu-Wen Wang, Kathleen A. Lee-Sarwar, Augusto A. Litonjua, Scott T. Weiss, Yizhou Sun, Sergei Maslov, Yang-Yu Liu
2023 J jnl
Semi-Quantitative Group Testing for Efficient and Accurate qPCR Screening of Pathogens with a Wide Range of Loads.
CoRR
Anantham Nambiar, Chao Pan, Vishal Rana, Mahdi Cheraghchi, João Ribeiro, Sergei Maslov, Olgica Milenkovic
2023 J jnl
Transformer Neural Networks for Protein Family and Interaction Prediction Tasks.
J. Comput. Biol.
Ananthan Nambiar, Simon Liu, Maeve Heflin, John Malcolm Forsyth, Sergei Maslov, Mark Hopkins, Anna M. Ritz
2022 J jnl
A cross-study analysis of drug response prediction in cancer cell lines.
Briefings Bioinform.
Fangfang Xia, Jonathan E. Allen, Prasanna Balaprakash, Thomas S. Brettin, Cristina Garcia-Cardona, Austin Clyde, Judith D. Cohn, James H. Doroshow, Xiaotian Duan, Veronika Dubinkina, Yvonne A. Evrard, Ya Ju Fan, Jason Gans, Stewart He, Pinyi Lu, Sergei Maslov, Alexander Partin, Maulik Shukla, Eric A. Stahlberg, Justin M. Wozniak, Hyun Seung Yoo, George F. Zaki, Yitan Zhu, Rick Stevens
2022 J jnl
Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments.
PLoS Comput. Biol.
Yulia Fridman, Zihan Wang, Sergei Maslov, Akshit Goyal
2020 J jnl
Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence.
PLoS Comput. Biol.
Chen Liao, Tong Wang, Sergei Maslov, João B. Xavier
2020 — conf
Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks.
BCB
Ananthan Nambiar, Maeve Heflin, Simon Liu, Sergei Maslov, Mark Hopkins, Anna M. Ritz
2019 J jnl
Evidence for a multi-level trophic organization of the human gut microbiome.
PLoS Comput. Biol.
Tong Wang, Akshit Goyal, Veronika Dubinkina, Sergei Maslov
2019 J jnl
Multistability and regime shifts in microbial communities explained by competition for essential nutrients.
CoRR
Veronika Dubinkina, Yulia Fridman, Parth Pratim Pandey, Sergei Maslov
2018 J jnl
Predicting tumor cell line response to drug pairs with deep learning.
BMC Bioinform.
Fangfang Xia, Maulik Shukla, Thomas S. Brettin, Cristina Garcia-Cardona, Judith D. Cohn, Jonathan E. Allen, Sergei Maslov, Susan L. Holbeck, James H. Doroshow, Yvonne A. Evrard, Eric A. Stahlberg, Rick L. Stevens
2017 J jnl
Microbial community structure predicted by the stable marriage problem.
CoRR
Akshit Goyal, Veronika Dubinkina, Sergei Maslov
2016 J jnl
DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks.
PLoS Comput. Biol.
Daifeng Wang, Fei He, Sergei Maslov, Mark Gerstein
2015 J jnl
Diversity Waves in Collapse-Driven Population Dynamics.
PLoS Comput. Biol.
Sergei Maslov, Kim Sneppen
2013 — conf
Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between Arabidopsis and Poplar.
BCB
Daifeng Wang, Eric Pan, Gang Fang, Sunita Kumari, Fei He, Doreen Ware, Sergei Maslov, Mark Gerstein
2013 J jnl
Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks.
PLoS Comput. Biol.
Purushottam D. Dixit, Sergei Maslov
2013 J jnl
Universal distribution of component frequencies in biological and technological systems.
Proc. Natl. Acad. Sci. USA
Tin Yau Pang, Sergei Maslov
2011 J jnl
A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology.
PLoS Comput. Biol.
Tin Yau Pang, Sergei Maslov
2008 J jnl
Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks.
BMC Bioinform.
Iaroslav Ispolatov, Sergei Maslov
2008 — ch.
Topological and Dynamical Properties of Protein Interaction Networks.
Protein-protein Interactions and Networks
Sergei Maslov
2007 J jnl
Finding scientific gems with Google's PageRank algorithm.
J. Informetrics
P. Chen, H. Xie, Sergei Maslov, Sidney Redner
2007 J jnl
UV-Induced Mutagenesis in
PLoS Comput. Biol.
Sandeep Krishna, Sergei Maslov, Kim Sneppen
2006 J jnl
Automatic pathway building in biological association networks.
BMC Bioinform.
Anton Yuryev, Zufar Mulyukov, Ekaterina Kotelnikova, Sergei Maslov, Sergei Egorov, Alexander Nikitin, Nikolai Daraselia, Ilya Mazo
2006 J jnl
Ranking Scientific Publications Using a Simple Model of Network Traffic
CoRR
Dylan Walker, Huafeng Xie, Koon-Kiu Yan, Sergei Maslov