Sepideh Babaei

14 papers C 1Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Effects of segmentation errors on downstream-analysis in highly-multiplexed tissue imaging.
PLoS Comput. Biol.
Matthias Bruhns, Jan T. Schleicher, Maximilian Wirth, Marcello Zago, Sepideh Babaei, Manfred Claassen
2023 J jnl
A review on deep learning applications in highly multiplexed tissue imaging data analysis.
Frontiers Bioinform.
Mohammed Zidane, Ahmad Makky, Matthias Bruhns, Alexander Rochwarger, Sepideh Babaei, Manfred Claassen, Christian M. Schürch
2023 J jnl
Corrigendum: A review on deep learning applications in highly multiplexed tissue imaging data analysis.
Frontiers Bioinform.
Mohammed Zidane, Ahmad Makky, Matthias Bruhns, Alexander Rochwarger, Sepideh Babaei, Manfred Claassen, Christian M. Schürch
2023 J jnl
S
Patterns
Sepideh Babaei, Jonathan Christ, Vivek Sehra, Ahmad Makky, Mohammed Zidane, Kilian Wistuba-Hamprecht, Christian M. Schürch, Manfred Claassen
2015 J jnl
Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.
PLoS Comput. Biol.
Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P. F. Lelieveldt, Jeroen de Ridder, Marcel J. T. Reinders
2015 J jnl
Highlights from the Third European International Society for Computational Biology (ISCB) Student Council Symposium 2014.
BMC Bioinform.
Margherita Francescatto, Susanne M. A. Hermans, Sepideh Babaei, Esmeralda Vicedo, Alexandre Borrel, Pieter Meysman
2015 J jnl
Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia.
BMC Bioinform.
Erdogan Taskesen, Sepideh Babaei, Marcel J. T. Reinders, Jeroen de Ridder
2015 — —
Multi-scale network analyses for cancer omics data.
Sepideh Babaei
2013 J jnl
Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion.
BMC Bioinform.
Sepideh Babaei, Marc Hulsman, Marcel J. T. Reinders, Jeroen de Ridder
2012 J jnl
Towards designing modular recurrent neural networks in learning protein secondary structures.
Expert Syst. Appl.
Sepideh Babaei, Amir Geranmayeh, Seyyed Ali Seyyedsalehi
2011 — conf
Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis.
PRIB
Sepideh Babaei, Erik van den Akker, Jeroen de Ridder, Marcel J. T. Reinders
2010 J jnl
Protein secondary structure prediction using modular reciprocal bidirectional recurrent neural networks.
Comput. Methods Programs Biomed.
Sepideh Babaei, Amir Geranmayeh, Seyyed Ali Seyyedsalehi
2009 J jnl
Heart sound reproduction based on neural network classification of cardiac valve disorders using wavelet transforms of PCG signals.
Comput. Biol. Medicine
Sepideh Babaei, Amir Geranmayeh
2008 C conf
Pruning neural networks for protein secondary structure prediction.
BIBE
Sepideh Babaei, Seyyed Ali Seyyedsalehi, Amir Geranmayeh