Serdar Bozdag

32 papers B 1C 2Journal 20Unranked 9
YearRankTypeTitle / Venue / Authors
2025 J jnl
CAAT-EHR: Cross-Attentional Autoregressive Transformer for Multimodal Electronic Health Record Embeddings.
CoRR
Mohammad Al Olaimat, Serdar Bozdag
2025 J jnl
DyGSSM: Multi-view Dynamic Graph Embeddings with State Space Model Gradient Update.
CoRR
Bizhan Alipour Pijani, Serdar Bozdag
2025 J jnl
IGCN: integrative graph convolution networks for patient level insights and biomarker discovery in multi-omics integration.
Bioinform.
Cagri Ozdemir, Yashu Vashishath, Serdar Bozdag, Alzheimer's Disease Neuroimaging Initiative
2025 — conf
Longitudinal Ensemble Integration for Sequential Classification with Multimodal Data.
ICDH
Aviad Susman, Rupak Krishnamurthy, Mohammad Al Olaimat, Serdar Bozdag, Bino A. Varghese, Nasim Sheikh-Bahaei, Gaurav Pandey
2025 J jnl
Machine-learning models for Alzheimer's disease diagnosis using neuroimaging data: survey, reproducibility, and generalizability evaluation.
Brain Informatics
Maryam Akhavan Aghdam, Serdar Bozdag, Fahad Saeed
2025 J jnl
Top-DTI: integrating topological deep learning and large language models for drug-target interaction prediction.
Bioinform.
Muhammed Talo, Serdar Bozdag
2024 J jnl
IGCN: Integrative Graph Convolutional Networks for Multi-modal Data.
CoRR
Cagri Ozdemir, Mohammad Al Olaimat, Yashu Vashishath, Serdar Bozdag, Alzheimer's Disease Neuroimaging Initiative
2024 J jnl
Longitudinal Ensemble Integration for sequential classification with multimodal data.
CoRR
Aviad Susman, Rupak Krishnamurthy, Yan Chak Li, Mohammad Al Olaimat, Serdar Bozdag, Bino A. Varghese, Nasim Sheikh-Bahaei, Gaurav Pandey
2024 — conf
Pvtad: Alzheimer's Disease Diagnosis Using Pyramid Vision Transformer Applied to White Matter of T1-Weighted Structural Mri Data.
ISBI
Maryam Akhavan Aghdam, Serdar Bozdag, Fahad Saeed
2024 J jnl
TA-RNN: an Attention-based Time-aware Recurrent Neural Network Architecture for Electronic Health Records.
CoRR
Mohammad Al Olaimat, Serdar Bozdag, Alzheimer's Disease Neuroimaging Initiative
2024 J jnl
TA-RNN: an attention-based time-aware recurrent neural network architecture for electronic health records.
Bioinform.
Mohammad Al Olaimat, Serdar Bozdag
2023 J jnl
GRAF: Graph Attention-aware Fusion Networks.
CoRR
Ziynet Nesibe Kesimoglu, Serdar Bozdag
2023 J jnl
PPAD: a deep learning architecture to predict progression of Alzheimer's disease.
Bioinform.
Mohammad Al Olaimat, Jared Martinez, Fahad Saeed, Serdar Bozdag
2022 B conf
Classification of Autism Spectrum Disorder Using rs-fMRI data and Graph Convolutional Networks.
IEEE Big Data
Tianren Yang, Mai A. Al-Duailij, Serdar Bozdag, Fahad Saeed
2022 J jnl
PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex Heterogeneous Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Cagatay Dursun, Anne E. Kwitek, Serdar Bozdag
2021 — conf
GWAS analysis to compute genetic markers of progression to Alzheimer's disease.
BCB
Yashu Vashishath, Serdar Bozdag
2021 — conf
SUPREME: a cancer subtype prediction methodology integrating multiple biological datatypes using graph convolutional neural networks.
BCB
Ziynet Nesibe Kesimoglu, Serdar Bozdag
2020 — conf
CTDPathSim: Cell line-tumor deconvoluted pathway-based similarity in the context of precision medicine in cancer.
BCB
Banabithi Bose, Serdar Bozdag
2020 — conf
NECo: A node embedding algorithm for multiplex heterogeneous networks.
BIBM
Cagatay Dursun, Jennifer R. Smith, G. Thomas Hayman, Anne E. Kwitek, Serdar Bozdag
2019 J jnl
GSEPD: a Bioconductor package for RNA-seq gene set enrichment and projection display.
BMC Bioinform.
Karl Stamm, Aoy Tomita-Mitchell, Serdar Bozdag
2019 — conf
PhenoGeneRanker: A Tool for Gene Prioritization Using Complete Multiplex Heterogeneous Networks.
BCB
Cagatay Dursun, Naoki Shimoyama, Mary Shimoyama, Michael Schläppi, Serdar Bozdag
2019 — conf
miRDriver: A Tool to Infer Copy Number Derived miRNA-Gene Networks in Cancer.
BCB
Banabithi Bose, Serdar Bozdag
2018 J jnl
Cancerin: A computational pipeline to infer cancer-associated ceRNA interaction networks.
PLoS Comput. Biol.
Duc Do, Serdar Bozdag
2015 J jnl
A Canonical Correlation Analysis-Based Dynamic Bayesian Network Prior to Infer Gene Regulatory Networks from Multiple Types of Biological Data.
J. Comput. Biol.
Brittany A. Baur, Serdar Bozdag
2013 J jnl
A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map.
IEEE ACM Trans. Comput. Biol. Bioinform.
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
2013 — conf
Age-Specific Signatures of Glioblastoma at the Genomic, Genetic, and Epigenetic levels.
BCB
Serdar Bozdag, Aiguo Li, Gregory Riddick, Yuri Kotliarov, Mehmet Baysan, Fabio M. Iwamoto, Margaret C. Cam, Svetlana Kotliarova, Howard A. Fine
2013 J jnl
Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space.
PLoS Comput. Biol.
Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close
2010 J jnl
FastMEDUSA: a parallelized tool to infer gene regulatory networks.
Bioinform.
Serdar Bozdag, Aiguo Li, Stefan Wuchty, Howard A. Fine
2010 J jnl
GliomaPredict: a clinically useful tool for assigning glioma patients to specific molecular subtypes.
BMC Medical Informatics Decis. Mak.
Aiguo Li, Serdar Bozdag, Yuri Kotliarov, Howard A. Fine
2009 J jnl
A compartmentalized approach to the assembly of physical maps.
BMC Bioinform.
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
2008 C conf
Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming.
WABI
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
2007 C conf
A Compartmentalized Approach to the Assembly of Physical Maps.
BIBE
Serdar Bozdag, Timothy J. Close, Stefano Lonardi